knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p020t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p020t"
## 
## $loom_file
## [1] "_data/velocyto/p020t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 4287 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2224 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 CCL4 PERP CEACAM7 RECQL4 LTB CPVL TMEM63A PGGHG WFDC2 MUC4 CD2 TCF4 GZMB TRGC2 TNFRSF17 KLF2 TNFRSF4 CLDN4 DNAJB1 GZMA SAPCD2 FOSB
2 IFNG ANXA4 CA1 HOTTIP FOXP3 SPI1 ONECUT2 ITLN1 PRAC1 GNLY FLT3 CTSW IL7R DERL3 LTB TNFRSF18 HBA2 HSPA1A CCL5 TRAP1 NR4A2
3 NKG7 CEACAM6 SLC26A3 XRCC2 TNFRSF4 FPR1 SLC12A2 RETNLB NUPR1 HOPX WDFY4 GZMA MALAT1 IGLV3-1 CXCR4 CTLA4 CLDN3 DUSP1 LINC01871 HMGB3 JUNB
4 GNLY MAL2 MS4A12 PGGHG SLFN5 NCF2 DHCR24 PRAC1 OLFM4 TNFRSF18 MEF2C CD8A RPL3 POU2AF1 CCR7 ICOS KRT18 HSPA1B CXCR6 GGCT CREM
5 GZMA DSG2 TRPM6 FAT1 SPOCK2 FPR3 CEACAM6 NUPR1 SPINK1 TNFRSF4 BASP1 LINC01871 RPS27 IGKJ5 IL7R LINC01943 PHLDA2 IFNG CD8A MKI67 CD69
6 GZMB CD9 MEP1A MKI67 GIMAP7 OLR1 LYZ FMOD MUC12 CD4 MS4A1 GZMH CD160 CD79A TPT1 MAF PKP3 CACYBP NKG7 BRI3BP IL7R
7 NR4A2 EPCAM GUCA2A AL390719.2 CD4 CSF1R MROH6 REP15 FAM3D CXCL13 GRASP NKG7 CCL5 IGHA2 CREM DUSP4 HOXA11 CCL5 TMSB4X PITX1 TSC22D3
8 CLEC2B S100A16 SLC4A4 PKP3 IL2RA CD14 ANO9 CPE NXPE1 CXCR6 SPIB CCL5 RPS27A BMP6 LEF1 SPOCK2 NRARP FOS CD52 PKP3 DNAJA1
9 CCL5 IFI27 SULT1B1 MACC1 CD28 IGSF6 MACC1 ANO7 B3GNT7 CKLF SERPINF1 GNLY RPL34 GNG7 CD28 RGS1 IFI27 MRPL18 CD8B IFITM3 ZNF331
10 CTSW KRT8 CA2 C21orf58 PTPRC MS4A6A EIF3B MUC5B NXPE4 LINC01943 BANK1 CD52 RPS19 PNOC RPS27 CD4 HBA1 HSPH1 CD2 MLEC EIF1
11 TNFAIP3 KRT18 C2orf88 ONECUT2 TPT1 MNDA PGGHG SPINK4 PCK1 RBPJ TIMP3 KLRD1 RPL23A JCHAIN RPL11 CD28 SFN NKG7 GZMH LYZ CD160
12 GZMH CD24 TMIGD1 SOX4 AQP3 S100A8 KRT18 SPINK1 MT1G SPOCK2 CLEC4C PRF1 RPL32 CCR10 RGCC IL2RA IFITM3 ZNF683 PLEKHF1 DSG2 DUSP2
13 CD69 TSPAN8 CLDN8 IRAK1 IL7R LILRB2 VEGFA CLCA1 AC103702.2 PDCD1 AEBP1 LINC02446 CD8A IGHG4 JUND SRGN KRT8 FOSB CD3D ADAM15 JUND
14 DNAJA1 CENPV GLDN PGP CD2 S100A9 MLEC FAM3D PLCE1 HAVCR2 VPREB3 CXCR6 RPS3 MZB1 RPL34 FOXP3 GSTP1 PPP1R15A GZMB TGFBI BTG1
