knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p026t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p026t"
## 
## $loom_file
## [1] "_data/velocyto/p026t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] FALSE

Before filtering

## An object of class Seurat 
## 100542 features across 5905 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3565 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 3 4 5 6 7 8 9
1 MZB1 KLRB1 MZB1 CDHR5 C1QB MUC2 S100P BANK1 COL1A2 CFP SLPI CLCA1 CCL5 SLC26A3 TMEM61 MYBL2 VWF FOXP3 CCL5 MS4A1 MUC2 IL7R DERL3 GZMH
2 DERL3 IL7R DERL3 UGT2B17 C1QA KRT18 TFF1 MS4A1 COL1A1 CPVL PDZK1IP1 ITLN1 NKG7 CEACAM7 ANXA13 KIFC1 ACKR1 CTLA4 GZMK BANK1 MUC5B LTB IGKJ5 GZMB
3 JCHAIN SPOCK2 TNFRSF17 CA2 APOC1 TFF1 LCN2 TNFRSF13C COL3A1 FLT3 CTSE REP15 GZMA GUCA2A HEPACAM2 NCAPG RAMP2 TNFRSF4 IL7R PAX5 AC020656.2 RPS27 MZB1 NKG7
4 TNFRSF17 CD2 JCHAIN MS4A2 C1QC AGR2 KRTCAP3 HLA-DRA LUM IDO1 TMEM45B L1TD1 CD8A CEACAM1 WFDC2 UBE2C CLDN5 TIGIT GZMA TNFRSF13C KRT18 RPL21 IGLV3-1 GZMA
5 FKBP11 CCR7 FKBP11 TPSAB1 CD14 KRT8 PLPP2 VPREB3 IGFBP7 LST1 ANXA3 RETNLB CCL4 AQP8 SPINK4 KIF15 CALCRL IL2RA TNFAIP3 VPREB3 ERN2 TPT1 PRDX4 CCL5
6 SSR4 FYB1 PRDX4 PIGR MMP9 TFF3 AKR7A3 HLA-DPB1 DCN CSTA S100P SPINK4 TRGC2 GUCA2B RAP1GAP CDK1 PCDH17 LINC01943 CD2 CD22 MTRNR2L12 RPL32 FKBP11 KLRD1
7 SEC11C TRAC SEC11C SLC18A2 GPNMB S100A14 SLPI CD74 SPARC CSF2RA MSLN ZG16 CST7 MS4A12 KIAA1324 HIST1H1B PLVAP TNFRSF18 CXCR4 CD83 ATP2C2 RPL19 TNFRSF17 CD8A
8 XBP1 CD3D SSR4 CPA3 S100A9 PHGR1 RAB25 HLA-DRB1 C11orf96 TYROBP TMEM92 SPINK1 GZMK SLC51B PROX1 DLGAP5 CDH5 ICOS ANXA1 FCER2 MKI67 RPL30 JCHAIN PRF1
9 HERPUD1 LTB XBP1 PCK1 CD68 S100P RAMP1 AFF3 TIMP3 FCER1A PRSS3 B3GNT6 GZMH CA4 RAB15 TYMS CLEC14A ZC3H12D ARL4C HLA-DRA SLC12A2 RPL34 SEC11C CCL4
10 RAB30 ARL4C FKBP2 SLC26A3 AIF1 MUC5B EPCAM CD83 SPARCL1 AIF1 NDUFA4L2 KLK1 KLRD1 TMIGD1 SYT13 ORC6 EMCN RTKN2 CD3D HLA-DRB1 AC103702.2 RPS29 SSR4 CST7
