knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p025t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p025t"
## 
## $loom_file
## [1] "_data/velocyto/p025t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 5533 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3199 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 3 4 5 6 7 8 9
1 NKG7 IL7R AL137077.2 CD40LG KRT20 FOXP3 NR4A3 CCL5 IL7R PYGB BANK1 GUCA2A ASCL2 AL137077.2 TFF3 TPSAB1 COL3A1 SPARCL1 MS4A1 NKG7 LYZ MZB1 FERMT1 MUC4 RNF43
2 GZMA CREM AC069224.1 CD2 TSPAN1 ZC3H12D CRTAM CD3G GIMAP4 GPX2 TNFRSF13C GUCA2B FERMT1 HIST1H4A AGR2 CPA3 COL1A2 ACKR1 VPREB3 GZMA TYROBP DERL3 EPCAM CLCA1 PLCB4
3 CD8A TNFAIP3 HIST1H2AG S100A4 WFDC2 CCR6 GZMK KLRD1 RPL34 PIGR MS4A1 CA4 TSPAN6 HIST1H2AG PIGR MS4A2 COL1A1 VWF BANK1 CCL5 AIF1 TNFRSF17 TSPAN8 MT1G SOX4
4 CCL5 JUND HEXIM1 LTB S100P RORA RGCC CD2 RPS3A PLCB4 CD83 AQP8 PERP Z93241.1 GPX2 GATA2 CALD1 CLDN5 CD79A GZMH CD14 JSRP1 GPX2 ITLN1 VEGFA
5 CCL4 SARAF SOX4 TRAC FXYD3 ICOS ZNF331 LINC01871 RPS27A KRT18 GRASP CLCA4 EPCAM HIST1H2BG CXCL3 HPGDS COL4A2 GNG11 TNFRSF13C CST7 CD68 IGLV3-1 CDH1 UGT2B17 PYGB
6 CXCL13 SRGN HIST1H2AH CD3D AC005833.1 S100A4 CXCR4 CD3D TXNIP EPHB3 CD79A CEACAM7 GPX2 AC017074.1 KRT18 KIT COL6A2 RAMP2 CD79B DUSP4 CYBB IGKJ5 CD24 MUC2 ZKSCAN1
7 GZMH RGCC HSPA2 CD3G TPSG1 IL7R YPEL5 TRAC RPL9 KRT8 HLA-DRA SLC26A3 SLC12A2 HIST1H2BH FXYD3 SLC18A2 COL6A3 AQP1 LINC01781 RGCC FGL2 IGHA2 SLC12A2 FCGBP
8 CCL3 CXCR4 IER5L IL7R ASS1 LTB TIPARP TRGC1 RPS12 ZKSCAN1 VPREB3 CDKN2B-AS1 KLF5 RASD1 LENG8 RHEX THY1 EGFL7 HLA-DRA GZMK MS4A6A JCHAIN PLCB4 REP15
9 CTSW BTG1 AC005837.1 CD3E TFF1 SPOCK2 CREM GPR171 RPL11 ETS2 MEF2C SLC51B LEFTY1 HSPA2 ANO9 LTC4S BGN CAVIN2 IGHM CD8A CPVL FCRL5 ASCL2 NXPE4