15 DUSP2 IFITM3 PARM1 KCNQ1OT1 TRBC2 SLC8A1 CDC42BPA FCGBP PLA2G2A CD3D CALCRL ZNF683 RPS14 IGHG3 DNAJB1 ARID5B S100A13 HSP90AA1 HCST AGR2 TNFAIP3
16 HSP90AB1 SMIM22 CDKN2B-AS1 ASPM RPL11 AIF1 CCND1 B3GNT6 LGALS2 FKBP5 CSF2RB HCST GIMAP7 IGHV4-34 RPL9 HSP90AB1 EGR1 RGS2 TRAC EIF3B MYADM
17 HSP90AA1 SYPL1 BTNL3 PPP1R16A RPS29 RAB31 PEAK1 KIAA1324 ST6GALNAC1 SH3BGRL3 NAV1 HLA-DRB1 RPS3A JSRP1 DNAJA1 DNAJA1 SMIM22 NEU1 GIMAP7 CENPW H3F3B
18 KLRD1 ATP1B1 GUCA2B TOP2A TRAC PLXDC2 AGR2 MUC2 MTRNR2L12 S100A4 LAMP3 IKZF3 TPT1 IGHA1 RPL19 BTG1 GDF15 JUN CD7 CCNB1 HSPH1
19 ZNF331 NCKAP1 CA4 RABL6 MAF CSTA EMP2 ST6GALNAC1 B3GALT5 PRDM1 LILRA4 ALOX5AP NKG7 SPINK2 RPS6 TIGIT ELOB CD8A ZNF683 IRAK1 HSP90AB1
20 PTPN22 VIL1 SDCBP2 ILF3 SELL CD300E H1F0 MUC4 ERN2 ANKRD35 TPSAB1 SH3BGRL3 RPL19 IGKV4-1 RPL3 TNFAIP3 ELF3 CLK1 ITGA1 KRT18 HSP90AA1
21 REL NR2F6 HHLA2 KNOP1 FCMR OSCAR SCD RAP1GAP SLC4A4 PFN1 RHEX CD7 RPL9 SPAG4 TSC22D3 PRDM1 TBX3 HSPA6 PTPRC EPCAM DNAJB1
22 RGS2 VSNL1 MUC12 CENPF LEF1 MRC1 FZD5 TCEA3 MTRNR2L8 GMFG TBC1D9 LINC02195 GIMAP4 IGHGP RPS12 TRAC SOX4 LINC02446 SH3BGRL3 PAICS SRGN
23 FOSB CDH17 PLAC8 RPL34 CYBB PIGR TPSG1 AK1 CCL4 TUBB2B CD2 RPS12 U62317.5 BTG1 HSP90AA1 MDK GZMA SLFN5 DHCR24 XCL2
24 LINC02446 LGALS4 FABP1 CD3E TYROBP IFITM3 KLK1 ELF3 ALOX5AP CD83 HLA-DPA1 RPLP1 IGHV1-18 RPL32 RGCC RABL6 GADD45B ALOX5AP EMP2 RPS27
25 CCL3 GSTP1 LRRC19 CD27 HCK KNOP1 NXPE4 FXYD3 MAF CLIC2 CD3D RPL11 FAM30A JUNB SAMSN1 CD320 JUND IKZF3 CENPF ANKRD37
26 SAMSN1 MACC1 VSIG2 RPS3A PLA2G7 USP7 NEDD4L PLCB4 LCK CCL19 APOBEC3G TMSB4X P2RX1 HSP90AA1 CD2 TMEM238 ID2 CTSW CD24 YPEL5
27 HSPH1 TXN CDKN2B RPS27 SMIM25 POLD2 DNAJC12 ABCC3 CD3E GNG11 FASLG RPL30 TCF4 RPS27A CACYBP HIST1H2BG ATF3 FYB1 ATP1B1 PNRC1
28 CD52 KRT19 PCK1 MAL MARCO KCNQ1 MT1G PIGR PSMB9 KRT1 ITGAE ITGAL IGHM RPS16 ZC3H12D FOXQ1 CTSW S100A4 FBL SELENOK
29 SRGN KRTCAP3 MT1M FXYD5 VCAN PDZD8 FABP2 ATP2C2 NCF4 SPARC RAC2 RPS6 FKBP11 RPS29 S100A4 PLEKHA4 DNAJA1 RAC2 KRT8 NR4A3
