knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p021t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p021t"
## 
## $loom_file
## [1] "_data/velocyto/p021t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 6102 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2674 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 3 4 5 6 7 8 9
1 GZMK IL7R CLDN4 DERL3 SERPINA9 FAT1 LEF1 LINC01781 ZWINT COL4A2 MEP1A DERL3 KLRB1 BANK1 CXCL5 MS4A2 GZMH MZB1 DERL3 BANK1 CCL5 ANKRD28 AIF1
2 NKG7 CREM KRT8 IGLV3-1 SUGCT PIGR CCR7 BANK1 MYBL2 SPARCL1 CDX1 TNFRSF17 CD40LG CD83 MT1H GATA2 NKG7 XBP1 PRDX4 MS4A1 NKG7 NR4A1 AC020656.1
3 CCL5 RORA KRT19 PRDX4 TCL1A CEL MAL MS4A1 AC023590.1 NNMT RAB25 AC104699.1 SPOCK2 MS4A1 DCN SLC18A2 PRF1 FKBP11 FKBP11 LINC02397 GZMA MZB1 FPR1
4 GZMA SPOCK2 PIGR FKBP11 LMO2 ELF3 IL7R TNFRSF13C TK1 MGP MAL2 ST6GALNAC4 MAF LINC01781 BGN HPGDS GZMB JCHAIN IGLV3-1 LINC00926 GZMK MIR29B2CHG LILRB2
5 CST7 KLRB1 KRT18 MZB1 RGS13 LCN2 GIMAP7 FAM177B TYMS FSTL1 CDH17 IGLC1 CD3D NFKBID COL6A1 GCSAML GZMA ANKRD28 MZB1 IGHD CST7 DUSP5 CD14
6 GZMH TNFAIP3 CLDN3 XBP1 BCL7A CLDN4 LTB HLA-DRA UBE2C COL15A1 TMEM45B CRELD2 CD2 NR4A2 COL6A2 HDC CCL5 FKBP2 SEC11C FCER2 CD8A SDC1 OLR1
7 DUSP2 IRS2 PHGR1 SSR4 CD22 KRT18 PIK3IP1 BLK AURKB PPIC VIL1 FKBP11 CD4 HLA-DQA1 COL5A1 TPSAB1 CD8A JSRP1 XBP1 HLA-DQA1 HCST FKBP11 LYZ
8 CCL4 DNAJA1 ELF3 SPAG4 BACH2 SOX9 SELL RPS23 CDT1 CAVIN1 ARSE SEC11C TRAC MEF2C NNMT TPSD1 CTSW HDLBP TNFRSF17 TNFRSF13C APOBEC3G HSPA1B CD300E
9 CD8A SARAF DSP ERLEC1 LINC01857 GPRC5A RPL34 SMIM14 MND1 FBN1 SCNN1A MZB1 CXCL13 PAX5 POSTN RHEX CST7 IGHGP SSR4 HLA-DRA GIMAP7 TENT5C CPVL
10 NR4A2 ICOS PTPRD HERPUD1 MS4A1 SLC44A4 RPS12 CD74 BIRC5 GNG11 KLF5 TXNDC15 CTLA4 HLA-DRA COL5A2 MAOB GZMK SSR4 FKBP2 PAX5 CD2 XBP1 CSF1R
11 DNAJA1 TNFRSF18 CDHR5 SEC11C VPREB3 DSP RPL32 HLA-DPB1 GCSAM CAVIN3 MYH14 SRPRB CD3G SMIM14 RARRES2 CPA3 KLRD1 SEC61A1 SSR3 LY86 GZMH PIM2 SLC8A1
12 HCST SRGN DPEP1 FCRL5 FCRLA DPEP1 RPL11 MARCH1 GTSE1 COL14A1 POF1B SSR3 CD3E IRF8 CYGB KIT CCL4 GAS6 TXNDC15 CD79B CLEC2B DERL3 MS4A6A