11 POU2AF1 CCR6 IGKJ5 SLC9A3 FCGR3A CLDN4 CTSE CD37 TPM2 CD300E HEPH ANO7 CRTAM CLCA4 ST6GALNAC1 KIF11 SOX18 LAYN CD3E BLK FAT1 SARAF IGKV4-1 CTSW
12 SLAMF7 RPS27 HERPUD1 HMGCS2 MRC1 KRT19 TK1 HLA-DPA1 IGFBP5 EREG MAL2 FCGBP GZMB CDHR2 ARFGEF3 AURKB SLCO2A1 SPOCK2 TRAT1 IGHD PIGR RPS12 XBP1 CRTAM
13 FKBP2 SARAF POU2AF1 SLC26A2 C5AR1 SLC12A2 IGFBP2 PAX5 COL6A3 CD1C SERPINB5 TFF3 GNLY SLC9A3 FOXA3 HIST1H2AM APLNR TNFRSF9 MYADM AFF3 TOP2A RPS27A FKBP2 GNLY
14 PRDM1 TNFAIP3 IGLV3-1 PHGR1 MS4A4A ELF3 CDX1 BLK C1R CD207 TFF1 RASD1 TRDC MEP1A HES6 ASF1B KDR F5 CD52 HLA-DPB1 DSP CCR7 IGKC LINC02446
15 FCRL5 CD3E PRDM1 PLCE1 SLC16A10 FCGBP AGR2 POU2F2 CALD1 PLEK CDH17 SERPINA1 HCST CDHR5 RAB3D ESCO2 FAM167B IKZF2 PTPRC CD19 ATP1B1 RPS3A SPCS3 LAG3
16 CD38 TRBC1 SSR3 SELENBP1 MS4A6A SOX4 S100A14 FCMR COL6A2 MPEG1 EDN1 URAD XCL2 PKIB KLK11 STMN1 MMRN2 TBC1D4 RPS27 CD37 ELF3 RPS26 FCRL5 PTPN22
17 CD79A CD3G SPCS3 C10orf99 IGSF6 DSP SLC12A2 CD79A C1S CD86 FXYD3 ENTPD8 PTPRC HHLA2 KLK1 KIF2C CYYR1 TRAC DUSP2 HLA-DPA1 INF2 RPS15A SSR3 GZMK
18 ANKRD28 RPS27A SDF2L1 SLC37A2 PLA2G7 SPTBN1 DSG2 CXCR4 MYL9 HCK CA9 MUC2 PRF1 SLC17A4 CA8 NUSAP1 LDB2 CARD16 CD8A HLA-DQA1 MYO6 ARL4C CD79A IFNG
19 PIM2 SRGN RAB30 KIT MNDA ERN2 MKI67 LINC01781 RARRES2 GPR157 DSG2 HEPACAM2 PTPN22 XDH REG4 GTSE1 PALMD LTB ZFP36L2 HLA-DRB5 CENPF RPL37 SDF2L1 CD3D
20 SDF2L1 BCL11B SLAMF7 FABP1 CSF1R GPX2 MT1E SMAP2 FBLN1 EMILIN2 S100A16 FAM3D CD52 DHRS9 GALNT5 CLSPN ADGRF5 CD2 HCST LINC02397 POF1B RPL11 IGHA2 HCST
21 AC104699.1 CD28 ANKRD28 SLC4A4 OLR1 REG4 KLF5 LY9 CCDC80 FCN1 S100A14 SPDEF TNFAIP3 C11orf86 ATOH1 MME JAM2 S100A4 BTG1 CD74 ANKRD36C TRBC2 SPCS2 FASLG
22 SSR3 CXCR4 SPAG4 HES1 NCF2 TCEA3 CDT1 RPL30 BGN SPI1 GPRC5A MUC4 HOPX TRIM31 SCNN1A CDCA2 THSD7A DUSP4 RGCC HLA-DQB1 SOX4 RPS18 HERPUD1 HOPX
