knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p025n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p025n"
## 
## $loom_file
## [1] "_data/velocyto/p025n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 4285 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2572 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 KLRB1 MZB1 TNFRSF17 CMTM8 IGHG4 CPA3 ITLN1 S100A8 TRDC C1QA CAVIN1 ITLN1 XCL2 CCL13 BMX CD8A MS4A1 MS4A1 DERL3 CEACAM7 LEF1 PIGR
2 IL7R JCHAIN MZB1 BCL11B IGHGP MS4A2 REP15 S100A12 TRGC1 CLEC10A PRELP CLCA1 XCL1 CXCL14 TRPM5 NKG7 BANK1 BANK1 TNFRSF17 MS4A12 BCL11B ELF3
3 RORA IGHA2 DERL3 PASK MZB1 TPSAB1 ATOH1 FCN1 KLRD1 MRC1 OGN MUC2 TRDC CCL8 SH2D7 GZMK VPREB3 HLA-DQA1 MZB1 PRSS3 CTLA4 FABP1
4 ANXA1 ANKRD28 PRDX4 ICOS IGKJ5 RHEX SPDEF CSTA KIR2DL4 FPR3 MGP REP15 NKG7 CCL11 AZGP1 CCL5 TNFRSF13C HLA-DRA CCR10 GUCA2A FYB1 KRT8
5 TRAC TNFRSF17 FKBP11 TRBC1 TNFRSF17 CTSG MUC2 CLEC4E CD160 SEMA6B SLIT3 SPINK4 KIR2DL4 TFPI2 SH2D6 CST7 HLA-DRA HLA-DRB1 PRDX4 MISP TBC1D4 CLDN4
6 CD2 PABPC4 IGHA2 CD28 JCHAIN SLC18A2 MLPH FPR1 ITGA1 VSIG4 BGN BEST2 GZMB PTGDS GNG13 CD8B HLA-DPB1 CD83 FKBP11 SDCBP2 TRBC1 KRT19
7 ICOS IGKJ5 SDF2L1 IL7R SPAG4 KRT1 CLCA1 CD300E TRGV4 FCER1A CRYAB RAP1GAP KLRD1 RBP1 IL17RB GZMA HLA-DRB1 TNFRSF13C IGHA2 SFN TSHZ2 LGALS4
8 SPOCK2 TENT5C SEC11C CNOT6L GNG7 GATA2 TPSG1 S100A9 TMIGD2 C1QC HSPB6 SPINK1 HOPX PAPPA B4GALNT4 CRTAM TLR10 HLA-DQB1 SEC11C CA2 RPS27 CA7
9 TNFAIP3 HERPUD1 MANF SPOCK2 IGHG2 KIT MB AQP9 HOPX CSF1R FN1 TFF3 CD160 HAPLN1 HPGDS GZMM LINC02397 HLA-DPB1 UBE2J1 EPCAM TRAC CLDN3
10 CD3D DERL3 CRELD2 LEF1 SSR3 LIF BEST2 LILRA5 CCL5 SDS CHRDL1 FCGBP CST7 COL15A1 HTR3E CCL4 HLA-DQA1 HLA-DPA1 ANKRD28 CEACAM1 GIMAP7 SELENBP1
11 ARL4C SSR4 PHGDH SARAF RAB30 HPGDS SPINK1 LILRB2 NKG7 C1QB SERPING1 ERN2 CD7 GGT5 OGDHL GZMH HLA-DPA1 HLA-DRB5 JCHAIN DSC2 LTB MT1G
12 CD3E IGHA1 CCR10 GPR183 FCRL5 VWA5A SPINK4 AC245128.3 CD7 DNASE1L3 ARHGAP29 B3GNT6 TIGIT STMN2 PTGS1 HCST CD79A VPREB3 IGHA1 KRT20 PIK3IP1 S100A14