13 CXCR4 S100A4 FAT1 SSR3 SMIM14 PHGR1 PASK HLA-DPA1 AICDA CFH FAM3B GMPPB TOX2 REL C11orf96 SLC45A3 APOBEC3G IGHG3 SELENOS SMIM14 RARRES3 FOSB CSTA
14 CTSW RGCC SOX9 FKBP2 RRAS2 SOX4 RPL30 CD37 CENPU LAMA4 C10orf99 PRDX4 PTPN13 FCRL1 SFRP2 TMEM233 EOMES SDC1 ERLEC1 HLA-DPB1 GIMAP4 JUN MNDA
15 GZMB ZC3H12D CYP3A5 TNFRSF17 RAPGEF5 PLCB4 RPS13 RPS8 KIFC1 PXDN TRIM2 SDF2L1 CD6 KDM6B TDO2 KRT1 RARRES3 TENT5C SDF2L1 CD74 CTSW TRIB1 IGSF6
16 CRTAM CCR6 POF1B DUSP5 LRMP VEGFA RPL9 VPREB3 ASF1B RAI14 SMIM24 HSD17B8 IL26 HLA-DRB5 CTGF GMPR GIMAP7 CEP128 LMAN1 CD22 GZMB GLA NCF2
17 DNAJB1 CTLA4 AL137077.2 SDF2L1 IRF8 GPX2 RPL19 RPL30 RMI2 ROBO1 SMIM22 MANF LINC01871 JUNB EMILIN1 CDK15 GIMAP4 IGHG4 NUCB2 VPREB3 A2M-AS1 JSRP1 LILRA5
18 TNFAIP3 BCL11B SMIM22 JSRP1 HRK FABP1 RPL5 RALGPS2 CDCA7 EHD2 AZGP1 JCHAIN FYB1 CD37 TPM2 TAL1 HCST IGHG2 SPAG4 HLA-DPA1 PRF1 HERPUD1 FPR3
19 SRGN PBXIP1 EPPK1 IGHG4 HTR3A MACC1 RPS27A IRF8 KIF11 COX7A1 FERMT1 CD38 TNFRSF25 EIF1 SPARC AC106739.1 FASLG PIM2 SPCS3 CD79A GZMM SLAMF7 HCK
20 DUSP4 CXCR4 MYH14 JCHAIN TNFRSF13C MYO6 RPS27 RPL32 ESCO2 COL4A1 EPHB2 SELENOS LCK CD79A IGFBP7 IL1RL1 CXCR6 RRBP1 JCHAIN LINC01781 CD3D FKBP2 TYROBP
21 GZMM FOXP3 SOX4 TENT5C DTX1 CYP3A5 RPS3A TXNIP CDK1 SMARCA1 EPCAM LMAN1 CXCR6 MARCH1 THY1 TPSG1 GPR174 IGHG1 IGKV4-1 FCRL1 IL2RB NEAT1 FCER1G
22 RUNX3 TRAC RNF43 IGHG3 MYO1E MTRNR2L12 RPL36 LINC02397 CDKN3 FERMT2 PRSS8 IGLL5 TNFRSF4 LY86 IGFBP5 CTSG LAG3 CHST2 IGKJ5 HLA-DRB5 CXCR6 HIST1H2BG SMIM25
23 ANXA1 GPR183 AGR2 IGKV4-1 HLA-DOB OLFM4 RPL3 RPS3A CCNA2 ANGPTL2 GPX2 TMEM208 TNFRSF18 HLA-DRB1 SPON2 SVOPL CLEC2B CREB3L2 PIM2 SELL SLFN5 CREB3L2 CD93
24 RGCC AC058791.1 TFF3 IGKJ5 NEIL1 AFDN TRAC ADAM28 C21orf58 GJA1 PRSS3 DNAJC3 FURIN HLA-DPA1 COL6A3 CALB2 F2R PDK1 SDC1 HLA-DRB1 TRGC2 ELL2 CLEC7A
25 UBE2S CD2 IFI27 GAS6 BCAS4 CCDC88B RPS3 RPL19 FAM111B MYL9 PRR15L CHPF CD7 CD74 CAVIN3 AL078590.3 CD2 CPEB4 SPCS2 CD37 STK17A SSR4 LST1
26 RARRES3 BTG1 HES1 IGHG2 MED12L FAM13A RPS4X RPL34 E2F8 ADGRA2 CDH1 ERLEC1 FKBP5 MIR29B2CHG PCOLCE ALDH1A1 IFNG FNDC3B JSRP1 HLA-DQB1 CD3G KCNQ1OT1 SERPINA1