10 APOBEC3G DNAJA1 AL355075.4 KLRB1 AGR2 CD2 TNFAIP3 HOPX RPL19 SLC12A2 HLA-DRB1 MS4A12 CD24 HIST1H3A EPCAM HDC C1S SOX18 LINC00926 CREM MNDA FKBP11 KRT18 SPINK4
11 LAG3 HSPA8 HIST1H2BH TMSB4X CES2 CREM SRGN TRGC2 RPL32 CLDN4 CD19 UGT2B17 CDH1 LINC01623 CLDN4 KRT1 C1R CLEC14A BLK CCL4 LST1 SPAG4 KRT8 REG4
12 HCST TPT1 NRARP ACTB ANXA4 TNFRSF18 CCL5 CD8A MAL RNF43 HLA-DQA1 SDCBP2 PLCB4 HIST1H2AH LGALS3 MAOB COL5A2 CDH5 CD37 DUSP2 IGSF6 POU2AF1 LGALS4 MT1E
13 CST7 AC058791.1 Z93241.1 TRBC1 MAL2 TNFAIP3 DNAJA1 CD7 GIMAP7 FERMT1 HLA-DPB1 TMIGD1 AHCY AL031777.3 KRT20 TPSD1 PDGFRB CALCRL TLR10 CTSW C5AR1 CCR10 CEACAM6 VSIG2
14 PRF1 TRBC1 DNTT CD4 CDH1 CD3G CST7 GZMM TPT1 SOX4 CD74 SLC9A3 TSPAN8 IER5L TUBA1C GCSAML NOTCH3 EMCN HLA-DPA1 GZMB NCF2 IGHG2 ETS2 ZG16
15 GZMB TSC22D3 HIST1H3H FYB1 FHL2 IL2RA NR4A2 TMSB4X RPL21 ELF3 HLA-DPA1 C2orf88 TMEM176B CSKMT SELENBP1 CLU FBLN1 PALMD POU2F2 CRTAM SPI1 TENT5C SMIM22 HMGCS2
16 IFNG JUNB HES1 RORA EPCAM CTLA4 DUSP2 CD3E RPS27 ENGASE BLK C1QTNF12 PLPP2 SNAI1 ELF3 VWA5A COL5A1 PCDH17 CD74 SAMSN1 CSF1R IGHGP TSPAN6 AGR3
17 TRBC2 SPOCK2 RASD1 CORO1A LGALS4 TRAC JUND EVL RPS8 VEGFA EZR CDHR5 PRSS3 HIST1H3H CD24 IL1RL1 EMILIN1 JAM2 FCRLA DNAJA1 MS4A4A IGKV4-1 IFI27 TCEA3
18 CD3D EIF1 TBX3 RASGRP1 RAB25 CD3D REL SH3BGRL3 CD40LG RRBP1 AL121944.1 BTNL3 ETS2 HEXIM1 RRBP1 FCER1A SULF1 PLVAP TXNIP JUND PLA2G7 DUSP5 PERP ADH1C
19 CD2 MYADM HIST1H4C CKLF SPINK1 TNFRSF1B SELENOK XCL1 RPL30 ZNF703 BASP1 TSPAN1 CDX2 HIST1H2BB TSC22D1 SLC45A3 MXRA8 MMRN2 HLA-DPB1 CXCR4 PLXDC2 HERPUD1 PIGR PHGR1
20 TIGIT ICOS AC023157.3 RAC2 MDK DUSP16 PIK3R1 CD247 RPL5 GOLIM4 REL CA2 ALDH1B1 HES1 FOS CTSG COL12A1 FAM167B RALGPS2 HCST FPR3 XBP1 CLDN3 LGALS4
21 GZMK RORA HIST1H3A ARHGDIB CEACAM6 CD3E TUBA4A GZMA RPL10 SOX9 YPEL5 SLC1A1 CDCA7 NRARP ARAF PTGS1 FOXF1 SLCO2A1 LINC02397 SRGN MPEG1 SEC11C DSTN CA12