23 SDC1 RORA SPCS2 CHP2 LILRB4 TSPAN8 BIRC5 RPLP2 SERPINF1 CD1E PERP KIAA1324 CD3D C10orf99 CREB3L1 TCL1A TM4SF18 CD3D CD3G MEF2C LGALS3BP CD3E CCR10 TRGC2
24 SEL1L FKBP5 PIM2 MUC4 FPR3 COL27A1 TSPAN8 RPS27 NNMT PLD4 KRTCAP3 BCAS1 TMSB4X UGT2B17 TNFRSF11B PBK TIE1 LAIR2 RNF125 CXCR5 HES1 TNFAIP3 SLAMF7 SLA
25 FBXW7 RPLP1 DUSP5 AL137077.2 VSIG4 FAT1 GMNN RPL32 SULF1 CLEC10A AKR7A3 ELF3 CD7 CA2 NEURL1 ASPM ERG CD7 CST7 CD79A OLFM4 BCL11B CD38 CCL4L2
26 TENT5C ICOS SEL1L CD24 SLCO2B1 DSG2 TYMS NR4A2 MMP2 CLIC2 RAB25 HSD11B2 GZMM SULT1A2 MDK TK1 TEK LINC02195 TRBC2 POU2F2 TMEM238 TRBC1 TXNDC15 LINC01871
27 UBE2J1 RPS29 CHST2 PLA2G2A SPI1 LGALS4 KCNK1 RASGEF1B COL14A1 MS4A6A TSPAN8 NXPE1 CTSW AKR1B10 RAB25 SUGCT KANK3 CCR6 FYN CD79B REG1A GPR183 RAB30 CD3G
28 IGLV3-1 CREM CD38 HPGDS CD163 SOX9 UBE2T RPL13A AEBP1 SH2B3 EPCAM CDC42EP5 TRAC CLDN23 DDAH1 BUB1B CXorf36 STAM CD48 FCMR RPLP2 PRDM1 GZMM
29 PRDX4 CNOT6L FCRL5 GOLM1 CTSB ST6GALNAC1 MT1G KLF2 COL5A2 HLA-DMB KCNK1 PIGR CD3E MUC12 TFF3 BIRC5 PCAT19 ADAM12 PARP8 IRF8 RPL9 IGHGP CD3E
30 DUSP5 RPS12 IGHG2 KRT8 TREM2 EPHB3 MCM7 HLA-DQB1 THY1 IL1B MUC13 WFDC2 DUSP2 CD177 DEFA6 WDR76 RASIP1 HLA-A GZMM LY86 KLRB1 FAM92B METRNL
31 SPINK2 RPL34 HSP90B1 SLC39A5 NRP1 POF1B MAD2L1 RPS18 CYR61 RNF144B TRIM29 LGALS4 XCL1 SDCBP2 SPDEF KIF23 ADGRL4 TRBC1 PDCD4 RUBCNL CD2 SEL1L APOBEC3G
32 IGLL5 RPL21 CD79A ID4 MS4A7 EPCAM TRAP1 LAPTM5 COL4A2 CD1D SDCBP2 KRT18 IFNG DHRS11 MAL2 RMI2 SHANK3 PBXIP1 RUNX3 SWAP70 RPL3 ANKRD28 FGFBP2
33 IGKJ5 ZC3H12D TP53INP1 CEACAM7 CLEC7A INF2 CERS6 RPS3A FSTL1 HLA-DQA2 GDF15 SNORC CXCR4 LINC01559 SHROOM3 ZWINT SOX17 IL2RB RPS15A NR4A2 CD3D LMAN1 CD2
34 IGHGP PTPRC ERLEC1 ELF3 C1orf54 LGALS3BP REG4 RPL21 COL4A1 LGALS2 KLF5 SNHG18 GPR65 HSD3B2 FXYD3 TPX2 FAM110D RASGRP1 SRGN EBF1 RPS16 CYBA CD52
35 IGHG3 GIMAP7 SELENOM HSD11B2 C3AR1 KLF5 PERP RALGPS2 PCOLCE CCL22 CDH1 PLA2G10 CD2 KRT20 TCEA3 FAM111B ARHGEF15 CXCR6 AC058791.1 MARCH1 RPL13 IGHG2 CLEC2B