30 RGCC DSTN C10orf99 GIMAP4 MPEG1 DSG2 GALNT8 CA2 TMSB4X AKAP12 CKLF STK17B PIM2 RPS14 CD3D TFF3 DNAJA4 CD3G ASS1 GADD45B
31 JUNB RAB25 MYLK GMFG CLEC5A LMO4 ENTPD8 LEFTY1 SLC27A2 KIT TRAC CD48 IGKC SELL UBC TRPM4 CHORDC1 HLA-C SLC12A2 RGCC
32 UBC TSPAN13 CDHR5 TBC1D4 CD86 MYO6 SOD3 MAP2K6 RGS1 CCL17 HLA-DPB1 RPL10 MANEA RPS3A C16orf87 KRT19 HSPD1 STK17B DSP BTG2
33 HLA-DRB1 RAC1 B3GALT5 RPL19 CD93 ATP1B1 SERPINA1 TMEM54 RAC2 SWAP70 S100A4 RPL21 SERPINI1 EIF1 JUND S100A6 JUNB HLA-A EPRS UBE2S
34 YPEL5 LCN2 PKIB GPR155 C5AR1 MYO10 MLPH SELENBP1 SP140 COL4A1 COTL1 PTPRC SLAMF7 RPL30 CSF2 MISP TIFA ITGAE ARHGAP32 DDX5
35 CCL4L2 AGR2 SCNN1B RASGRP1 FCGR3A CD46 HEPACAM2 CKB TRBC1 CPA3 TMSB4X CD3D SELENOM CYTIP CREM PHGR1 ITGAE COTL1 TALDO1 CXCR4
36 HSPA1A CCND1 TSPAN1 RPS27A ADGRE2 PKP3 HOXB13 ATP8B1 ACTB PLD4 CD3G PTPN4 SSR4 RPL23 SMAP2 HBEGF NR4A1 ACTG1 GPAA1 KDM6B
37 SELENOK PDZK1IP1 EDN3 HLA-E IL1B CCNL2 MT1M ITM2C LINC01871 TYROBP CD74 RPS29 SEC11C ARID5B FYN AGR2 CLEC2B RARRES3 PIGR HSPE1
38 DUSP1 EMP2 ABCA5 MALAT1 FCER1G TMPRSS4 DLL1 HES1 TIGIT CBFA2T3 MIAT COMMD6 IGHG1 RPL13 CYTIP RPL35 DOK2 RPS29 CDC20 HSPA8
39 RGS1 S100A13 UGT2A3 RPL30 FCN1 PGP MUC12 GPX2 MYL12A SLC18A2 RARRES3 RPL13A FKBP2 RPL23A SLA HSPB1 CD69 CD3E IFI27 MALAT1
40 DNAJB1 PHLDA2 CHP2 RPL9 CLEC10A CLUH ANXA13 LGALS4 CD7 MS4A2 HLA-A HCST PRDX4 RPLP1 CD3E RPL8 TNFSF14 LAG3 GSTP1 CRTAM
41 CHORDC1 ANXA2 FXYD3 CD247 LST1 SPTBN1 VSIG2 CDC42EP5 MAL IL3RA HOPX LINC01871 HERPUD1 HSPA8 IL7R RPL36 TRBC1 CST7 ASPM NR4A1
42 DUSP4 S100A6 AQP8 RPS6 CLEC4E FAT1 CREB3L1 PHGR1 VIM GATA2 PLEKHF1 RPS25 TENT5C HSPH1 NFKBIA NUDT8 HSP90AB1 ACTB CDCA7 FOS
43 CD8A TM4SF1 ACVRL1 SYNE2 P2RY13 DSP HOXD13 SLC44A4 OXNAD1 DPYSL2 LCK TXNIP RAB30 SARAF FAM107B EIF3B DUSP2 CKLF MCM7 CD48
44 NR4A3 ZDHHC9 SLC26A2 TTN GNB4 MCM7 ZG16 GOLM1 HIST1H2AJ PLXNC1 LAG3 CD84 XBP1 H3F3B DNAJB1 TXN CD3G PRF1 ENO1 XCL1
45 H3F3B DSP GPA33 PBXIP1 LILRB1 GFPT1 MT1H ITLN1 GAPDH CCL22 ACTG1 CD7 IGLC3 RPL28 LTB ECI1 HSPE1 ARHGDIB KNOP1 ANXA1
46 RASGEF1B AGR3 LINC02023 S100A4 THBD FOXK1 B3GNT7 MT1M ARHGAP30 HPGDS LCP1 EVL SSR3 RPS13 RORA VEGFA CD52 BCAS4 MACC1 ZFP36
