knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p021n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p021n"
## 
## $loom_file
## [1] "_data/velocyto/p021n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 4184 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2191 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 AQP8 ITLN1 SLC26A3 FABP1 LEFTY1 CREM OTOP2 MZB1 CA7 TBX10 SCGN MS4A1 MAFB HPGDS MS4A1 GIMAP7 CA1 PLCE1 MAFB OTOP2 RARRES2 AQP8
2 C11orf86 CLCA1 SLC26A2 PHGR1 RARRES2 ZNF331 DMBT1 DERL3 SPIB RAB3B SPARCL1 VPREB3 HEXIM1 BMX BANK1 CD3G CA2 NXPE4 EPPK1 BEST4 MYB CLCA4
3 CLCA4 REP15 SELENBP1 TMEM54 IGFBP2 CXCR4 BEST4 TNFRSF17 DMBT1 TPSG1 INSM1 TNFRSF13C RASD1 TRPM5 VPREB3 CD3E HEXIM1 NXPE1 SOX4 PCSK1N NOTCH1 SELENOP
4 SELENOP MUC2 CA1 KRT19 IMPDH2 RGCC CA7 IGKJ5 BEST4 FER1L6 SCG5 BANK1 IER5L HCK CD83 CD2 SELENBP1 XIST HEXIM1 CA7 PLCB4 MDK
5 TMIGD1 RETNLB TRPM6 SLC51B CDCA7 ICOS ADCY5 FCRL5 UNC5C GPR153 A2M CD79B HES1 OGDHL HLA-DQA1 CD3D PHGR1 HIST1H2BG MYOM1 MKI67 GUCA2B
6 GUCA2B KLK1 MS4A12 CEACAM7 C1QBP CD3D MEIS1 IGHA2 NOTCH2 IL3RA CHGB PAX5 SOX4 GNG13 HLA-DQB1 CD8A PIGR NRARP OTOP3 CFTR SLC26A3
7 HPGD WFDC2 FABP1 SLC26A3 GPX2 IL7R CDK18 CCR10 PROX1 SYTL5 VGF HLA-DQA1 HIST1H2BG SH2D7 LY86 LINC01871 RASD1 RMRP DMBT1 C21orf58 SLC9A3
8 TMEM37 SPINK1 ABCA5 LGALS3 PPP1R1B SRGN SPIB SPAG4 NBPF14 TFF1 VSIG4 TCL1A POU3F1 SH2D6 PAX5 NKG7 KRT19 IER3 CA4 ATP2C2 TMIGD1
9 MDK ST6GALNAC1 ADIRF KRT20 APEX1 AC058791.1 CTSE AC104024.1 CEACAM3 SYT7 CRYBA2 CD22 CSKMT B4GALNT4 HLA-DRA CCL5 HES1 POU3F1 MT1H PPP1R1B GUCA2A
10 TRIM31 FCGBP CD24 PLAC8 KCNE3 GPR65 NEURL1 GNG7 CPA6 MLPH CSF1R HLA-DRA IER3 PSTPIP2 CD79A HCST SOX4 AL137077.2 PRKG2 MLEC PLAC8
11 GUCA2A TFF3 S100A6 TK1 CD3G MSLN SLAMF7 HEPACAM2 MUC2 SCG3 CD79A NRARP COL27A1 HLA-DPA1 TRGC2 EGR1 OVOL1 ADCY5 LCN2 ANPEP
12 SLC9A3 BEST2 CDKN2B-AS1 EPHB4 CD2 PCSK1N LINC02362 ADCY5 REP15 SCG2 LY86 SELENBP1 PTGS1 CXCR4 CD7 IER3 HES1 SLC2A5 TXN ABCB1
13 SULT1A2 ANO7 KRT8 MRPL11 TRAC HEPACAM2 JSRP1 HES4 FAM177B CPVL CR2 AC023157.3 AZGP1 BASP1 SLFN5 MALAT1 AC087623.3 SPIB NUPR1 CEACAM7