36 GNG7 PTGER4 IGHGP PADI2 SLC7A7 PLPP2 DHCR24 RPS27A IGFBP6 MNDA TMPRSS4 ST6GALNAC1 PIK3R1 CGN TOM1L1 SHCBP1 MYCT1 STK17B TMSB4X LINC01781 SPOCK2 HSP90B1 TMSB4X
37 CREB3L2 RPS3A SPCS1 ADIRF CD86 ATP1B1 MAL2 RPL11 COL12A1 DNASE1L3 SLC6A8 HES1 RUNX3 FABP1 GMDS MCM10 NOVA2 TRBC2 TRAC CD52 RPL10 UBE2J1 PTPRC
38 HSP90B1 PASK IGHV3-30 LGALS4 SLC15A3 LYZ FERMT1 NFKBID COL5A1 LILRB2 TSPAN1 SLC44A4 SLA2 PDE9A PHLDA2 CKS1B NPR1 TNFRSF1B MCL1 LAPTM5 RPS6 LY96 AKAP5
39 FNDC3B TRBC2 CLPTM1L GATA2 MSR1 CDX1 LGALS4 RPS29 EMILIN1 KYNU POF1B B4GALNT2 CLEC2D TMPRSS2 MAP7 NUF2 COL15A1 CD3G YPEL5 HLA-DOB BTG1 SDC1 SLA2
40 ST6GAL1 PBXIP1 ST6GAL1 TCIM SIRPA MAP7 CDCA7 CD52 CFH HLA-DQA1 CA12 EHF CD3G PRAP1 GPX2 CENPU AFAP1L1 CD3E JUND RASGEF1B CXCR4 SPAG4 CXCL13
41 IGHG2 S100A4 CYBA CLDN4 LILRB2 TMEM238 TMEM97 EZR PDGFRA TNFAIP2 SHROOM3 TCIM TRBC1 PLAC8 SOX9 NCAPG2 LHX6 RORA PIK3R1 RPS27 RPL13A ERLEC1 TNFAIP3
42 CLPTM1L ANXA1 TENT5C RASD1 ITGAM CLDN3 PBK RPL34 AKAP12 TNFSF13B NEBL AL137077.2 ARL4C TSPAN1 FHL2 TTK CCM2L PTPRC TRBC1 EGR3 RPS14 POU2AF1 GPR171
43 SPAG4 RPL30 IGHG3 CLDN3 TFEC COL6A1 KCTD3 RPL8 FBN1 HLA-DQB1 MUC17 PHGR1 ANXA1 LINC02023 KCNK1 TUBB2B CD34 GK GPR65 ADAM28 RGCC TMEM59 PDE4D
44 SEC61B TRAT1 IGKC AC023157.3 PILRA SHROOM3 HBA2 RPS8 ANTXR1 CCL19 PLS1 HIST1H2BG RARRES3 VSIG2 TSPAN13 CCNA2 CAVIN2 IKZF4 SARAF BCL2A1 CD3G CLPTM1L DUSP2
45 TRIB1 TPT1 DNAAF1 KRT20 CCR1 ARFGEF3 PI3 EBF1 ASPN FAM49A TMEM54 AGR2 CD247 PRSS3 IL13RA1 HMMR PREX2 MAGEH1 RPS12 FCRLA RPS21 SELENOM CD7
46 ERLEC1 RPS15A IGHA2 SLC44A4 SLC1A3 CDC42EP5 GPX2 RPL23A LHFPL6 IGSF6 AGR3 CLDN3 SLA AOC1 PODXL CENPE PTPRB DUSP16 CLEC2D LY9 SRGN SEC61B RARRES3
47 SPCS2 CLEC2D FNDC3A HIST1H2BH FCGR1A MAGI1 PIWIL1 RPL27A PLAT HLA-DRB5 KRT19 REG4 BTG1 SLC37A2 PERP HIST1H3B TMEM255B DNPH1 TSC22D3 RALGPS2 RPS3 SPCS1 ITGA1
48 SPCS1 RPS16 LMAN1 CSKMT SLAMF8 SEMA3B KRT8 RPS13 DDR2 TTYH2 AGR2 FAM83E APOBEC3G LYPD8 FCGBP UBE2T ROBO4 IL32 SPOCK2 SMIM14 RPL38 PIM2 VCAM1