27 ZNF331 HSPA8 GPRC5A SELENOM BLK AC103702.2 TXNIP RPL11 HIST1H3B CDH11 ESRP1 MEI1 S100A4 HLA-DPB1 C1S CLU CCR5 SDF2L1 IGHV6-1 RALGPS2 ARL4C IGKJ5 CD68
28 CD3D JUND NAALADL2 TXNDC15 HLA-DMB ST14 RPS15A CD79B NCAPG CCDC80 DSP RABAC1 LAT CD19 MT1M RAB27B CD3D SIL1 IGHG4 STX7 CD3E IGHG3 C5AR1
29 SERTAD1 LTB EPHB3 AC104699.1 CD19 XIST RPL38 RPS13 KIF2C FBLN2 S100P HSP90B1 TRBC2 WSB1 FSTL1 VWA5A GZMM SEL1L HSP90B1 BLK GNLY BTG2 FPR2
30 CD3E EIF1 KLF5 FAM92B CD40 LMO7 RPL35A EEF1B2 TPX2 TIMP3 WDR72 ALG5 PIK3IP1 GRASP DUOXA2 MLPH GPR171 IGKC ALG5 FCMR DTHD1 SPAG4 RASSF4
31 CD3G ZNF331 EPCAM SPCS3 PAX5 EPHB3 RPS26 CD79A CCNB2 GGT5 GDF15 NUCB2 LIMS1 SELL CALD1 ITGA2B ITGA1 HIST1H2BG FCRL5 MARCH1 KLRD1 NRARP IRAK3
32 IFNG TNFRSF4 GPX2 CYBA FGD6 EFNB2 RPL6 HLA-DQA1 TOP2A ANTXR1 DSG2 FKBP2 TMIGD2 PLAC8 CTSK LIF FCRL6 IGLC3 IGHG2 PLAC8 HLA-A IGLV3-1 PLXDC2
33 CD2 SAMSN1 AC103702.2 LMAN1 GCSAM PGGHG RPL37 RPS28 SHCBP1 CALD1 CDX2 DDOST CKLF CD69 THBS2 CADPS IKZF3 IGKJ5 PDK1 TLR10 TRAC CPEB4 CD163
34 ID2 HSP90AA1 ARSE PIM2 BASP1 ATP1B1 CD3D RPL35A CDCA8 ADAMTS2 EHF SEC61B IL7R C6orf48 FBN1 PLAT LINC01871 HERPUD1 SEL1L POU2F2 MATK UBC IL1B
35 TRBC1 DUSP16 GDF15 SEL1L AFF3 DST RPL13 RPS12 RAD51AP1 FAP PLS1 SPCS3 ITM2A VAV2 C1R PTGS1 TRGC2 ELL2 CLPTM1L CD52 XCL2 SQSTM1 MARCO
36 TNFSF9 CNOT6L PLXNB1 TRIB1 SWAP70 CENPF RPS16 RPS5 PBK PDLIM3 SOX9 RPN2 IL17A SNHG12 COL1A2 EMID1 CD8B IGLC2 LY96 RPL11 ITGA1 FNDC3A IL1RN
37 JUNB NFKBIA PLCB4 HSP90B1 EBF1 HEXIM1 RPS6 LY86 POC1A SERPING1 TMPRSS4 TXNDC11 ZNRF1 YPEL5 COL1A1 HPGD SLFN5 ZBP1 SELENOM RPS23 TRBC2 HDLBP OSCAR
38 CMC1 JUNB CDX2 SELENOS CD79B HBB RPL14 RPL18 GINS2 CRIP2 ABHD17C SPCS2 SIRPG OSER1 MXRA5 FCER1A LINC02446 IGKV1-5 BHLHE41 SPIB GPR174 EIF2AK3 S100A9
39 PTPN22 TRBC1 MISP ELL2 VNN2 LDHB RPLP2 RFC3 SULF1 CLDN3 KDELR1 GPRIN3 RPS23 MXRA8 CAVIN2 SAMD3 HSP90B1 TP53INP1 IRF8 MYL12A IGHG4 ADGRE2
40 CD69 CD7 SFN CD38 SPIB RPS14 RPS21 MME COL6A2 TSPAN8 SPCS1 GMFG TNFRSF13C COL12A1 TMOD1 HLA-A IGLV3-1 CRELD2 SWAP70 PTPRC IGHG2 CLEC4E