22 TRAC RPLP1 HIST1H2BG SPOCK2 DSG2 GBP2 JUNB CD52 RPS15A ANO9 GNG7 PKIB KRT8 SOX4 HNRNPH1 RGS13 COL14A1 RAI14 CD19 CD3D CLEC7A RAB30 PYGB SPDEF
23 TNFSF4 ZFP36L2 HOMER1 PFN1 SMIM22 ARID5B KDM6B HCST TRAC PCK1 NR4A2 ALDOB CLDN3 SOCS1 RBCK1 CSF1 CARMN SNCG HLA-DQA1 METRNL LILRB4 SSR4 TXN ERN2
24 CD3G LTB RND3 RPLP1 CREB3L1 TNFRSF4 NKG7 LCK RPS13 CENPF CXCR4 AMN KRT18 C6orf120 CDX2 HPGD TPM2 CYYR1 CD22 CLEC2B FPR1 IGHG3 AC103702.2 ELF3
25 CD7 YPEL5 TCIM LINC01871 ST6GALNAC1 TANK H3F3B KLRB1 LDHB ZNF331 SLC17A4 DSTN MAFB EPS8L2 AKAP12 COL4A1 THSD7A TCL1A HLA-C SLC7A7 PIM2 KLF5 KLF4
26 CCL4L2 ARL4C C6orf120 LAT KRT19 TRBC1 BTG1 IL2RB RPL3 IRF8 VSIG2 CD9 FOXQ1 MYO7B MITF SPARC ZNF385D LYL1 TNFAIP3 CSTA IGHA1 CD9 TSPAN1
27 PDCD1 ZNF331 AL031777.3 STK17B CDH17 RAP1A XCL1 S100A4 RPS14 KLF2 CA1 PPP1R1B HIST1H4C CCNL2 ADCYAP1 RASL12 VEGFC HLA-DRB1 HSP90AA1 KCTD12 CD79A ATP1B1 MLPH
28 ITM2A CCR7 MAFB OXNAD1 GALNT5 CYTIP KLRF1 ITGA1 PIK3IP1 CD37 CDKN2B TKT PPP1R10 RHOB CSF2RB C11orf96 FZD4 RPL11 UBC C1QA ANKRD28 ZNF703 CDHR5
29 HLA-C UBC POU3F1 GMFG CDC42EP5 PTPRC TUBB4B PTPRC FYB1 LY9 PI3 ATP1B1 AC005837.1 ACADVL TYROBP LUM KDR HLA-DQB1 HLA-A C1QB PRDX4 ZKSCAN1 PDK4
30 CHST12 CNOT6L EPPK1 SH3BGRL3 AGR3 LINC00513 AREG XCL2 RPL35A TCF4 CDHR2 ACSL5 RND3 MUC13 BTK DKK3 SOX17 RPS8 TRBC2 TNFAIP2 SLAMF7 CDH17 PIGR
31 CXCR6 KLRB1 SOCS1 CXCR6 SLC44A4 SRGN ANXA1 ACTB BTG1 KDM6B ENTPD8 VIL1 LINC01970 NUMA1 GLUL CYGB PREX2 IRF8 CXCL13 MS4A7 FKBP2 CLDN4 ABCC3
32 HLA-A H3F3B EGR1 CD52 PLA2G10 PBXIP1 TSC22D3 IL7R LTB LINC01781 FCGBP DMAC1 AL139274.2 CD9 ACSL4 LAMA4 ERG RPL19 DYNLL1 SLC8A1 SSR3 SOX4 L1TD1
33 CD27 TNFRSF4 VEGFA MYL12A CLDN3 SH2D2A FOSB TRBC1 RPLP1 JUND CHP2 KRTCAP3 EPPK1 ATF3 CAVIN2 ANTXR1 TIE1 RPL32 GNLY MRC1 IGHV1-24 SOX9 AGR2
34 LCK ZC3H12D CLDN4 CISH REP15 ARHGDIB HSPA8 TRBC2 RPS16 LYN PLAC8 MLEC CDKN1C AC103591.3 GALC ASPN MYCT1 RPL34 PTPRC AC020656.1 UBE2J1 DSG2 OLFM4