49 MIR29B2CHG RPL32 MANEA MIR194-2HG CMKLR1 PIGR CDC6 TCF4 CDH11 RGS18 TINAGL1 KRT8 SYTL3 C3orf85 SLC44A3 MKI67 HSPA12B ARHGDIB S100A4 CXCR4 CNOT6L IGKJ4 LCK
50 SPCS3 RPL19 TRIB1 SULT1A1 RASSF4 PCK1 KRT18 EEF1B2 LAMA4 NLRP3 IGFBP2 TCEA3 PIP4K2A CHP2 KLF5 TOP2A ZNF385D HS3ST3B1 PIP4K2A GRASP RPLP1 MANF CLEC2D
51 TXNDC11 RPL11 SEC61B TMEM54 TYROBP IFI27 MUC2 RPS14 PLAC9 GRASP TNNT1 SMIM22 SH3BGRL3 SFN S100A16 CDKN3 EGFL7 LAT RPS3 REL PTPRC IGHG3 TRAC
52 TP53INP1 JUND IGKV4-1 ID1 VMO1 CHDH SOX9 MEF2C MXRA5 CLEC7A DSC2 ID4 ZFP36L2 LAMA3 DACH1 UHRF1 SNCG BCL11B RPL23A BASP1 RPL28 CRELD2 CD247
53 IGHA1 FAM107B JSRP1 FAM3D MARCO MYO6 ALDH1A1 RPS20 DKK3 STX11 AZGP1 ATOH1 FYN COL17A1 CLDN3 KIF14 AQP1 TTN RPS27A HLA-DMB RPS20 JSRP1 KRT86
54 IGHA2 BTG1 SDC1 MUC12 CYBB LAMB3 ARHGAP32 RPS10 GUCY1A1 FGL2 DSP PRUNE2 RNF125 DEFB1 EPHA2 HMGN2 VEGFC CD247 AC044849.1 LYN FYB1 DUSP5 TNIP3
55 CRELD2 RPS26 UBE2J1 KRT19 RAB31 ADIRF GSTO2 RPS5 CLMP LAMP3 LCN2 CLDN4 RGCC BTNL8 NEDD4L MELK LINC01235 LCK RPS29 RPL21 RPL10A IGKJ3 CXCR6
56 LMAN1 RGCC IGHG1 TSPAN1 SLC8A1 HES1 S100A16 RPS23 FGF7 PTPRE MISP ERN2 LCP1 MISP PLPP2 KNL1 JCAD GBP2 BCL11B BCAS4 RPSA ALG5 RUNX3
57 MANEA RPL13 MANF GPA33 ADAP2 MEGF6 CDC42EP5 RPL19 COL8A1 CSF1R JUP WNK4 METRNL RHOD EPCAM MCM4 GNG11 ARID5B GPR171 RASGRP2 S100A4 NUCB2 HLA-A
58 MANF CD6 PDK1 MISP ITGAX TMC5 IMPA2 CD79B CRYAB BCL2A1 TFF3 TPSG1 CLEC2B GPA33 REP15 HELLS DOC2B TNFAIP3 MALAT1 RPL23A ARHGDIB TENT5C AKNA
59 SPATS2 TMSB4X TRAM1 VEGFA APOE PCLO ATP1B1 RPS6 SLIT3 C1orf162 METTL27 GMDS SRGN MIER3 MBOAT2 CENPM PGM5 SRGN ZFP36 BTG1 ANKRD12 PDIA6 CLIC3
60 SEL1L3 FYN TXNDC15 S100A6 MMP19 SIPA1L2 GPRC5A RPS11 ITIH5 TMEM170B FSCN1 RAP1GAP CD69 CDKN2B ALDH1A1 PTTG1 F2RL3 YWHAB TUBA4A CD72 RPS10 IGHV1-2 RAB27A
61 PDK1 SMAP2 CPEB4 KRT18 LAIR1 PLXNB2 CKB SELL MXRA8 HLA-DRA F2RL1 AOC1 NR4A2 SCNN1B S100P SMC2 AL583785.1 CD28 RPL30 SCIMP TRAC TP53INP1 IL2RB