13 PDE4D DUSP5 UBE2J1 INPP4B IGKV4-1 KRT81 TFF1 PRAM1 SLFN12L MS4A6A LHFPL6 REG4 TRGC1 SFTA1P POU2F3 GNLY CD74 CD74 SSR4 TSPAN1 RPL30 UGT2B17
14 CD3G SEC11C PSAT1 KLRB1 IGHG3 LTC4S ENTPD8 VCAN PLEKHF1 CPVL IGFBP5 WNK4 FASLG EMID1 COL27A1 XCL2 PAX5 CD37 XBP1 CA4 RPL32 SOX4
15 S100A4 FKBP11 PDIA6 PTGER4 SSR4 ANXA1 ST6GALNAC1 CLEC7A LINC01871 MS4A4A RERG KLK1 CCL5 CDH11 HTR3C CD3D CD79B CXCR5 SDC1 MYH14 CD28 HES1
16 TRBC1 POU2AF1 PDIA4 FYB1 IGKC TNFAIP3 CREB3L1 CFP CTSW AXL CALD1 AGR2 SLA2 CLEC14A TREH CD3E CD37 BCL2A1 SSR3 TMEM45B CD3E PHGR1
17 TPT1 HSP90B1 SSR3 CXCR4 SEC11C KLRB1 KLK1 CD36 GPR171 AIF1 FILIP1 SPDEF LINC02446 NID1 CCSER1 PRF1 LINC01781 GRASP HSP90B1 PPP1R14D CCR7 TSPAN8
18 CD40LG PRDX4 EAF2 TRAT1 SPCS2 C20orf204 REG4 AC020656.1 LINC02446 LY6K C16orf89 ST6GALNAC1 LINC01871 EDNRB ANXA13 RUNX3 HLA-DQB1 RUBCNL HERPUD1 CHP2 SARAF ADRA2A
19 CCR6 SSR3 NUCB2 BTG1 UBE2J1 ID2 TFF3 NCF2 XCL1 STAB1 ADAMTS1 ANO7 IL2RB COL3A1 PAK3 CD7 POU2F2 CD79A SPCS2 TSPAN8 CD3D C10orf99
20 CREM MIR29B2CHG IGLL5 CD2 AC104699.1 SRGN RAP1GAP TLR2 CD3G CD1E HTRA1 RNASE1 METRNL LINC01082 ADGRG6 CTSW TCL1A LINC01781 RAB30 TST TRBC2 HMGCS2
21 CD6 UBE2J1 SPCS2 RPS27 DERL3 TNF FCGBP MNDA CD3D CLEC7A THBS2 MCF2L PTPN22 NOVA1 IGSF3 IFNG BLK BLK CLPTM1L AOC1 RPS3A SMIM22
22 GPR183 RAB30 CLPTM1L ANKRD12 MANEA CLU MUC4 C5AR1 XCL2 SLC8A1 CCDC80 ATOH1 AUTS2 FBLN1 OBSL1 PIK3R1 CD19 CXCR4 SPCS1 SLC26A3 IL7R PCK1
23 LINC01871 XBP1 HSP90B1 MAL PABPC4 IL7R AGR2 MS4A6A GIMAP7 CSF2RA COX7A1 MUC4 PRF1 ADGRL3 AFAP1L2 PTPRC FAM177B MEF2C FKBP2 CLCA4 MAL GOLM1
24 CD4 FCRL5 DDOST RPS29 HERPUD1 DNAJA1 ZG16 VNN1 HCST GFRA2 TIMP3 ZG16 TMIGD2 LUM PSTPIP2 XCL1 LY86 REL DUSP5 FXYD3 RPS29 MTRNR2L1
25 RUNX3 TRIB1 SSR4 SRGN DUSP5 S100A4 RNASE1 CLEC12A ABI3 MS4A7 DPT MLPH GPR65 ABCA8 KLK11 TRAC LINC01857 PAX5 SPAG4 GPA33 PASK KRT18
26 SARAF SPAG4 FKBP2 RPS3A IGLV3-1 H3F3B AGR3 AIF1 EVL CD209 ISLR SERPINA1 GZMA CYGB HCK GZMB HLA-DRB5 HLA-DQA2 SDF2L1 PRR15 CD2 NXPE1
27 SAMSN1 FKBP2 SEC61B CREM XBP1 TRBC1 GALNT5 FGR GZMA MPEG1 SRPX DLL1 CTSW FOXF2 HIP1R ARL4C MARCH1 HLA-DMB SEC61B CDHR5 SPOCK2 KLF5