35 CD3E LINC00513 PPP1R10 TMIGD2 FAM3D AC058791.1 IL7R CD69 TOMM7 NFKBID KRT20 PPA1 ELF3 CD46 CD83 HEYL CLEC1A SMIM14 HSP90AB1 RAB31 IGHG4 CDCA7 CA2
36 CORO1A RPS3A ELF3 PBXIP1 TPM1 HLA-A MCL1 TXNIP DUSP1 HLA-DQB1 GDPD3 RAB25 AC023157.3 STAT6 BMP2K LHFPL6 FAM110D RPS3A ZNF331 FCGR3A SDF2L1 FAM3D FAM13A
37 ACTB KDM6B CEBPB CCR6 IFI27 DNAJA1 EIF1 STK17A KLRB1 HLA-DMB HSD17B2 IFITM3 EGR1 VEGFA LEO1 TBX2 ADGRF5 TCF4 PRF1 C1QC GNG7 TMEM176B TCIM
38 TMSB4X ANXA1 AL118516.1 MYL12B CD24 SARAF MYADM ID2 RPS6 NR4A1 SCIN PRR15 CLDN4 GPCPD1 CAPG MYL9 SELP RPL9 HSPA8 HCK CD38 PPA1 ST6GALNAC1
39 SH3BGRL3 DDX5 CEBPD BCL11B NANS G3BP2 MAFF CLEC2D RPLP2 RPS8 DHRS11 APP SNHG7 ARGLU1 LMNA SDC2 HSPA12B RPL21 UBB CD86 IGLC3 APP AOC1
40 ID2 RPS27 RHOB CD6 LGALS3 ETS1 GZMM MYL12A RPL37 RPS20 SLC4A4 IFI27 POU3F1 AREG CD9 LOXL2 DOC2B RPS27 GZMM LRRC25 IGHV4-39 PRR15 TFF3
41 CLEC2B RPL34 PCLO TRBC2 TSPAN8 RUNX3 XCL2 GIMAP7 MALAT1 ZNF165 GPA33 ALDH2 EXT1 MLPH COL6A1 RASIP1 FCMR RAB27A LILRB2 EAF2 TMEM176A FAM3D
42 RBPJ SAMSN1 IER5 LCK KLK1 CACYBP DDX5 ZAP70 RPL24 GPR183 FAM3B PKP2 HIST3H2BB ANXA1 PCOLCE NNMT RPS27A ATP1B3 S100A9 PRDM1 NFIB PCK1
43 TOX TRAC ANO9 OSTF1 PERP SAMSN1 DYNLL1 FYB1 RPL14 CCR7 FABP1 LGALS4 DLL4 SRGN GPC6 TEK RPLP2 TIGIT C3AR1 SPCS3 ELF3 S100A14
44 TNIP3 RPS27A GADD45G PTPRC KRT8 STK17B SYTL3 GIMAP4 RPS3 ORAI2 CA12 EBPL EGR3 LAPTM4A GPR20 ROBO4 LTB APOBEC3G GPNMB IGHG1 LGALS3 HSD11B2
45 SIRPG PTPRC SOX9 LAPTM5 TMEM54 REL CSRNP1 CLEC2B CD48 FCMR FXYD3 TMEM176A RPL36 NFKBIA ISLR SELE BASP1 SH3BGRL3 PILRA TXNDC15 KRT19 ARL14
46 PFN1 ZFP36 PCK1 DUSP1 GALNT3 TIFA PTPRC CKLF RPL10A TMEM243 DHRS9 PGRMC1 CEBPB DUSP10 HIGD1B RBP7 RPL3 SLA CD163 NUCB2 CAMK2N1 FXYD3
47 HAVCR2 PNRC1 FOXQ1 ABRACL SLPI UBC HSP90AA1 ALOX5AP PFDN5 HLA-DQA2 CEACAM1 IMPDH2 VEGFA VIM CDH11 ADGRL2 RPL13A TMSB4X TIMP2 SELENOM SPINK1 CDC42EP5