41 TRAT1 FOSL2 LCN15 MIR29B2CHG LINC01991 BTG1 TLR10 SUGCT AEBP1 GGT6 DERL1 MYO7A RPL13A CTHRC1 AKAP12 SH3BGRL3 SEC24A HERPUD1 RPS27 CMC1 NFKBIA FCN1
42 XCL2 TSC22D3 LGALS4 NUCB2 STX7 RPL7 RPS20 SPC25 MXRA5 S100A14 TMED10 SLA CYB5D1 MT1G CATSPER1 CD3G TXNDC11 MANF CR1 SH3BGRL3 FNDC3B EMILIN2
43 CREM TNFRSF25 TMC5 MANF LAT2 CD3E RPS18 HIST1H2AJ PRRX1 MUC13 MCUR1 PDCD1 NR4A1 CYR61 CLNK CD7 IGHA1 FAM92B RPL32 CD7 SLC17A9 TLR2
44 DYNLL1 TIFA EPS8L3 SLAMF7 MARCKSL1 RPS29 RPL22 MYBL1 NXN LGALS4 TMEM147 GIMAP7 RNF139 CDH11 DLC1 HLA-C DUSP5 CYBA CD19 RNF213 SLC38A2 LRRC25
45 MYADM HSPH1 ST14 SDC1 LY86 GIMAP4 RPL37 CEP55 CAV2 PTPRF DNAJC1 LTB HLA-DQB1 GREM1 PTGS2 CD3E FAM214A ITM2C RPL9 HLA-C CDKN1A AQP9
46 PRF1 LEPROTL1 VIL1 ANKRD28 SYPL1 RPL10 FAU HIST1H1B MYLK TMEM54 XBP1 RGS10 AL121944.1 FN1 MITF PARP8 KCNK6 IGHGP PARP15 TMSB4X JCHAIN C15orf48
47 H3F3B FYN SPINK1 LY96 IGLC5 RPS8 RPL21 CENPN FBLN1 IGFBP2 CHID1 CD247 RALGPS2 LUM TYROBP PTGDR EDEM1 IGHG3 RPL19 ITGB2 AC106028.4 S100A8
48 KLRD1 DNAJB1 LCN2 BHLHE41 CD79A SARAF RPL9 CDC20 SERPINH1 CD24 PPIB PTPRC RPS27 ISLR LTC4S GLIPR2 MAPKAPK2 CD38 LYL1 PSMB9 FBXW7 KYNU
49 CLEC2B ANKRD12 PCLO SERPINI1 TLR10 RPS18 RPS27 KNL1 LAMB1 RNF43 PDIA6 HLA-A RPL9 CXCL1 RENBP AOAH EIF2AK3 AC104699.1 CYBB CD247 IGHGP S100A12
50 HSPA8 FYB1 TPM1 CPEB4 MME RPL21 RPS27A DSCC1 HTRA1 CGN NANS RORA DNAJA1 COL3A1 FCER1G MATK HIPK2 IGHG1 CD72 TXNIP GAS6 FCGR3A
51 HLA-A UBE2B CDC42EP5 CHST2 SYK RPS21 STX7 UBE2T PMP22 KRT19 SEC61G RPLP1 SNX2 PDPN LPCAT2 KLRG1 CYBA RABAC1 RPS5 IKZF3 RRBP1 C3AR1
52 APOBEC3G CD28 OLFM4 RRBP1 DAAM1 PDE3B RPS14 NUF2 NID1 LCN15 SRPRA CD28 ID3 FAM20C IL18R1 TRG-AS1 BTG2 PECAM1 RPL13A MYL12B KCNN3 EPB41L3
53 ITGA1 TBC1D4 BICDL2 CLPTM1L TMED8 TRBC2 RPL39 NUSAP1 MXRA8 MISP SPATS2 OXNAD1 SERTAD1 WISP1 HHIP-AS1 HOPX IGHV4-59 CPEB4 RPL10A EMB PPP1R15A PLA2G7
54 FYN TPT1 PTPRF IGKC HLA-DQA1 RPS20 RPS6 CLSPN TFPI CEACAM6 PNOC CORO1B HSP90AB1 COL11A1 CD9 RNF213 IGHV3-30 HIST1H1C RPLP2 TRDC AC007952.4 MPEG1