47 ZNF683 SLIRP LGALS2 TNFRSF18 LILRB3 MISP LEFTY1 CLCA1 TRAC IRF8 SEPT1 RPL13 BASP1 TNFAIP3 GMFG LYZ BTG1 GPR174 XRCC2 UBB
48 CREM HMGB3 MT1G HLA-A MS4A4A ELF3 KLF4 MT1E ARPC3 PHACTR1 RBPJ SARAF HSP90B1 RPL13A CXCL13 HMGA1 ANXA1 MYL12A IGF2BP3 TIPARP
49 JUND S100A10 SMPDL3A PIK3IP1 ANPEP VPS13A WNK4 MLXIP MDFIC LINC00996 EVL RPS18 EAF2 SRGN TNFRSF1B S100A16 CD7 FASLG UQCRC1 PPP1R15A
50 HSPE1 CAMK2N1 MT1H RPL3 MS4A7 VIL1 NXPE1 MUC2 MSN CD40 CD3E RPS7 LY96 RPL21 SOD1 HMGB3 XCL2 PSMB9 DNAAF5 REL
51 HCST TFF1 PLCE1 LDHB C1orf162 MKI67 OLFM4 SOX4 FAM107B CYBB TRG-AS1 SLAMF7 IGLC2 RPL10 NR3C1 CTGF H3F3B MALAT1 TXN DUSP1
52 HSPD1 SLC12A2 PLCD3 KDSR PTAFR PDXK ITM2C HEXIM1 BST2 MAP1A ITGB7 CST7 SPCS3 RPS20 TSC22D3 NAPRT BAG3 ID2 CTBP2 JUN
53 UBB S100A11 DHRS11 RPLP1 KYNU ZKSCAN1 SPDEF DEF6 HLA-DQA1 ID2 RPL14 SPCS2 DDX5 PDCD1 TIMM13 HLA-DRB1 RPS27 TKT TRGC2
54 TNFSF9 TFF3 FAM3D ARHGDIB FPR2 SCML1 C10orf99 SELPLG PLEK PTPRC HLA-E BTG2 RPL27 TSHZ2 LGALS4 ANKRD37 TRBC2 CEACAM6 CCL5
55 NR4A1 MLEC NXPE4 SEPT6 TFEC DGAT1 PCSK1 CD3G PEA15 TRBC2 CD2 MANF RPS8 TBC1D4 CYC1 TUBA1A RPL34 NUCKS1 AC058791.1
56 LINC02195 PPA1 PADI2 TMEM173 LY86 SERPINB6 REG4 GZMB LYL1 RAB27A ARL4C UBE2J1 FXYD5 SARAF RHOB DEDD2 RPLP1 TUBA1B RPL21
57 DUSP5 BCL2L15 METTL7A TSHZ2 SIRPA EPRS GALNT12 CLEC2D PLAT SEPT7 MYL12A ITM2C HSP90AB1 IL13 POLD2 NABP1 SEPT7 ABHD2 SARAF
58 DYNLL1 MYO6 B3GNT7 CD3G SLC11A1 BRI3BP NANS CCL3 BMP2K CD63 RARRES3 CRELD2 UBB DEDD2 TFF1 UBB RPL19 RPL8 RPS20
59 GEM LYZ BTNL8 TMSB4X LILRB4 ABHD2 CDC42EP5 ID2 GRK3 AKAP5 MBNL1 SEC61B TAGAP HSPA8 KCNQ1 RHOB RPL23A PERP UBC
60 HSPA1B PKP3 RASSF6 ETS1 LILRA5 DMBT1 ATOH1 APOBEC3G CCDC88A CST7 LCP1 NUCB2 DUSP1 HSPA1A CFD FABP5 GRAP2 WDR34 SYTL3
61 BTG1 PRSS3 HRCT1 RAC2 FCGR2B TNFAIP2 RASD1 CORO1A HLA-DQB1 IFI27L2 CD3G DUSP5 RPS18 H3F3B ARL4A HSPA8 MIAT GPRC5A HSPA1A
62 ZC3HAV1 TALDO1 CKB CD3D S100A12 SMG1 TCEAL9 GZMA RASSF2 BCAS4 ID2 KLF2 AC058791.1 DUSP1 POLR2L GPR171 STK17A SDC1 HSPD1
63 HOPX CSTB ENTPD8 PFDN5 PLEK IRF2BP2 TPM1 ATP5F1E QKI THEMIS RPS20 SDF2L1 RPL5 RGS2 F12 H2AFX RPS19 FAT1 G3BP2