48 LINC01871 ARID5B ELOB TNF PHLDA2 STAM EZR LCP1 CD3E SMIM14 COL17A1 CAMK2N1 ARHGEF11 ALOX5AP NDUFA4L2 CAV1 RPS12 NR4A2 VSIG4 CYBA SLC5A1 FABP1
49 CLEC2D FOSL2 PLCB4 FOXP3 PDLIM1 PFN1 ATP1B3 PFN1 RPL13A IGHM OTOP2 ZNF703 AL355075.4 ALOX5 IGFBP7 FILIP1 RPL10A CD3E OLR1 TP53INP1 PRDX5 KRT8
50 KLRD1 HSP90AA1 KRT18 TNFRSF25 ATOH1 FURIN FOSL2 RPLP1 RPS7 RPS27A TMEM54 TXN RPL13 IL18 EFEMP2 RAB3C POU2AF1 YPEL5 SIRPA IGKC AGR2 ATP8B1
51 RAB27A GPR183 HIST1H1D RNF167 MUC2 FYN H2AFZ ITGAE RPS28 SMAP2 SFN FAM3D ARC PLIN2 TGFB1I1 MGP RPS14 RGS1 EMILIN2 ISG20 PLPP2 IER3
52 IKZF3 NFKBIA H1F0 PPP1R18 PRSS8 PTPN22 GNLY STK17B RPS20 RPL11 GGT6 MYC ELOB PTGS2 NNMT LDB2 RPS23 LAG3 S100A8 CLPTM1L PHGR1 SLC44A4
53 SIT1 SELENOK IER2 VIM TFF3 RHOH BRD2 HLA-C RPL13 RPS12 SERINC2 LGR5 TBX3 ALDH1A1 PDLIM3 APLNR HLA-DMB RARRES3 PTAFR ICAM2 RNF43 KCNQ1OT1
54 LSP1 PBXIP1 CCDC88B ADA S100A16 TRBC2 RUNX3 PTPN22 FOS RPS27 PDE9A TOX3 C2CD4B ACOT7 PPP1R14A CAVIN1 CD52 VCAM1 SLC15A3 SDC1 TFF3 MTRNR2L1
55 GZMM ANKRD12 AC103702.2 ACTG1 LIMA1 DUSP4 FOS RAC2 RPS5 FAU PHGR1 SOX9 HIST4H4 CD63 FSTL1 PODXL RPS11 IFNG FCER1G FAM30A GOLIM4 KLK1
56 S100A4 HLA-A RNF43 ARHGAP30 C10orf99 TMSB4X SARAF CD48 TRBC1 RPL9 AKR1B10 NFIB KLLN LAT2 DAAM2 SYNPO LY86 ITM2A SMIM25 SEL1L PPP1R1B CLDN4
57 CD52 TNFRSF18 H2AFX CD247 TMEM176B ANKRD12 RNF125 OSTF1 RPL6 RPL34 KRT19 CRLS1 GDF15 BEX4 PLAT ARHGAP29 RPL18A BTG1 ITGAX MIR29B2CHG LCN2 AC023157.3
58 IL2RB REL CDK12 EVL LSR FAM107B PDCD4 GMFG RPL28 RGS2 SLC20A1 GGH RPL35 STXBP6 S1PR3 COL15A1 BCAS4 TUBA4A FGR CRELD2 GPRC5A TMEM54
59 XCL2 ATP1B3 JUN LPIN2 MISP TIGIT UBE2S TSEN54 TSC22D3 RPLP2 ADRA2A RCN1 RPS18 MYADM CCDC102B MMRN1 ORAI2 CD7 CFD HSP90B1 TRIM2 PTPRF
60 GNLY UBB CLDN3 SIT1 PLS1 FYB1 DUSP4 CYTIP CD69 RPL13A S100A14 QPRT PLK2 STX11 GJA4 NPR1 FAU PTPN22 LILRB3 ITM2C PROX1 IGFBP2