28 MYBL1 SDC1 JSRP1 CCR6 SPCS1 TUBA1A MCF2L CPVL CLIC3 C5AR1 TNXB GALNT5 HCST EMILIN1 LIPG IL7R LINC00926 CCR7 MANF TMEM54 RPS26 CA12
29 TRBC2 PRDM1 SPCS3 ITK SPINK2 FOSB FOXA3 CD14 SCML4 VMO1 FBLN2 ENTPD8 CRTAM DCN AVIL CD2 CD52 ARHGAP24 SPCS3 HMGCS2 ARHGDIB HSD11B2
30 FYN UBC SELENOS TRAC CD27 BHLHE40 SCNN1A FPR2 ADRB1 RAB7B SPARC FAM3D LDLRAD4 NEGR1 LRMP HLA-A RALGPS2 NFKBID PDIA6 CGN RPL21 CDHR5
31 PTGER4 CCR10 MEI1 RPS12 FKBP11 ARL4C CDC42EP5 SLC11A1 TMSB4X LYZ COL12A1 ELF3 PIK3R1 SCARA5 DCLK2 TRBC2 LTB RPS20 IGKJ5 FABP1 RPL37 CDC42EP5
32 FYB1 SPCS2 SPCS1 RPS27A ZBP1 DUSP6 WNK4 MPEG1 GZMB IL1B PLAC9 RAB26 SYTL3 EDIL3 CAMP METRNL SWAP70 SWAP70 RASGRP3 CDH17 RPL34 ABCC3
33 CD28 HSPA1B HERPUD1 TSHZ2 POU2AF1 CD83 SERPINA1 CD93 CD3E PLA2G7 NNMT HSD11B2 SH2D2A C1S NCMAP TMSB4X HLA-DMB SMAP2 GNG7 MEP1A RPS12 MT1E
34 LTB SEC61B FCRL5 SATB1 PNOC SERTAD1 GPR153 PILRA STK17A IGSF6 WISP2 FRYL CLIC3 CALD1 CD300LF PTPN22 IGHD EBF1 CYBA SMIM22 GIMAP4 CD24
35 TMSB4X FNDC3A JCHAIN RPL32 TENT5C TNFRSF25 FAM3D IRAK3 IKZF2 AC020656.1 SPARCL1 KRT18 FYN PITX1 BCAM GPR65 RPS23 RPS27 TRIB1 C10orf99 RPL9 FAM3D
36 SRGN SPCS3 SEL1L ARL4C B4GALT3 CKLF ERN2 IL1RN CD96 TGFBI GPNMB LGALS4 CCL4 CFH GDPD5 CD3G LYL1 RILPL2 CD79A CLDN3 RPS27A MIR194-2HG
37 ARHGDIB EIF2AK4 CHPF RPL30 MIR29B2CHG NFKBIA S100P ACSL1 LCK HLA-DOA C3 TPSG1 IL21R GNG11 MAP7 CXCR4 RPL11 LYN FCRL5 CLDN23 PTPRC ID1
38 CCL5 TNFRSF18 PPIB JUNB SEC61B GPR65 VSIG2 SERPINA1 IL2RB NLRP3 MEDAG PRUNE2 ITGA1 SPARCL1 FGFR4 TNFAIP3 CD22 AFF3 POU2AF1 SERINC2 RPL19 SIPA1L2
39 GPR65 EAF2 CNPY2 CCR7 ANKRD28 MYADM IFI27 TREM1 SLA2 TTYH2 IGFBP7 HEPACAM2 IKZF2 APOE ALOX5 HOPX TXNIP TCF4 MIR155HG CDHR2 RPL11 DSP
40 ZC3H12D JUN LMAN1 ZNF331 CYBA CREM MUC13 LYZ CD52 CXCL16 COL3A1 FAM83E GNLY PTN TPM1 LINC01871 FCMR EZR JSRP1 SLC51B JUNB LEFTY1
41 SYTL3 AC020916.1 LMAN2 LTB CCR10 HPGD SMIM22 SMIM25 DZIP3 C1orf54 COL1A2 KRT8 RNF125 TFPI KRT18 CREM SMIM14 RPL21 PDIA4 PKIB RPL28 BEST4
42 SH3BGRL3 GNG7 AC104699.1 RPL21 PDIA6 CD69 BCAS1 IGSF6 ARHGEF3 EMILIN2 ABI3BP CDC42EP5 FOSL2 ADGRL2 PLEKHB1 ANXA1 EBF1 CD19 LMAN1 TMPRSS2 RPS3 CDX2