14 PLAC8 SPINK4 MT1M ALDH7A1 CD3E HES4 POU2AF1 MEIS1 CAPN9 CD163 BLK AL137077.2 DKK3 TCF4 TRAC HIST1H4C LINC01970 FRMD1 GPX2 TRPM6
15 SLC26A3 SPDEF FXYD3 ADH1C RGS1 FRMD1 IGLV3-1 CCND1 CDC42EP3 FEV HLA-DPB1 LINC01970 HTR3E HLA-DPB1 GZMA SLC26A2 EGR1 MT1F KNOP1 PRAP1
16 SECTM1 RAP1GAP ETHE1 AQP1 SAMSN1 NOTCH2 MEI1 C2orf72 SERPINA1 MS4A6A FCER2 EGR1 ALOX5 CR1 GIMAP4 FABP1 CEBPB MT1G PRAC1 MS4A12
17 SLC51B SERPINA1 SLC26A2 GMNN NR4A3 UNC5C IRF4 TMSB10 KLK1 RTN1 TLR10 AL355075.4 POU2F3 CREM CD247 RHOB RDH10 MT2A MLXIP MUC12
18 ISG15 TPSG1 ADIRF RPLP0 PTPRC NBPF14 ICAM2 ADRA2A MB SPARC IGHD CBX4 IL17RB DAPP1 HOPX IER5L HIST1H2AH SCIN ATAD5 SLC51B
19 IFI27 WNK4 GUCA2A NUPR1 KLRB1 CA4 FKBP11 GNPTAB ZG16 CLEC10A FCRLA CA1 DPYSL3 BCL2A1 KLRD1 HIST1H2BH CDKN1C MSLN UGT2A3 SULT1A2
20 PRAP1 ZG16 SFN RPS24 FYN CEACAM3 TNFRSF4 SIPA1L2 SPDEF FPR3 BASP1 CA2 LRMP HLA-DMB GZMM CHCHD10 Z93241.1 CKB BRCA2 SLC17A4
21 CEACAM7 ATOH1 IFI27 GGH AC016831.7 PROX1 JCHAIN NEURL1 MINPP1 ETV1 HLA-DOA ADIRF PAK3 LY9 TRBC2 IER2 RASD1 MT1M HSPD1 IFI27
22 CA4 MLPH SMIM24 ARSE TRBC1 SCRN1 TNFRSF18 C1orf21 EREG CALD1 POU2F2 PIGR CD300LF LINC01781 PTPRC ADIRF AC091271.1 HRCT1 UGT2B17 CD177
23 CDA DLL1 LGALS4 PDSS1 SLC2A3 HRCT1 MANEA DMXL2 S100P UCN3 CD19 SOCS1 SERPINA11 SLC2A3 LCP1 PPP1R15A HSPA2 GUCA2A HMGCS2 CDA
24 RFK AGR2 COX5B RPL37A TSC22D3 TTC39B CD27 QSOX1 GSN NNMT AFF3 PCK1 AFAP1L2 ARHGAP24 PLEKHF1 NDUFB7 PCK1 DOCK4 PEBP1 EMP1
25 CLDN23 TCIM CKB SNRPF PTPN22 NPY1R CD79A ABCC3 NPDC1 CLEC7A HLA-DPA1 HIST1H4C RGS13 CXCR5 S100A4 AL355075.4 CSKMT HES4 CENPF HPGD
26 TSPAN1 FRYL SELENBP1 RPL8 HCST MYOM1 AMPD1 CDC42BPA FAXDC2 F13A1 CD40 IER5 MATK RIPOR2 LCK SOCS1 AC087239.1 SDCBP2 CYC1 TRIM31
27 HLA-A IGFBP2 S100A10 KCNN4 TNFAIP3 MT1H LY96 DIAPH2 BCAS1 MAP1B HLA-DMB CITED2 AVIL LINC01857 CLEC2B ID1 KLLN C2orf54 RPL37A HIST1H1C
28 PKIB SLC12A2 TMIGD1 TXN CD69 MT1G AC104699.1 ADD3 BEST2 NRP1 CYBB POLR2A ADGRG6 LINC01215 TRG-AS1 KRT8 ID4 MT1X RPS24 C11orf86
29 SDCBP2 SLC4A7 LINC01133 RPS6 CD53 LGALS9B A1BG KLF5 RAB27A MAMDC2 CD72 C6orf120 PLEKHB1 RASGRP2 CST7 LGALS4 IER5L MT1E RPS18 LEAP2