61 TNFRSF9 MCL1 RPL36 ALOX5AP DSTN BTG1 GTF2B SKAP1 RPS4X HLA-DRB5 PADI2 UCHL3 NR2F1 ARMH1 SLIT3 CD34 RPLP1 HSPH1 RASSF4 SPCS2 KRTCAP3 ITM2C
62 GPR174 ARID5A HSPA6 TNFRSF4 CAMK2N1 CXCR6 ZFP36L2 BCL11B RPL23A BCL2A1 HPGD TSC22D1 RHOB TDRD3 IGFBP5 SHANK3 RPL23A H3F3B PLEK FBXW7 TSC22D1 SMIM22
63 SEPT7 RPL9 TMEM238 TPT1 AOC1 CORO1B UBB ARHGDIB CD3D RPS3A PLCD3 DSG2 HOMER1 LYL1 PCDH18 FBLN2 EEF1B2 EIF1 TYMP IGLC2 H1F0 KRT20
64 RAC2 PTMA RPL13 CD69 GMDS ARL4C UBC CORO1A RARRES3 JUNB SELENOP PRDX5 CLDN3 SAMSN1 EDNRA SPARC TMEM154 CD3G IL1B PABPC4 RPS21 KRT19
65 MYL12A DNAJB1 NOP56 LCP2 ATP1B1 LCK FYN LAPTM5 RPS29 RASGEF1B AOC1 ESD RPS15 SDCBP GGT5 ZNF521 RPL10 CD2 ZNF385A MANF NOXO1 KRT18
66 ARPC2 P2RY10 BTG2 GPR171 RNASE1 RASGRP1 AC020916.1 RPS19 NACA RPS11 ARL14 ZDHHC9 PCK1 TIMP3 MFGE8 ADGRL4 RPL30 ANXA1 ADAP2 TRAM1 MLEC SPINK1
67 CLIC1 RPL19 HSPA1B PIM1 CLDN4 HLA-C CCL4 GPSM3 SARAF TSC22D3 ITM2C GPRC5A AL118516.1 ARHGEF6 ADAMTS1 CPLX1 RPL5 UBE2S MARCO HIST1H1C CDX2 REG1A
68 GAPDH CYTIP MARCKSL1 ACTR3 MYO1D TNFRSF25 TRAT1 DDX17 RPL29 RPL21 TST PDLIM1 IER2 RASSF5 FERMT2 LINC01235 RPS20 XCL2 HLA-DMB LMAN1 MYC MT1X
69 CD99 CSRNP1 TYMS JUN PPP1R1B JUND ZFP36 COTL1 RPS18 RPSA MISP BACE2 KLF4 H3F3B ARHGEF17 PCAT19 HLA-DQA2 AC058791.1 SERPINA1 ANKRD37 LEFTY1 CDX1
70 GPR171 CD3D ID1 HLA-C PHGR1 LINC01943 HSP90AB1 SSBP4 RPL36 NR4A3 TMPRSS2 LGALS3BP AC099778.1 NR4A1 NKX2-3 CXorf36 MEF2C TRAT1 C1orf162 CPEB4 MRPS33 HBEGF
71 ALOX5AP RPL11 MKI67 RAP1A MUC13 GMFG NXT1 RARRES3 SLFN5 UBC TMEM236 SUCLG1 ID4 KDM6B SEPT4 CD93 RPS5 FYN SDS SPCS1 ALDH1B1 S100A6
72 PTPRC CD2 RPL35 HLA-A S100A6 CD247 HSPE1 JUN RPL18A RPL19 SULT1A1 IGFBP2 JUN AREG TFPI KANK3 RPL35A CNOT6L CFP ELL2 TKT CLDN3
73 PSMB9 CD3E RPS18 IL2RA CYP3A5 FAS METRNL MYL12B RPS23 LY86 CCDC68 PRR15L KCNQ1OT1 CTTNBP2 BICC1 TMTC1 SWAP70 CEMIP2 PMP22 TMEM59 S100A6 GOLM1