43 AC020571.1 LMNA GNG7 CD6 EAF2 FOS FER1L6 LST1 CST7 CXCL8 MEIS2 PIGR GPR171 MAMDC2 ZFHX3 FYN TCF4 LAPTM5 TXNDC15 CLDN4 RPS15A CES3
44 PDE4A FNDC3B ERLEC1 CD3D IGHA2 EIF1 CLDN3 RNASE2 PRF1 LPCAT2 FXYD1 WFDC2 LCK NR2F1 MTSS1 KLRD1 TMEM154 RPS11 TPST2 FBLIM1 GPR183 CDX1
45 TNFRSF25 SPCS1 IGHA1 RPL28 FAM30A IL4I1 ANO7 TYROBP KIR3DL2 FGL2 TNS1 SCNN1A GZMM ADAMDEC1 PTPN18 HLA-C FCRLA RPS8 SELENOS SLC44A4 ANKRD12 SOX9
46 CD52 CYBA SIL1 RPS26 PRDX4 DDX5 LGALS4 PTX3 RAC2 RNASE6 RSPO3 IGFBP2 KIR3DL2 HAS2 PLCB2 TNFRSF1B RPL21 FCMR TMEM59 ANPEP RPL35A AC254629.1
47 CD5 PIM2 DUSP5 RPS15A SLAMF7 TIPARP ELF3 EREG ZAP70 HLA-DMB COL6A1 L1TD1 TMSB4X COL1A2 HOTAIRM1 NR4A2 RPS27 LY9 PPIB MUC12 LDHB EPS8L3
48 SH2D2A TSC22D3 LY96 RPL37 BHLHE41 LAT WFDC2 MIR3945HG SELPLG PTGS2 PODN CLDN4 LAYN NNMT RASSF6 TRBC1 RPS11 RPL11 SLAMF7 AKR1B10 RPL38 CDC42BPA
49 LCK MANEA TMEM258 ARHGDIB SUB1 NFKBID CLDN4 MEFV TRG-AS1 RAB31 CILP ARFGEF3 CD96 VCAM1 KRT8 MYL12A RPS8 RPS23 CD38 LMO7 RPS28 NRARP
50 EML4 PDK1 ANKRD28 SLC2A3 PIM2 AC020571.1 FXYD3 IL1A ITGAE PLD4 SOD3 ANKRD18A CREM EPHA7 MYO1B DUSP2 CXCR4 RPL13A CD27 MUC13 BTG1 TCIM
51 RPLP1 GLA KCNK12 RPL13 DAPP1 PRNP URAD IL1B ACTB CACNA2D3 SFRP2 KLF4 CCL4L2 ADAMTS4 TAS1R3 CD247 RPL32 LY86 RPN2 KRT8 CXCR4 AGR2
52 IL4I1 IGKC SDC1 RPL11 H1FX PTGS2 KRT18 OLR1 PTPN22 TYROBP DLC1 MT1G CD3E ADAMTS1 MARCKSL1 ARHGDIB RPS21 RPL32 TENT5C CEACAM6 MALAT1 TMEM54
53 SYNE2 BHLHE41 ALG5 RPSA UBC DNAJB1 KRT8 HCAR3 LCP2 CD93 MYL9 PCK1 CD3G COL14A1 PLCG2 CLEC2B RPL19 IRF8 LMAN2 PCK1 SLFN5 SULT1B1
54 MYL12A BTG2 TMED9 CD3E TNFRSF18 LTB PCK1 RNF144B SH3BGRL3 CD86 EFEMP1 SOX4 ARHGAP9 PLEKHH2 PTPRJ ALOX5AP RPLP2 SESN3 AC104699.1 CDH1 CD48 SNORC
55 MYADM TRAM1 HSPA5 TOMM7 JSRP1 GADD45B TSPAN1 ASGR1 ID2 F13A1 ITIH5 CLDN3 TNIP3 FOXF1 CCDC28B TUBA4A RPS20 CYBB TMEM258 CA12 RPS13 CKB
56 PBX4 SDF2L1 SLAMF7 CD3G IGHG1 ALOX5AP HEPACAM2 RBP7 SSBP4 CYP2S1 SLC7A2 PLCB4 NR4A2 COL5A2 EHF BTG1 RPL13A POU2F2 NUCB2 GUCA2B RPL36 ID4
57 RPS19 CXorf21 PLPP5 TPT1 AQP3 PHLDA1 KRT19 LILRA2 ABHD17A LMO2 CPE CRACR2B MAP3K8 PLAT HOXA3 TIGIT SP110 HLA-DMA CRELD2 PIGR ICOS BICDL2