30 FTH1 MUC4 SMIM22 EPHB2 SPOCK2 VIPR1 IGKV4-1 VMP1 FCGBP CFP LINC02397 CHCHD10 HTR3C CD79B TMIGD2 C6orf62 NDUFV1 MEIS1 PRDX5 ISG15
31 RHOC RNASE1 MYL6 DNPH1 ITM2A NSD2 CXorf21 MCF2L MNDA LTB PPP1R10 TAS1R3 HLA-DRB5 GPR174 PPP1R10 CITED2 CEACAM7 UQCRH TSPAN1
32 EMP1 NR4A1 UQCRQ EBPL TRBC2 TMSB10 ICAM4 GPRIN2 MS4A4A POU2AF1 EPPK1 DGKI ZNF331 CD52 PHLDA2 SELENBP1 FXYD3 TOP2A MEP1A
33 TRPM6 KLF4 COX7A2 POLD2 CD52 GNPTAB CHST15 MFSD4A C1QC LINC01857 CD24 NRCAM IGHD CXCR6 MAFB AL118516.1 SRI NXPE4 MISP
34 MS4A12 MCF2L C1QTNF12 RPS2 SLA CEACAM6 CSF2RB TFF3 MPEG1 FCRL1 Z93241.1 NCMAP GPR183 FYB1 KRT20 AL021453.1 TTC39B PIGR CLDN23
35 MISP XBP1 SIRT6 ALDH1B1 S100A4 CDC42BPA PIM2 B3GNT6 CD93 LYL1 IER2 PLCG2 TNFRSF13C GMFG GADD45B UGT2B17 CEACAM6 ATP5MC1 SDCBP2
36 HIST1H1C RPL36 MS4A12 TPX2 CD48 MT1F PRDX4 ANKRD36C C1QA LAT2 PMAIP1 IGSF21 EBF1 KLRB1 POLR2A HIST1H4C KRT20 AC103702.2 SFN
37 HLA-C CRACR2B PRDX6 RPS18 NR4A2 MT2A RASGRP3 SMIM6 GCG HLA-DMA GADD45B CORO2B BLK ARHGDIB NRARP HMGCS2 CDK18 SYNE2 MIER3
38 ANPEP CREB3L1 AMN MLEC LAPTM5 A1CF TPST2 DPYSL2 IGFBP7 TCF4 KRT19 CGNL1 CR2 ABI3 DSP IER5 CEACAM1 VIM LMO7
39 CFDP1 ERN2 TRPM6 RPL10A RORA GUCY2C ANKRD28 ITLN1 CPE MARCH1 ELOB GRK5 FCRL1 IL2RB ID4 PMAIP1 GUCA2B HLA-A
40 PRSS3 RAB27A MT2A BZW2 CD7 PRKG1 DUSP5 SCGB2A1 NOVA1 HLA-DRB5 GADD45G FRY RASGEF1B CORO1A CD24 AL031777.3 HLA-DRB1 PKIB
41 RARRES3 FAM3D PKIB LAPTM4B DUSP2 SCIN IGLL5 TPM1 KIF5C CHI3L2 HSPA1A GRASP CD37 LRRN3 HSPA1B CBX4 S100A10 CA4
42 SERINC2 GALNT5 TP53I3 LDHB PDCD1 CKB TSC22D3 WNK4 GNG11 HLA-DQB1 HSPA1B KLK11 HLA-DMA IKZF3 POU3F1 PPP1R10 AOC1 CCDC68
43 PMEPA1 ATP2C2 PPDPF MRPS2 CCL5 SLC2A5 LGALS1 FOXA3 TGFBI EBF1 CDKN1C C11orf53 LAPTM5 CD160 NUFIP2 SOCS1 CARD16 LAMB3
44 PTPRR HPCAL1 CA2 RPL29 BCL11B GUCA2A TENT5C QSOX1 MFGE8 HLA-DOB CEBPB KIT GRASP THEMIS IER5 AC023157.3 NEURL1 IFI6
45 HSD17B2 HEPACAM2 PRSS3 ESD ARHGDIB SI EAF2 KAZALD1 TPH1 IGHM ATP5F1D TREH NR4A3 LCP2 S100A6 PIGR LYPD8 CEACAM1