62 ADA2 RPL37 TMEM59 SFN ADGRE2 MIB2 PAICS RPSA CYGB FPR1 CES2 HEXIM1 MYADM CASP5 AGR3 FANCI FGD5 ETS1 CNOT6L RPS20 JUND ITM2C TUBA4A
63 IGHG1 TNFRSF25 CRELD2 HEXIM1 PLXDC2 APP FXYD3 RPL9 ISLR FGR IFT172 IGFBP2 ALOX5AP PRR15 DLL1 ATAD5 SELP IL7R ETS1 FAU TOMM7 IGHA1 TRDC
64 FAM30A CD7 TPST2 SOX4 CTSL EPS8L3 FAM111B IFT57 LSAMP HLA-DRB1 KRT8 IFI27 FYB1 CEACAM6 CLDN4 RAD51AP1 PDE2A SMAP2 RORA CD69 STK17B RPN2 TRBC1
65 IGHG4 RPS19 TMEM258 IER3 EPB41L3 ATP2C2 HMGCS1 TSC22D3 RUNX1T1 SLC31A2 EGLN3 AC103702.2 PARP8 ALDOB DSP CEP55 CRIP2 SAMSN1 H3F3B RPS11 ZC3H12D IGHG1 DUSP4
66 SELENOM ANKRD12 IGHA1 SMIM22 CCL3 ATP8B1 KRT19 FAU FERMT2 CD93 LAMB3 CREB3L1 PDCD4 BTNL3 DSG2 POLQ FZD4 CD27 CALM1 RPL19 TSC22D3 DNAJC3 TRBC2
67 JSRP1 RPLP2 IGKV3-20 HIST1H2BG EMILIN2 MYO10 TOP2A ORAI2 NDN OLR1 ABHD17C KLF4 DUSP4 SMIM22 LGALS4 RAD54L ADCY4 IL1R1 CLEC2B TCF4 RPS7 TXNDC11 LCP1
68 EIF2AK4 RPL28 CD27 CGN LHFPL2 TPM1 CES2 SESN3 PCDH7 CYBB CD24 FOXA3 ID2 C1QTNF12 RASEF SNRNP25 MEOX1 FAS FYB1 RPL32 CREM CPEB4 TIGIT
69 SEC24A P2RY10 PDIA6 NRARP SERPINA1 PERP GGCT RPS16 BICC1 CD83 SERINC2 FRYL AKNA SLC44A4 TPM1 SGO2 NRN1 UBC RPLP1 NFKBID RPS4X TRAM1 ARL4C
70 DNAAF1 RPS18 NUCB2 ACADS SMIM25 MYH14 LYZ YPEL5 PCDH18 MS4A7 CLDN3 SCNN1A TUBA4A LRRC19 ITGA2 CENPF TLL1 CREM EIF1 RPL11 RPL23A DNAAF1 SH3BGRL3
71 SELENOS TOMM7 IGHG4 CDX2 FCER1G FXYD3 SQLE TOMM7 GPC6 ARHGAP22 MBOAT2 GALNT5 YPEL5 OASL S100A14 SKA1 MMRN1 CD4 RPLP2 RPL13A ANXA1 SRPRA RGCC
72 CPEB4 RPS14 SEL1L3 AOC1 ADAMDEC1 TRIM2 SAPCD2 SMCHD1 KANK2 HLA-DPA1 BACE2 AGR3 CREM DDR1 AC128688.2 E2F1 PCDH12 FYB1 RPS26 RPS23 RPL14 TRIB1 GPR65
73 FNDC3A GPR183 FBXW7 MYH14 PTAFR UQCRC1 DSP RPL10A ADH1B CCDC88A CDX1 GPX2 LDLRAD4 PADI2 WDR72 SERPINA9 SELE CYTIP CREM RPS18 CD48 KRTCAP2 CXCR4
74 TRAM1 ARHGDIB TMED10 Z93241.1 LRRC25 CTBP2 FASN SMIM14 PODN NCF2 TRIM2 PCLO RPS27 ACADS CAMK2N1 FANCD2 SOX7 PHLDA1 AC020916.1 SNX2 RPS28 PDK1 TRAT1