64 HSPA8 CLDN3 IGSF9 RPL13 AQP9 ROCK2 FOXA3 ITM2A FAM49A MYL12A RPS15A MIR29B2CHG RPS15A BAG3 TKT HSPB1 CORO1A ANXA2 TPT1
65 HLA-DPB1 IDH1 TMEM236 SMAP2 CLEC7A GCC2 ZBTB10 GIMAP4 RAB31 FYB1 PFDN5 SEL1L RPL37 CHORDC1 RPS2 STK17B THEMIS CDT1 SAMSN1
66 FOSL2 VDAC1 XDH ISG20 FGL2 RRBP1 FXYD3 GPRIN3 HLA-DRA ITGA1 RPL31 FNDC3A CD48 HSPH1 EIF4EBP1 SERTAD1 LINC02446 KLF5 TUBA1A
67 FASLG PLS1 ITM2C EPB41 F13A1 TRIP11 IGFBP2 MYL6 EBI3 CXCR3 GPR174 HSPA1L RPS25 PLIN2 BSG FYB1 RPL11 MYO6 CLEC2B
68 LINC01871 DSC2 PSD3 RPL23 CD163 PARP14 PLCB4 EID1 FCHSD2 LSP1 RPS23 SELENOS ZNF331 KIAA0319L SLC6A8 BTG2 PPIB RABL6 RPL34
69 LAG3 RPL8 NR3C2 RPL23A RETN NKTR HSD11B2 HNRNPA3 IGFBP7 GPR174 DDX17 TXNDC11 HSPA1A GPBP1 KCNQ1OT1 LINC02195 ARL4C ECT2 PTPN22
70 ANKRD37 GPX2 CLCA4 GPSM3 ALOX5 NUCKS1 AC103702.2 ARPC2 GPR183 CD8B GZMA ISG20 FOSB UBB S100A14 CD3E RPS27A MCM5 ARL4D
71 ANXA1 MUC17 TMEM37 CORO1B ITGAX EIF3A ASRGL1 FUT8 LILRB4 ACTB TOMM7 ELL2 RPS21 EIF1 S100A11 RGS16 LCP1 GMDS SERTAD1
72 DUSP10 HSD17B12 GGT6 RPS20 BCL2A1 CENPF CLDN3 CD52 HDC VIM GPSM3 TXNDC15 GPR183 GK CAMK2N1 EIF4A2 KIAA1551 MYH14 CD8A
73 APOBEC3G CHCHD2 UGT2B17 PNISR LMO2 GSN IFI16 SH2B3 SLFN5 GPR171 HIST1H2BG MALAT1 GEM EDF1 UBC RNF213 ZNF703 RPS12
74 TRBC2 MISP FABP2 RNF213 EREG AOC1 CD6 TPM2 GIMAP4 SEPT7 TMEM59 LDHB ZC3HAV1 IER3 DYNLL1 APBB1IP CCT5 PTMA
75 KDM6B CD46 SI RPS4X FGR LGALS4 CALM3 GSN MSN EEF1A1 TP53INP1 NABP1 TANK LCN2 ARHGDIB GPR171 DKC1 DOK2
76 GPBP1 LSR DST RPS14 TLR2 AGR2 TMEM50A CAVIN1 ARHGDIB TRBC2 FBXW7 EEF1A1 GBP2 ENTPD2 ALOX5AP KLRB1 CCT6A RPL3
77 CTLA4 APP AC254629.1 ACTG1 EMILIN2 TFF3 PTPRC HLA-DMB IL2RB RPL35A ERLEC1 RPL35A RAC2 TMSB10 TAGAP GIMAP4 PDZD8 HIC1
78 CRTAM GGCT SELENBP1 RPS26 STAB1 TSPAN1 ITGB2 LST1 SLA STK17A SPCS1 RPS3 MRPL18 CDC42EP5 EIF1 HLA-E BSG CYTIP
79 UBE2S EPRS SPINK5 HLA-C FAM49A CKAP4 EPS15 CDKN1A ARL4C KLRB1 SDC1 CACYBP TNF ATP5F1D EVI2B CLIC3 AP3D1 PDCD4
80 EIF1 EI24 CLDN23 MYL12A VSIG4 MARCKSL1 CD99 BCL2A1 APBB1IP BCL11B JUN RPS4X HLA-C PLPP2 RAC2 LCK CHTF18 NFKBIA
81 DDX5 GNG12 GPT RPL32 MARCH1 CANT1 CD247 CD74 CLIC3 CD3E TMEM258 RPL14 PFN1 SLC22A18 STK17A NLRC3 NTHL1 TAGAP