46 MUC12 MYADM CA1 RPL12 AC044849.1 MT1X IGKV3-20 FRMD3 ITGAM SERPINA9 ID4 DCLK2 SH3BP5 GPR171 MT1G CA1 SELENOW SECTM1
47 ENTPD8 KIAA1324 SRI RPL31 ARL4C HR RAB30 ENTPD8 COL6A1 CD37 CYCS FYB1 FAM30A ARL4C C10orf99 SLC26A2 S100A6 ENTPD8
48 ABCB1 KRT18 TST FBL PRMT9 ADRA2A THEMIS2 DHRS9 C1QB CD74 LGALS4 SLCO4A1-AS1 CD74 CTSW COX5B TLCD2 LUZP2 SLC40A1
49 C2orf88 SYTL2 DEFB1 RPS8 ANXA1 MT1M HSPA13 SYTL2 CAVIN3 SELL KLLN ANXA13 AFF3 ITGA1 KRT18 TXN DSC2 C1QTNF12
50 CDKN2B-AS1 PRKAG2 ATP5MD RPL35 STAT4 ID1 GLA FGFR2 CACNA1A CD52 HIST1H2AH CLDN1 MEF2C APBB1IP TPI1 UQCRC1 SCRN1 TMEM37
51 CDHR5 CDC42EP5 SDCBP2 RPL18A FYB1 MT1E BST2 RASEF FHL1 NCF1 RGS16 KCNQ4 CD22 RAC2 CLDN4 HBA2 TMSB10 C1orf115
52 GSN ITPR2 BSG CLDN15 CLEC2D TMEM176B VIM SPATS2L AIF1 BCAS4 RHOB PIK3CG SMAP2 EVL AC023157.3 HBB ID1 DST
53 PI3 TPM1 UQCR11 RPL36 LCK LGALS9C IGHA1 CREB3L1 SLC38A11 CD180 AC087239.1 CCSER1 IRF8 GZMB SFN TMEM176B COL17A1
54 C3orf85 NUPR1 CDHR5 BEX3 RGS2 SAMHD1 KLHL6 CAPN8 TIMP3 CTSH TXN ACSL4 RILPL2 FYN CKB SLC20A1 PTPRR
55 LINC01133 GOLGB1 C2orf88 RPS4X CD4 C1orf21 TXNDC15 RFLNA TUBA1A LINC01781 SOCS3 HIP1R NFKBID LAPTM5 NEAT1 KRT8 PRSS3
56 MYL12B KCNQ1OT1 SLC22A18 RPL22 CD28 CEACAM1 PRDM1 ATF3 SCT LAPTM5 AC011498.1 SPTLC2 RHOH CD48 AC087239.1 LGALS3 GPRC5A
57 FCGRT ETS2 CLTB RPL36A CYTIP MALT1 MIR29B2CHG FAM3D CAV1 LMO2 RND3 PTPN18 NR4A2 CD96 CITED2 NEAT1 GSN
58 SMPDL3A TCEA3 TSPAN1 DUT LCP1 ABCC3 GYPC SH3PXD2A PLAC9 CORO1A ATP5MC3 LIPG LTB PRF1 AMD1 ITM2C CDKN2B-AS1
59 CCDC152 C12orf57 PRR15 RPS21 RNF139 SLK PDK1 SMIM5 TNFAIP2 SPI1 UGT2B17 PBXIP1 SP110 ALOX5AP AC020911.2 A1CF RFK
60 TMEM54 GDF15 MRPL41 RPS28 LINC00513 PDK1 SEC11C CLDN8 CHGA SP140 ADM TPM2 LYL1 CD53 RND3 SAMD9L SMIM31
61 EPCAM FOSB TSPAN8 RPL39 CCL4 TDP2 IGHG1 REG4 CCDC88A CXCR4 C6orf62 ZFHX3 CD48 RASGRP1 HIST1H2AH DST CDHR5
62 LEAP2 JUN BLOC1S1 RPL32 JAML HSPB1 TIMP1 TM4SF5 FILIP1 IRF8 BTG1 CAPN12 CD52 SKAP1 SLC26A3 TMEM176A FTH1
63 PPP1R14D RPS24 MT1E PRDX5 TIGIT HSD17B11 QPCT TCIM SCPEP1 LCP1 HIST1H2AG MAP7 TMEM243 CD69 EPPK1 TDP2 PTPRH
64 CRYBG2 RPS18 COX7B RPL13 YPEL5 IMPA1 HERPUD1 TMEM61 TYROBP ARHGDIB ID1 RASSF6 CD53 RGS10 KLF3 EEF2K PRSS8