75 IGLC3 ITM2A SERP1 APOBR MMP12 HOXB7 MCM4 RPS28 C3 JAML CDC42EP5 MTRNR2L12 PDE4D FAM3D AGR2 DEPDC1B BCAM GMFG DNAJA1 KDM6B RPS19 IGKV3-20 ID2
76 ELL2 ITK MIR155HG IFI27 BCAT1 S100A6 SERPINB5 BTG1 NEGR1 BATF3 SMIM31 DSP AC044849.1 TMEM54 CD24 BUB1 GJA1 FYN PDE4D RPS8 RPL35A FNDC3A XCL2
77 PDIA4 PDE3B MIR29B2CHG DSP MPEG1 CES2 PPP1R1B MIR29B2CHG PDGFRB RNASE6 PTPRR IER3 HLA-A FXYD3 CDH1 BRIP1 NOS3 REL SMAD7 SLC2A3 CLEC2D RABAC1 COTL1
78 TXNDC15 RPS20 ITM2C AC103702.2 SIGLEC12 SPINT1 AFAP1-AS1 RPS12 NID1 THBD CLDN4 MLPH TRBC2 HSD17B2 SMIM31 CENPK SEMA3F RHOH HLA-A KLF2 RPS23 TMEM208 SH2D2A
79 C16orf54 RPL35A TMEM208 LGALS3 NPL CD9 TMEM45B LYN CTSK RIPK2 KLK1 CA12 JUND MYH14 KRT8 CCNB2 RAB3C BTG1 EMB LTB PFDN5 DERL1 ADGRE5
80 TPST2 RPL9 IGHV3-23 PRSS3 GNB4 TMEM54 ECT2 GRASP THBS2 BASP1 PLPP2 CRACR2B IL2RB SMPD1 OR51E1 ZNF367 FLT4 SKAP1 RARRES3 YPEL5 RORA TPST2 ALOX5AP
81 SERP1 GPR171 PDIA4 EGR1 IL1RN CYC1 MARC1 RPL27 EFEMP1 SLC8A1 HOXA13 NEO1 CNOT6L ENTPD8 GDF15 NDC80 INHBB SLA TOMM7 CD48 SYNE2 CD27 ITGAE
82 NUCB2 TSHZ2 H1FX ARL14 TLR8 GMDS ETV4 SNX2 PTN NAV1 NXPH4 CDHR5 HLA-E ASS1 MUC2 E2F8 ADAMTS9 FRMD4B LYAR RPLP2 KLF2 TMED10 GATA3
83 TMEM258 SLC2A3 CXorf21 HSPA2 SIGLEC1 ETS2 FDFT1 RPL35A VCAN RASSF2 KRT20 C10orf99 ARHGDIB TP53I3 GALNT7 NEIL3 CD93 TSPAN5 DDX5 RPL34 PDCD4 DNAJC1 SLC7A5
84 TMED10 ZFP36L2 HIST1H1C ETNK1 LIPA PRSS8 SOWAHC HLA-E NEXN LAP3 F3 CAMK2N1 SRSF2 ARL14 SLC9A3R2 MND1 TMTC1 TMEM173 LINC00513 TMEM154 RPS13 TMEM258 PSMB9
85 PDIA6 RNF19A RRBP1 H1F0 CLEC5A PPP1R1B CLDN3 RPS3 MGP RAB31 LGALS4 RNASE1 STK17B HPGD HBEGF NCAPD2 PTPRM SARAF RNF19A RPS27A UBA52 KDELR1 FYN
86 MIR155HG CD52 ITGA6 CAMK2N1 PLEK MUC17 MACROD1 TRIM38 RBMS3 THEMIS2 ATP1B1 TRPM4 AC058791.1 EDN3 NET1 MAD2L1 GPRC5B CDKN1B ADGRE5 SP110 RPL18 REEP5 TNFRSF1B
87 DNAJC1 RPL23A UBC CES2 CPVL ABCC3 CDH17 REL GGT5 GRN ZNF703 SOX4 REL PLS1 RAB3B DTX1 SHROOM4 MALT1 KLRB1 GPR18 CCR6 SEC62 HLA-C