58 PBXIP1 FBXW7 P4HB RPL34 HSP90B1 CD44 TCIM ITGAM COTL1 CFP TGFB1I1 PHGR1 CD3D CCDC102B MISP3 SH3BGRL3 RPL10A NR4A2 SEL1L SLC9A3 FKBP5 IGFBP2
59 PTPRC RAPGEF2 XBP1 RPS3 CD38 JUND KRT20 TNFSF13B CKLF CYSLTR2 DPYSL3 CHDH CD247 IGFBP5 ELF3 PIP4K2A STX7 SNX2 MEI1 PDZD3 SESN3 CHP2
60 SATB1 HSPA5 RPN2 RPL19 IGHA1 EGR1 RETNLB CD68 SLFN5 ASGR2 TFPI IFI27 DUSP4 LTBP2 CHDH TNFSF9 PARP15 CMTM6 PIM2 LGALS4 RPL13 ADIRF
61 ETS1 MANF POU2AF1 RPS13 PRDM1 H2AFZ HSD11B2 TMEM170B AOAH CD163L1 CAVIN3 URAD AL031280.1 SAMD11 IFI6 SLA IRF8 LINC00926 UBC SULT1B1 RPS6 MUC4
62 PTPN22 CREB3L2 CYBA ANXA1 CXorf21 NFKBIZ NEDD4L NLRP3 ALOX5AP LST1 SEMA3E MT1E SPRY1 COL5A1 ATP2A3 SYTL3 LAPTM5 ARHGAP25 TRAM1 DSG2 RPS21 CA2
63 CXCR4 PDIA6 SEC61G RPLP2 FKBP2 UBE2S GSN SLC7A7 GZMM ITGAX MFAP5 VSIG2 PDE4A LAMA4 FHDC1 CALM1 HLA-DQA2 RPLP2 PRDM1 KRT19 RPL31 DMBT1
64 CD247 FOSB TXNDC15 TNFAIP8 PPIB NEU1 IL1R2 NFAM1 TXNIP ADGRE2 COL6A2 GMDS ID2 BMP4 MATK CCL4L2 RPSA RPL30 MANEA PRSS8 RPS25 KRT20
65 RPL28 ANKRD37 SPAG4 RPL9 SPATS2 GLUL B3GNT6 C3AR1 SKAP1 TBXAS1 SDC2 TCIM TRGC2 CCL2 ZNF608 SRGN RPL9 KDM6B EAF2 MAL2 CNOT6L PRSS3
66 MGAT4A DAPP1 ALDH1L2 PABPC1 TMEM258 SKP1 PTPRF CYBB TRBC2 ADAP2 FSTL1 TPM1 PGK1 MMP2 KIT RNF125 FCER2 RPL23A ERLEC1 IFI27 CLEC2D MTRNR2L12
67 STAT4 NFKBIA SSR2 RPS6 FNDC3A KDM6B PHGR1 SLC24A4 CD84 OLR1 GREM1 RASD1 PTPRC COL4A2 CDHR5 RARRES3 RPL27A RPL19 IFNAR2 TRIM31 ARL4C PLCE1
68 HLA-A SELENOS SELENOM RPL23A TSC22D3 JUNB TPM1 CXCL8 CORO1A LILRB5 SMARCA1 NEURL1 REL COL1A1 TM4SF5 DUSP4 ORAI2 CD52 EIF2AK3 S100A14 KLRB1 EPCAM
69 PHLDA1 MEI1 LINC01480 RORA PDK1 EGR3 RASEF FGL2 SLC12A6 LGALS2 PALM CREB3L1 RANBP2 ADH1B SPIB AKNA MEF2C RPS27A DDOST GDPD3 NCK2 GPX2
70 PARP8 H1FX ENAM TRBC2 TMEM59 PTMA SLC44A4 OSCAR CISH HLA-DRB5 MFGE8 CAMK2N1 TNFRSF1B PDGFRA TPBG LYAR EEF1B2 RPS21 IGLV3-1 PLS1 RPL24 TMEM238
71 BTG1 LINC01480 TMED10 YPEL5 CREB3L2 ABRACL KIAA1324 LRRC25 NLRC3 EPB41L3 COL6A3 MUC5B ABHD17A MFAP4 TMEM176B PFN1 FAU BTG1 SUB1 AQP8 TPT1 TRPM4