65 SLC17A4 RPS15 GIPC1 MRPS35 LTB DMXL2 BASP1 SCNN1A KCTD12 RASSF2 HSPA2 DEPDC7 SELL CYTIP LGALS3 GPA33 SAMD9
66 CTSA RPS11 CEACAM1 RPL7A TNFRSF1B ECE1 SSR4 TSPAN1 CAVIN1 HLA-DQA2 PHGR1 ITPR2 RGS2 LSP1 HIST1H3C PDLIM1 RARRES3
67 BTNL8 NEDD4L FTH1 RPS3A CD96 KRT20 SDF2L1 SLC16A9 ADAP2 SWAP70 HIST1H2BI CREG1 HLA-DRB1 PPP1R18 ELOB NBPF14 PMEPA1
68 MEP1A BTG2 MUC12 RPS14 ACAP1 GOLM1 EMP3 ACOT7 PAM RCSD1 RDH10 ATP2A3 LINC00513 GIMAP6 ATP5F1D CDHR2 APPL2
69 SMIM22 RPL27A CSTB RUVBL2 SARAF AOC1 UBE2J1 MLLT3 PYY EVI2B GPX2 MYO1B DUSP2 ARHGAP9 UQCRQ TP53INP1 RHOC
70 GPRC5A NANS IGSF9 RPS12 RAC2 PTK6 AQP3 MGLL EGR3 SNX22 AMD1 ALOX5AP REL TIGIT CYCS RNF186 PNPLA2
71 DUOX2 RPL12 JPT1 MRPL45 FXYD5 PDE3B IGKV1-5 TSPAN13 MS4A8 SCIMP COX5B IL13RA1 IGHM SCML4 S100A14 NOTCH2 SERINC2
72 LINC01559 RPL13 ANPEP RPL37 NR3C1 LYPD8 SELENOM CLCA1 IGFBP3 ORAI2 PPP1R15A IGSF3 SLBP SRGN HSP90AA1 CDHR5 SHROOM1
73 HKDC1 RPL38 C15orf48 RPS23 TUBA1A PLCE1 CCDC69 HID1 RPS11 GRAP TMSB10 HOTAIRM1 TNF MSN HIST1H2BF MYLK ABCG2
74 CDHR2 SCNN1A CLDN3 RPL3 CKLF SELENOW AC009404.1 GDPD3 C11orf96 CD48 NDUFB7 LYZ CD19 CKLF HIST1H2BG VIPR1 CDHR2
75 TIMP2 RPS12 MGST3 RPL11 RUNX3 CDH17 CD38 VSIG2 PMP22 BTK ELF3 TRHDE PPM1K TNFSF14 CEBPB CTSE HLA-C
76 CAMK2N1 ODC1 GNG5 TRABD2A LAT ANK3 ADA2 GALNT5 RNASE6 HLA-DRB1 SRSF7 IFI6 PDE4B VIM HIST3H2A CAMK2N1 C3orf85
77 CLDN3 RRBP1 MPST RPL7 CD5 CCND1 PDE4B IRF6 RPL12 GNG7 MARCKSL1 MARCKSL1 SNHG15 EMB ARL14 BSG HHLA2
78 PLIN3 RPL8 HINT1 RPL24 AC020571.1 CARD16 CD74 NEDD9 MRC1 GPSM3 BTG2 LIMCH1 TSC22D3 DOK2 PLK2 HSD17B2 PLS1
79 SLC15A1 SNORC ITPKA RPL23 SKAP1 SLC20A1 RGCC IFI27 BEX3 AC004687.1 DNAJA4 CD14 CYSLTR1 APOBEC3G FLNB MYO15B ASS1
80 LINC02023 GMDS EFHD2 PYCR1 LINC01871 ITM2C XBP1 ANO7 GNAS RGS19 TPI1 VAV1 CYBB ITGAL HSPA1A PHGR1 CFDP1
81 SFN RPL37A COX6C IFRD2 APBB1IP SAMD9L CREB3L2 ERI3 RPS2 RHOH PYCARD BIK SWAP70 HCLS1 TUBB4B FTH1 CAMK2N1
82 S100A10 RPL31 C10orf99 EEF1B2 CD37 CES3 SPCS3 KCNK1 RPS8 ADAM28 ZFP36L2 PTPRJ SNX2 XCL2 SNAI1 EPCAM SPINT1