55 LINC02446 H3F3B UGT2A3 FNDC3B ASB13 NACA RPL5 DLGAP5 DPYSL3 CYP2B6 OSTC SKAP1 H3F3B SERPINF1 CAPG TRBC2 NEAT1 GAS6 RPS8 CELF2 JUND SLC11A1
56 TRBC2 TRBC2 C6orf222 KRTCAP2 AC023590.1 KLF2 RPS11 STMN1 SDC2 TSPAN1 SLC35B1 LINC01934 HLA-DOB COL4A1 RAB32 PPP2R2B FBXW7 TMED10 RPL34 IGHG4 GAB1 NLRP3
57 PIK3R1 ARID5B SLC12A2 SPCS2 LYPLAL1 RPL12 RPL13A HIST1H3G BICC1 SCD HSPA5 TMSB4X SRSF3 IGFBP4 NBEA TMSB4X SLC38A2 RPN2 RPL18A PSME1 IER3 P2RY13
58 LYAR AC026979.2 TBX3 GADD45A AICDA RPLP2 POU2F2 TCL1A PLAC9 CFTR PDXK TRBC1 EEF1B2 COL16A1 BEX4 LCK SEL1L3 TMEM59 LTB ITM2C EGR1 PLAUR
59 EIF1 CD3E SELENBP1 IGHV1-69 HLA-DMA CD28 RPL10A MKI67 TPBG HNF4A SERP1 TMEM173 CD40 ADAMTS2 ADGRE2 TRAC RPN1 SEC61B RPS11 TNFRSF18 HSPA1A MS4A4A
60 ZFP36L2 CD3D PKP3 SOCS3 SCIMP RPL31 RPL29 KIF23 C1S SEMA3C PDIA4 ALOX5AP RPS20 CNN3 GLUL A2M-AS1 TRIB1 PDIA6 RPS18 SEC61A1 SIRPA
61 MATK DDX5 USH1C UBC SPRED2 RPSA RPL12 KIF4A AXL SH3BGRL2 SSR4 SH3BGRL3 RPS11 SULF1 ACSL4 CLIC3 RPS6KB2 TXNDC11 TXNIP SEL1L CXCL16
62 COTL1 IRF1 CAMK2N1 ITM2C SNX22 TPT1 RPS3 BCL7A LOX FXYD3 FCRL5 ICA1 KLF2 AEBP1 CSF2RB PLA2G16 SLAMF7 TMED9 HLA-DQA2 PPP1R15B FCGR1A
63 BRD2 MAF CEL NEAT1 CR2 RPS23 RPL14 CENPK EMILIN1 RNF128 LMAN2 RBPJ SCIMP LINC01705 CSF1 PTPRC ST6GAL1 SPCS1 AFF3 DENND5B FGR
64 PTPRC HSP90AB1 SLC44A4 CREB3L2 AC026904.2 TMEM123 CD52 DTX1 COL12A1 AGR2 UBE2J1 AC004585.1 ARL4D IFITM3 TDRD3 ABI3 ATF4 LAX1 TMEM154 RAB30 SLC7A7
65 SH3BGRL3 TGIF1 CDH17 TXNDC11 ZCCHC7 RPL13A RPL13 ORC6 TWIST1 KRTCAP3 CLPTM1L TIGIT RPL21 FBLN2 PAQR5 IL2RB TP53INP1 HSPA13 FCRLA AL360012.1 RAB31
66 HLA-C IL2RA FERMT1 IGHV6-1 CD37 PFDN5 PLAC8 CENPH TSPAN9 PPP1R14D BEX5 FYN SESN3 GAS1 ADRB2 CORO1A ANKRD36C IGKJ3 RPS3A PDK1 MS4A7
67 TIGIT CD69 LAMB3 CRELD2 KLHL6 RPL10A IGHD HMMR RBPMS CCND1 ARF4 BCL2 RPL18 TIMP3 AREG PYHIN1 PTP4A3 KRTCAP2 SCIMP IGKV3-20 ITGAX
68 UBB REL MOGAT3 RAB30 MAP4K4 FYB1 FCMR HJURP NR2F2 PKP2 UBA5 GZMM IER5 CHI3L1 MYB CD247 AKAP9 DNAJC1 HHEX SDF2L1 NFAM1
69 LYST CCR7 MYO6 FNDC3A LYN EEF1B2 RPL36 CDC45 BGN PPP1R1B SRM CLEC2D RPS5 CD248 C1orf162 GAB3 HIST1H1C SRM BCL11A CHST2 LILRB4