88 CD27 RPS4X AL121944.1 RND3 LPL IGFBP2 SPTBN1 RPS7 PDLIM3 OSM ETHE1 AC023157.3 CCL4L2 SERINC2 LIPG DHFR RAPGEF4 CORO1B CCSER2 RPL18A RPS25 FBXW7 CNOT6L
89 IGLC2 RPL10 IGLC2 TMEM238 PLTP GALNT3 GINS2 MALAT1 FOXF1 HLA-DOA CALB1 PLCB4 HLA-C PRSS8 KRT18 CDCA8 LIMS2 TMSB4X CCL4 SMAP2 RPL5 IGHV3-23 SYTL3
90 UFM1 GPRIN3 BTG2 SLC20A1 RNF130 CD320 TFF3 RPS21 CXCL14 LILRA4 PHLDA2 FAM3B ZFP36 TMC4 APP FBXO5 ARHGAP29 PFN1 GMFG RPL37 CALM1 SRM EMB
91 TMEM59 LCK IGHM PRSS8 TLR2 CD24 CENPM RPL37 TGFB1I1 PTGS2 ADIRF NUPR1 DDX5 FBLIM1 SLC12A2 PLK4 FAM69B PHTF2 PTGER4 RPL10A SMCHD1 UBC AKAP13
92 RABAC1 ETS1 IGLC3 KLF4 FGL2 DSC2 TRIM2 RPL18 SERPING1 HLA-DPB1 TOX3 ARL14 COTL1 HK2 STXBP6 RGS13 SPARCL1 RAC2 MYL12A EZR RPL6 SERP1 IKZF3
93 DNAJC3 RPSA EIF4E IER5L AQP9 CDH17 ASRGL1 RPL14 MFAP4 PHACTR1 LINC00483 TPM1 SEPT7 FSIP2 ARC CHEK1 RASSF9 RAP1A RPL10 RPL30 RPS4Y1 H1FX PIK3R1
94 IGHV3-23 RPL10A FLNB CCL18 RRBP1 PRSS3 ATP2B1 FXYD1 UBE2E2 CEACAM6 AC005837.1 MCL1 MGLL GALNT3 ATAD2 WWTR1 GBP5 RPS10 HLA-DMA MALAT1 PDIA4 THEMIS
95 ISG20 LAT ATP8B1 LST1 MARCKSL1 CLDN4 ZFAS1 MYLK ADAP2 SRD5A3 HSPA2 FOSL2 HMCN2 TPSG1 RRM1 NUAK1 SH2D2A SYNE2 NCOA3 GIMAP7 BTG2 CREM
96 BTG2 AC058791.1 HIST1H2AG HCK LGALS3 F12 RPL18A GLT8D2 TET2 RND3 H1F0 CD48 SLC4A4 ETS2 TMPO FLT1 RPS26 CD69 RPS21 MYADM MDM2 CORO1A
97 IGKV4-1 RPL13A MAFB CCL3L1 ATP5F1D MGST2 RPLP1 TMEM47 SAMHD1 TMEM238L EGR1 DNAJA1 B3GNT3 TGFBI TIMELESS VWA1 GATA3 STK17B RPSA RPL27 JUN FYB1
98 CYBA RPS6 TST HMOX1 PTPRF DDAH1 JUNB CCL11 TYMP CERS6 PTPRF TSC22D3 SIRT6 CLRN3 PHGDH COL4A2 BIRC3 RPSA JUND AC058791.1 GADD45A OASL
99 EVI2B NR3C1 OLFM4 ABCA1 VPS13A FOXQ1 PFDN5 ELN HLA-DMA MPZL2 CDX2 ZBTB1 DUOX2 KDELR3 NUDT1 STC1 PTPN22 SRSF2 RPS6 RPL18A HSPA5 ANXA1
100 PABPC4 JUNB CDC42BPA KCTD12 PKP3 MUC13 RPS15A POSTN NFKBID ASS1 GGT6 CCND2 B4GALNT3 MS4A8 CENPH COL4A1 RNF213 EZR RPS5 FXYD5 IGLC2 ARPC2

separation of epithelial, stromal and immune cells

Cell split