83 TNFSF10 RASD1 COX17 RPL13A PDE4D GPA33 MANF DST CRTAP RASGRP2 SLC26A2 FES AIM2 PIP4K2A CES2 HSD17B11 SFXN1
84 CTSZ IER3 NDUFA1 CENPF GZMA MYO1B CHPF CD63 SNHG19 SMAP2 NUFIP2 ABHD2 BCAS2 TRBC1 MIR22HG MUC13 ABCA5
85 PRSS8 SH3PXD2A DHRS11 RPLP2 HOPX PLXNA2 SPATS2 CD177 RPS24 CD53 ATP5MC1 SELENOM LYN CLEC2D CLDN3 IMPA1 CTSA
86 VAMP8 PRDX5 PLEKHG6 RPL5 TAGAP S100A10 MEF2C SMIM14 YBX1 PTPRC DSP AL357033.1 POU2F2 CD8B CDHR5 CHMP4B TRANK1
87 C1QTNF12 RPL37 CHCHD10 GLIPR2 PDE4A TMEM176A IGHGP FBXO32 HLA-DQB1 CR1 FABP1 KRT18 TLR10 BCL11B CSKMT LGALS9C BHLHE41
88 LGALS3BP RPL18A RHOC RPS16 CD247 SLPI ERN1 PARM1 HLA-DMB MEF2C MED29 SMTN ITPR1 SELPLG BTG1 NEURL1B ERBIN
89 CLTB RPL13A MYL12B ATP5MC1 GMFG CDHR2 CRELD2 SELENOK RPL13 FCMR HIST1H2BH FGFR4 CHI3L2 CMTM3 BSG CIB1 LINC02023
90 HHLA2 RPS8 NDUFB2 RPS29 DNAJA1 PPP2R1A SEL1L PTPRN2 CD4 SASH3 ATP5ME EIF1B YPEL5 ANXA1 MT2A MXI1 LIPH
91 COL17A1 RPL14 ANXA2 TIMM9 GATA3 MUC13 SSR3 HEPACAM2 RPL35 CSK HOMER1 CHD6 KDM6B ANXA2R ELF3 FABP1 MTRNR2L12
92 SLC40A1 URAD HIST1H2BH RPS5 LSP1 LGALS9 SRM AREG RPL10A IKZF3 ID2 TUBA1A FCMR FASLG ZFP36L2 ACSF2 CTSZ
93 ABCG2 RPL35 ATP5ME TOP2A HSPA8 RNF186 CYBA LGALS9C QPCT SH3BP5 AL135925.1 SPIB FCER2 GNAI2 MT1E FLNB GIPC1
94 ATP1B3 AC020916.1 KRT18 MYB XCL2 AKAP9 TRAM2 TACC1 RPS4X WAS KCNQ1OT1 SNX9 TUBA1A ITM2A SERTAD1 ADRA2A RHOF
95 C1orf115 ANKRD36C OCIAD2 RPL35A CD6 TP53INP1 ZBP1 ATOH1 RPL14 CD83 ZBTB10 SKAP2 CKS2 ARHGAP30 CYBA PPARG NEAT1
96 ITM2C RPL18 ATP5F1D RPL27A IL2RB CHP2 RHOQ DDR1 RPL37A STK17A UQCRC1 SLC25A29 TMEM156 GNLY RSRP1 GSN S100A10
97 IFI6 RPS2 SLC25A5 RPL18 CST7 CLRN3 HSP90B1 SYTL4 RPL7A GRK3 ANKRD37 CMYA5 RAC2 PTPN22 HIST1H3H DDAH2 SLC6A8
98 CD177 ZBTB10 CES2 EPHB3 GZMM MGAT4B FAM30A PLA2G10 RPS6 TMEM154 C10orf99 JMY CD40 IL7R HSPA2 HEPACAM2 TNFSF10
99 APPL2 ITGA6 COX6B1 PAICS H2AFZ KRT8 SLFN11 TUBB2A BEX2 LSP1 CYBA LUC7L3 TMEM131L RASAL3 H2AFX NSD2 ARL14
100 CLDN4 BRD2 TXNDC17 PRDX3 EIF1 FLNB SPCS2 ARFGEF3 SLC25A6 TMEM131L HIST1H3A KIAA1324 CD69 EMP3 MT1X SLC17A4 C19orf33

separation of epithelial, stromal and immune cells

Cell split