70 TUBB4B SC5D SPIRE2 TMEM59 MEF2C SESN3 UBA52 SERPINA9 EDNRA USH1C PLPP5 CD52 OSBPL10 CXCL3 CPPED1 PSMB9 FNDC3A TRAM2 HLA-DOB IGHG1 VCAN
71 CEMIP2 ZC3HAV1 VEGFA HIST1H2BJ HMCES RPLP1 RPL23 POLQ WWTR1 SLC39A5 IGKJ5 BCL11B VPREB3 HTRA1 RGS13 TIGIT SQSTM1 TRAM1 RPL23A ANKRD37 CFP
72 H2AFZ PDE4D LGALS3BP TRAM1 LPP TOMM7 RPL23A FANCI TUSC3 EPS8 KDELR2 ZAP70 PHACTR1 GPC1 KIAA1549 CLIC1 GOLGB1 POU2AF1 RPS27A IGKC THBD
73 ZC3HAV1 ZBTB1 LRP1 RPN2 TMEM131L RPL24 RPS15A CENPM THY1 KRT8 TMEM258 GNG4 YME1L1 PDLIM3 COL18A1 SLF1 IGKV3-20 MANEA EEF1B2 FCRL5 PILRA
74 DDX3X ELF1 GGT6 IGHGP BFSP2 RPL22 RPS16 HIST1H2AM GPC6 HOXA9 PIM2 SH2D2A RPL34 SNAI2 SMIM3 LCP1 IGHV3-23 HIST1H2BG RPL18 FOS RNF130
75 PARP8 PTMA ARHGEF38 BRSK1 AL512631.1 RPL18 RPL8 CENPW FKBP9 MAP7 TMED2 SRGN IER2 ADAMTS4 SH2B3 ITGB2 GLA KDELR1 RPS13 ADA2 KCTD12
76 LAG3 PDCD4 FZD5 IGKJ3 RFTN1 RPL39 RPS7 RGS13 NOTCH3 PKP3 IFNAR2 RAC2 LYL1 STEAP1 LRMDA ITGB7 JUN TMEM208 RPL21 SIL1 CYBB
77 TMSB4X RPLP1 CDH1 KDELR1 GPR18 RPS9 RPL10 MELK ADAMTS1 TRABD2A LY96 FXYD5 TFEB ID4 P2RY14 XCL2 IGLC6 SLAMF7 RPL12 CITED2 SECTM1
78 ATP1B3 CYTIP PRSS8 TP53INP1 POU2AF1 RPS25 RPL18A DEPDC1B FOXF1 ATP10B TRAM1 ICOS RPL37 EGFL6 TMEM273 MIAT H1FX PPIB RPSA TXNDC11 LILRA1
79 RPS29 SOD1 IGF2BP2 BCL2L11 HLA-DRA RPL29 RPL7 CHEK1 PLOD2 PHGR1 DAD1 PASK ZFAS1 COL15A1 BTK LYAR IGHM PTP4A3 RPL37 TP53INP1 DMXL2
80 HLA-E PTGER4 ATP9A ST6GAL1 PLEKHF2 BCL11B TOMM7 BRCA1 NUPR1 ELF3 SELENOK PBXIP1 EBF1 WNT5A TNFRSF9 RAC2 SIL1 MEF2C ZNF165 ITGAM
81 RPS27 CALM1 MYO7B DNAAF1 CD72 RPS2 RPLP1 CDCA2 TMEM47 B3GNT3 TMBIM6 SOD1 RUBCNL MT1E ACOT7 CCL3 DERL1 RPS29 LMNA HRH2
82 CALM1 STAM ABCC3 HSPA5 SYBU RPL18A RPL3 CKS1B MMP2 GPRC5A PREB SARAF FAU PRRX1 HS3ST1 CD52 NANS CHI3L2 CEP128 PTAFR
83 REL HSPE1 CTTNBP2 DERL1 PHF6 CD3G NACA HMGN2 TMEM158 PERP HYOU1 PFN1 FCMR SERPING1 LAPTM4A RGL4 ISG20 RPL30 THEMIS2 FGL2
84 ZBTB1 FXYD5 SATB2 TMED10 CYB561A3 PBXIP1 RPL6 ATAD5 CD248 EMP2 TMED9 ACTB POU2F2 TNC GALNT3 ATP5F1E DNAJC3 HLA-DOA ST6GAL1 GK
85 CNOT6L PDCL3 MACC1 DNAJC3 LAPTM5 NOP53 RPSA CDCA3 IGFBP5 ANXA3 SUB1 LCP2 UVRAG NOTCH3 ARMH1 ISG15 SELENOK FAU ICAM1 CD36