72 RPSA IRF4 GMPPB RPLP1 FNDC3B DUSP1 KLF4 HCK SEPT7 SH2B3 PTGIS ATP2C2 NR4A3 A2M SOX9 S100A4 RPS6 RPS6 ITM2C ARL14 C12orf57 CDH17
73 TANK NR4A1 KRTCAP2 RPS21 IGHV4-39 FTH1 EPCAM HCAR2 BIN1 HLA-DQA1 ACKR3 SLC44A4 TRBC2 CTSK HEPACAM2 TRGC1 SESN3 RPL9 KDELR1 C19orf33 CDKN1B MISP
74 LCP1 PPP1R15A SERP1 RPS8 TP53INP1 NR4A2 PIGR CD163 LCP1 HLA-DQB1 PDLIM4 SLC12A2 MATK SPARC C6orf222 REL SP140 FCRLA PABPC4 HSD17B2 RPL23 SLC44A4
75 PFN1 MIR155HG TXNDC11 RPL23 SDC1 REL KAZALD1 ACOD1 PDE3B IL1A KRT24 CDX2 SAMSN1 COL6A1 PLPP2 LCP1 BCAS4 RPS12 CHID1 CDX1 RPLP2 AOC1
76 RPS29 ATF5 SUB1 FXYD5 PCMTD1 HSPA8 CAMK2N1 KCNE3 ARPC2 SPI1 KANK2 EHF G3BP2 TIMP3 AOC1 GUK1 RPL23A RPS28 RRBP1 CDKN2B-AS1 RPS4Y1 FAT1
77 ADGRE5 GAB1 DNAJC3 CDKN1B EIF2AK4 ZFAS1 MBOAT2 C1orf162 JAML THBD GNG11 ID1 SH3BGRL3 FABP4 GRK5 BCL11B RPL30 BASP1 ALG5 AMN TOMM7 ATP8B1
78 ID2 SEL1L TRAM1 RPL31 FAM49A SAP18 S100A14 MS4A7 CD2 FLT3 CYR61 HMGCS2 GAPDH ECM1 FYB1 ID2 RPL34 RALGPS2 ISG20 CES2 PFDN5 PCLO
79 STK17B HDLBP RABAC1 ARID5A IRF4 PRMT9 IRF6 AP1S2 SUN2 GNA12 LAMB2 DSP CBLB BMP5 TMEM176A AC026979.2 RPS27A RPL27 HDLBP CYP3A5 RPL10A PPP1R1B
80 TRAT1 SQSTM1 TMEM59 IKZF1 CLPTM1L SDCBP TCEA3 LILRB3 MATK CST3 TPM2 PTPRF HIC1 FBN1 SPTLC2 HLA-E RPS12 RPS29 TMED9 AC254629.1 RPL7 GPA33
81 RPS27A AQP3 TMEM208 GPRIN3 LINC01781 SNHG12 PRUNE2 CLEC4D PTPRC CD36 PRRX2 MTRNR2L1 ALOX5AP COL6A3 SOX4 RGCC RPS7 RPL38 LY96 FAM3D CCND3 AC103702.2
82 ABRACL MEF2C MANEA PTPRC LINC01480 TSC22D3 RFLNA CSF1R RARRES3 CD163 OMD UNC13B SDCBP AKAP12 CD14 ZNF331 RPS28 LDLRAD4 DPP7 CDX2 TIGIT CES2
83 ZNF267 IGKV3-20 CD79A RPL38 ADA2 PPP1R15A SYTL2 AC096667.1 PFN1 PDGFB C11orf96 SLC22A23 GZMH TMEM150C TLE4 CLEC2D SNX2 RPL37 DNAJC3 SULT1A1 SMAP2 AC023157.3
84 FURIN PDIA4 RAB30 CLEC2D CD79A MCL1 EHF GAS7 TBC1D10C RNF144B MPDZ FAT1 NR3C1 SULF1 AL390719.2 TSPYL2 RPL38 RPSA SEC62 SLC22A18 RPS23 LINC01970
85 SPART SUB1 CD38 ATP1B3 SERP1 IER5 GDF15 PLBD1 ACTR3 CD302 COL5A2 GDF15 PDCD4 WNT4 ITPR2 CNOT6L RPS3A RPS14 ST6GALNAC4 PTPRF RPL14 SPINT1
86 RGCC VIM TENT5C RGCC HMCES FAM107B TSPAN8 CXCL2 GPR174 RNF130 ANGPTL2 GALNT12 GATA3 SFRP1 ANO7 TNFRSF9 SYPL1 RPL27A OSTC SULT1A2 RPL5 RND3