74 COTL1 ELF1 TFDP2 SSBP4 CD9 ACTB DCTN6 TRDC RPSA DNAJA1 SEMA3B CEACAM6 ID1 B4GALT5 CAV1 GJA1 RPS13 ELF1 CLEC10A ERLEC1 MET HES1
75 FYB1 NR4A2 RPS15 ANKRD12 PPIC HSPH1 CNOT6L HLA-E RPL18 RPS14 ANPEP STOML2 RPS19 ELL2 FBN1 SOX7 RPS16 CCL4L2 AQP9 BTG2 CD46 CKB
76 RASAL3 RPS12 CENPF RGS10 S100A14 HSPA8 SDCBP SEPT7 FXYD5 SNX2 EPS8L3 CCND1 FAM84A FTH1 CD248 NUAK1 RPSA GTF2B IRAK3 GLA IGFBP2 DSP
77 PARK7 PDCD4 TOP2A CAPG TST JAK1 LINC00513 MSN RPS9 GTF2B FLNB SLC25A6 KRT18 NFKBIZ MYH11 CRIP2 RPL29 HOPX SLC11A1 PDIA6 QPRT IFI27
78 ITGAE RPL21 ADA SKAP1 BLVRB SKAP1 AC058791.1 MALAT1 RPS11 RPS23 PRSS3 RPL7A RPL28 FTL KCNJ8 HSPG2 RPS18 CACYBP LGALS2 HSPA1B RPL12 FRYL
79 MYL6 FXYD5 CD99 ARPC3 KLF5 CTSC LITAF HLA-A UBA52 HERPUD1 PIGR DCTPP1 RPS2 GRAP2 ABCC9 FGD5 RPL37 LCK TNFSF13B NR4A1 S100A10 TMEM238
80 MIR155HG HSP90AB1 TUBA1B SIRPG SDCBP2 ISG20 RNF139 PIM1 FKBP5 EEF1B2 CLDN23 NAA20 IER5 FOSB IL34 COL4A1 RPS7 RNF19A CXCL8 PDE4B CLDN1 ATF3
81 HLA-E TAGLN2 TUBB SEPT1 BACE2 TBC1D4 HLA-C BTG1 RPS15 EIF1 CA7 STXBP6 DDIT3 LMO4 MYLK BCAM RPS6 ICOS RNF144B SEC61B RAB25 SERPINA1
82 CCND2 S100A4 HMGB2 PAXX CEACAM1 ZC3HAV1 H2AFX SPOCK2 RPS2 RPL10 CHP1 HSD17B12 RPL12 GRASP CAVIN1 HTRA1 RPL14 DOK2 ADGRE2 HSPA5 LGR5 NR4A1
83 LCP1 HLA-C NUCB2 ARL6IP5 S100A10 SH3BGRL3 CD8A JAK1 RPL7 HLA-DMA SLC44A4 ANXA4 H1F0 DNAJA1 SPARCL1 TMEM255B RPS28 HSPE1 SLC31A2 KLF2 SPTBN1 LGALS3BP
84 LYST FYB1 MYL6 KRT18 CD52 TRBC1 PRPF38B RPL4 CCDC50 VILL KRT19 PCLO NR4A3 RARRES2 NOVA2 PFDN5 TRAC NRP1 KCNQ1OT1 TOX3 CHCHD10
85 GIMAP7 FAU EID1 FCGBP ARL6IP5 ARL4C ARL6IP5 RPL27 RPL32 LAMB3 SLC25A5 TMEM238 UBB KANK2 FAM69B RPL4 H2AFZ TREM2 H1FX CDC42EP5 HEXIM1
86 RARRES3 ARHGDIB CAPZB HEPH UBE2D3 KLF2 SUN2 GPSM3 LINC00513 GOLM1 MRPS33 RPS21 NFE2L3 SNAI2 CADM3-AS1 CXCR4 LINC00513 FCGR1A UBC RPL7A EGR1