86 HSP90AA1 BCAS2 KCNQ1 PDK1 NCF1 RPL23 RPS10 HIST1H2BM TGFB1I1 NR2F1 SEL1L IL2RB RPL19 MRC2 P2RX1 PSME1 CREB3L2 RPL13 ZFP36 CLEC5A
87 OASL CSRNP1 FABP1 SRM FCRL1 UBA52 RPS4X WDR76 CTGF EFNA1 CPNE5 NDUFV2 CD22 GUCY1A1 NR4A3 RAB27A IGKC CCR6 HIPK2 RETN
88 RNF213 NR4A2 PCK1 EIF2AK3 DCK FXYD5 RPL41 HAUS8 SPARC CLDN4 RPN1 MYL12B RPSA CLMP DUSP10 ID2 UBE2J1 RPS21 PECAM1 HMOX1
89 YPEL5 SATB1 HNF4A SEC61B EAF2 RPL8 RPS25 SSBP2 C11orf96 TMEM176A EPRS DDIT4 RPS3A COL4A2 BACE2 HLA-F IGKJ4 RPS14 CYBA SPI1
90 UBC ZDBF2 TSPAN8 NR4A1 ACTG1 DGKA RPL31 E2F1 COL18A1 FGFRL1 EDEM2 CD84 RNASET2 RAB13 ALOX5 FYB1 RRBP1 HLA-DMB ATF4 TNFSF13B
91 HSP90AB1 GPBP1 CFTR HSPA13 HLA-DOA SLFN5 RPL38 BACH2 NTM TFF3 HAX1 APBB1IP RPL12 FKBP10 AC020571.1 COTL1 IGHV4-59 HLA-DMA PRDX4 GPR84
92 NAA50 CD3G IGFBP2 SPCS1 TCEA1 RPS15 KLF2 ASPM ISLR PLCB4 EBAG9 GIMAP4 RPLP2 GPC6 LACTB IL32 TMEM147 RPS2 HSH2D LGALS2
93 MYLIP RPS26 PPP1R9A IGHG1 PXK RPS28 RPL37A UHRF1 GUCY1A1 WFDC2 CHST2 RAB27A LAPTM5 PHLDA3 MBOAT7 MYL12B SEC62 RPL29 SOCS3 CFD
94 FYB1 GTF2B SOD3 RABAC1 LINC01215 TRBC1 RPS29 DMC1 PRRX2 CAMK2N1 KRTCAP2 TSHZ2 CD48 C3 ATP6V0A2 GNLY PRDM1 RPL27 NXF1 TFEC
95 LITAF PIK3IP1 AXIN2 FBXW7 UCP2 RPL27 RPL27A TMPO-AS1 SCARF2 SATB2 CISD2 MYL12A RPL23A PLAU RNF130 SH2D2A AKR1A1 RPS20 SEC24A ANPEP
96 BTG1 RPS3A ARL14 TAGAP POU2F2 RPL4 SMAP2 NCAPH FKBP10 CKMT1A IGLV5-37 CELF2 RPS27A HAS2 EPB41L1 TNIP3 TMEM258 RPS28 PRDM1 SLC15A3
97 FOSL2 RNF125 SH3D19 SEC61A1 ACY3 AC004585.1 COMMD6 MAD2L1 COL6A1 CLRN3 ALDH1L2 SNX6 UBE2S S100A13 ARHGAP18 THEMIS CHST2 RPS15 ERO1B G0S2
98 PDCD4 PTPRC MAP7 DNAJC1 PARP1 RPL23A RPS9 SMC2 COL8A1 TSPAN6 RPL36AL ARHGDIB RPL30 FERMT2 TIAM2 CHST12 SEL1L3 SP110 AC020916.1 LILRB3
99 RNF19A P2RY10 KIF16B HIST1H1C SMARCB1 EPB41 RPS26 FBXO43 RUNX1T1 NHSL1 ISG20 TBC1D4 RPL32 MYL9 GNA15 ITGAL BTG2 CR2 SLC38A10 LPCAT2
100 DDX5 LINC00513 ZNF703 BTG2 CD53 ETS1 SP110 CKAP2L COPZ2 SLC44A4 CCNC ETS1 TMEM156 FAP LEO1 CD99 CNPY2 RPS9 TBC1D9 BCL2A1

separation of epithelial, stromal and immune cells

Cell split