87 CD48 CD79A SHMT2 FKBP5 SPCS3 PLIN2 SERINC2 CDA STK17B CLEC9A COL14A1 SIPA1L2 LITAF P2RY14 IL13RA1 LCK ARPC3 RPS3A TXNDC11 ELF3 CEMIP2 CAMK2N1
88 CALM1 PELI1 UBC LDHB EVI2B DDIT4 PLA2G10 EMILIN2 CD247 CD68 NDN HES1 SSH1 PCDH18 DEFB1 SAMSN1 CXXC5 CCDC50 ICAM2 GGT6 RPL12 ST14
89 LAT NEAT1 PIM2 FYN RPL3 FXYD5 RASD1 AL034397.3 GNPTAB C1orf162 PCOLCE FSIP2 CCND2 CHL1 SMTN ATP1B3 DRAM2 RPS10 IGKV4-1 STAP2 FXYD5 S100A16
90 PIP4K2A CLPTM1L FNDC3A RPL36 SMARCB1 HSP90AA1 SMIM31 NRGN OSTF1 TNFAIP2 GPX3 MAP7 CLEC2B CLMP MAGI1 ETS1 RGS19 EEF1B2 ZP3 PRAP1 RPS8 MAOA
91 RPS12 TP53INP1 PRDM1 RPS28 ICAM3 AREG VIPR1 DMXL2 ACTG1 ENPP2 THY1 AGR3 VPS37B CP AC103702.2 NR4A3 RPL37 SMIM14 CHPF TJP3 UQCRB OTOP2
92 GPR171 PPIB ASNS ELF1 ICAM2 LMO4 ID1 KYNU DENND2D EREG ADAM33 MTRNR2L12 RARRES3 TAC3 CYP3A5 AC044849.1 RPS14 SP110 FNDC3A DSP RPS14 FLNB
93 ATP1B3 IGLC3 OSTC MAF RPL36AL CAPG ARL14 LGALS2 RPS19 IL1RN ADH1B CA12 SEPT7 PCDH7 PAPSS2 SRSF7 RPS13 RPL10A SERP1 GPRC5A RPS16 TCEA3
94 REL LMAN1 PABPC4 RPL5 CCDC50 SNHG8 HID1 RAB31 TIGIT PXDC1 VEGFD CDH17 CNOT6L GPC1 ASRGL1 CEMIP2 RPS29 KLF2 HSPA5 TMIGD1 RPSA LGALS3
95 HCST KLHL6 BST2 RPS14 RPL10 UBB MT1G LRRK2 ITM2A GRK3 PCOLCE2 SYTL2 TIPARP C11orf96 S100A6 SARAF PFDN5 RPL34 SEC61G FRMD1 TNFAIP8 NXPE4
96 CLEC2D A1BG ST6GALNAC4 RPL35A TXNDC11 LMNA ATP8B1 CD302 MYL12B CLIC2 EHD2 NEDD4L LCP1 DKK3 SNORC FOSL2 RPS10 SH2B3 KRTCAP2 UGT2B17 ETS1 KLF4
97 HIPK1 KCNQ1OT1 LGALS1 PTMA IGKV3-20 VIM GALNT12 SPI1 LAG3 OGFRL1 SFRP1 GNE COTL1 NKX2-3 SPINT1 ZFP36L2 RCSD1 MARCKS TMED2 SELENBP1 RPS10 LGALS3BP
98 SDCBP JUND RPL10 ZC3H12D GLA TUBB4B TMEM184A AP003354.2 PTGER2 TCHH S1PR3 CDC42BPA ABCB1 MATN2 TMC5 DNAJA1 TRIM38 PTMA PLPP5 DHRS9 COMMD6 CA1
99 RPL38 HSP90AA1 YIPF2 CD48 GSTP1 SRSF7 ATP2C2 GPR84 BCAS4 ATP13A3 IL33 SH3PXD2A ARPC2 MRC2 GRASP STK17B CD53 EIF1 P4HB PHGR1 PBXIP1 SPIB
100 LAPTM5 C16orf54 KDELR1 SC5D ANKRD37 LEO1 TRPM4 FAM198B GZMH HLA-DMA LUM SOX9 CEMIP2 MXRA8 ARHGEF11 CD53 CCDC50 RPS7 AKR1A1 JUP GMFG RASD1

separation of epithelial, stromal and immune cells

Cell split