87 SLFN5 TRBC2 APBB1IP IGFBP2 HSP90AA1 GPR65 CD99 RPL8 RILPL2 LGALS4 PRSS33 PHLDA2 RAB32 DDR2 EXOC3L2 RPL13 ARL4C FCN1 IGHM VIL1 MT2A
88 HOPX EZR ACAP1 TMEM176A SMAD7 POLR2A TMA7 FAU RPL3 FBLIM1 AC103702.2 MALAT1 C1orf162 TAGLN WWTR1 DRAM2 CLEC2D THEMIS2 JUN ACSL5 ID1
89 ACTG1 CCR6 MBNL1 CDX1 KLRB1 PIP4K2A ARPC2 CCNI CMTM6 DSC2 PRDX4 CDC42EP5 BST2 CSPG4 IGFBP7 CCDC50 RGS2 RNF130 PPIB DMAC1 NEAT1
90 SUB1 BCAS2 GIMAP4 SMIM31 UBE2B DNAJB1 PAXX PTPRC FOSB ETNK1 TGFBI IER3 EMP3 RUNX1T1 THBD SP110 TSC22D3 LAIR1 HSPB1 RRBP1 VEGFA
91 SEPT1 ZC3HAV1 GPSM3 CDA CARD16 CMC1 AES RPS4Y1 RPLP1 MEP1A GOLIM4 NAALADL2 RNF130 ANGPT1 PROS1 RPS2 LDHA RNASE6 HSPA1A IMPDH2
92 MT2A TIPARP CORO1B FAM213A BIRC3 RGS2 TRIR CD3G RPL10A PLCE1 MARCKSL1 AL021453.1 SKIL COX7A1 S1PR1 STX7 CYTIP HLA-DQB1 HSPA6 DSP
93 CD84 UBE2B IKZF1 DSP CLEC2D SAMSN1 CAPZB PBXIP1 PRDM2 BEST4 RPLP0 PPDPF SELENOK GJC1 CAV2 RPL8 COTL1 KYNU SLC40A1
94 PTTG1 HSPH1 COTL1 MVP RGCC CD69 DDX5 GMFG RPL23A SMIM22 MDH2 RGS16 BCL2A1 FAM162B POSTN RPS15A CD52 EPB41L3 PGRMC1
95 GIMAP4 RHOH PIK3IP1 GFPT1 GATA3 ZC3HAV1 SON RPL22 ODC1 ABCA5 MRPS35 HIST3H2A ICAM1 EPHA3 FABP4 RPS9 ARPC2 DMXL2 RSL1D1
96 CD247 CD44 LCP1 TSPAN13 TMEM173 NCL MBNL1 JUNB DAPP1 RNF186 UQCRC2 RPL37A SEC11A CSRP2 FSTL1 TRIM38 PFN1 SLCO2B1 ITGA6
97 MYL12B HLA-E B2M TMPRSS4 FOSL2 CALM1 PDCD4 RPL38 DDX5 MYH14 CTBP2 TLE4 HSP90AA1 GUCY1B1 AFAP1L1 RPL18 NR3C1 GNB4 MUC13
98 SLA ISG20 SLFN5 GPX2 RGS1 NASP CELF2 TRBC2 BCAS2 CES3 CCT2 TCIM HSP90AB1 RERG GALNT18 RPL28 SELENOK CXCL16 RPL23
99 EMP3 CLEC2D RBL2 SLC22A18 PDE4D TUBA1A RNF213 EEF1B2 LDLRAD4 PPP1R14D CDK4 SPPL2B SMYD3 PRRX1 STC1 CD53 SRP14 TREM1 TMC5
100 GUK1 IRS2 DRAP1 RRBP1 VIM PTMA CIB1 COMMD6 RPL30 TJP3 LGALS3 PPP1R15A IDS LINGO1 ENG NACA TUBA1A CLEC4E SLC25A6

separation of epithelial, stromal and immune cells

Cell split