82 PRF1 RPL7 AHCYL2 EMB LRRC25 ELF3 ACTG1 NFKBID HLA-C PARK7 GLA MYADM TMEM173 RASSF7 SH3BGRL3 TBC1D10C MYBL2 RASGEF1B
83 PRMT9 SNRPE SELENOP GOLGA8A SLC15A3 C2CD4B DAPK2 MPEG1 SIT1 GMFG PPP1R10 EEF1B2 TNFAIP8 EPCAM KLRB1 PSME1 WARS RPL30
84 TAGAP PHGR1 MGLL LINC01943 SERPINA1 LGALS3BP KIAA0319L UVRAG ABI3 GZMM PPIB SC5D HERPUD1 CRACR2B EGR1 CD247 PHGR1 AC020916.1
85 GPR65 BCAP31 AOC1 RPSA SEMA6B CST3 UBL5 MALT1 RASAL3 XCL1 CYBA TRAT1 SERTAD1 PRSS3 IKZF3 LSP1 ITGA6 MCL1
86 NEU1 BACE2 VIPR1 RPL28 CCDC88A HDLBP SNX9 SPI1 NLRC3 OST4 ANKRD37 RPS28 TRBC1 NTHL1 PTPN22 GPRIN3 GCC2 CKS2
87 AC058791.1 S100A14 PBLD EEF1A1 TGM2 PIGR CD53 UGCG PSMB9 ITGA1 HIST1H1C DYNLL1 IKZF4 ARHGEF11 UBE2S TMIGD2 IDH2 CSRNP1
88 DEDD2 MDK B4GALNT3 RPL21 SNX10 SOX9 LAPTM5 CCDC50 LINC01934 RPL6 CITED2 HSPE1 CD3G HOXA13 PNRC1 GNAI2 MCM4 RPS6
89 CKS2 DDAH1 SEMA3B SH2D2A CD68 NEO1 SUSD3 PLAU CPNE7 ARHGDIB DNAJC1 RPS9 HLA-A NUDT1 PRF1 CCNI TTC3 IER2
90 TUBA1A SERPINB5 AMN YWHAB SLC43A2 SLC44A4 ARL3 HLA-DPA1 CORO1A PDCD4 RABAC1 NR4A2 MFHAS1 GADD45GIP1 TMSB4X CD48 SULT1C2 RPS29
91 RAB27A SEC61G SLC17A4 RPS12 CD300LF EPHB3 HLA-A CCR7 TIGIT OSTF1 ID3 RPS23 JUN HSPA6 SRSF3 GBP5 EBNA1BP2 RPS19
92 ELF1 MCRIP2 PI3 RAP1A TNFSF13B ATP8B1 RAB27A HLA-DPB1 PFN1 RPS13 LMAN1 SPOCK2 REL CRYAB ITM2A GZMM LGALS4 BRD2
93 MRPL18 SCD CCL28 SKAP1 SDC2 SMIM14 TLN1 CYB561A3 GPRIN3 HERC1 PABPC4 ARHGDIB IL27RA RPS15 S100A4 SYNRG KCTD3 H2AFZ
94 EVL CDH1 PLA2G10 ARL6IP5 CEACAM4 PCK1 ITGA2 LYN CCL4 RPL27 SLC38A2 RPL18A PPP1R2 PFKL MYADM CDC42 GSPT1 FOSL2
95 SH3BGRL3 ROCK2 PHGR1 TXNIP CFP PHGR1 SKAP1 CTSZ PNISR ARGLU1 FOSB RPL27A LCK PITX1 KLRD1 RPL28 CENPV RPS14
96 ID2 MUC13 APPL2 FAS CD300C PPP1R1B ARHGDIB ALOX5 GBP5 TLN1 HSPA1B HERPUD1 TIFA CHCHD10 HCST OST4 DNAJC2 IER5L
97 MRPS6 TMEM45B KRT20 FYB1 RNASE6 ARFGEF3 FYB1 LTC4S SP140 RNF213 FOS PMAIP1 ZNF267 HES1 ERO1B RBL2 CCND1 ZC3HAV1
98 ALOX5AP CTNNA1 MARCKS CLEC2D PTGS2 PCLO SH3KBP1 SLAMF7 CHST12 ETS1 HSPA5 ZC3HAV1 LAT EXOSC4 ARL4D RASGRP1 KARS MAFF
99 COTL1 SPTBN1 TFCP2L1 RPS15A FCGR2A TMC4 EMB TNFRSF11B GRAP2 TMA7 KCNQ1OT1 ZFP36L2 AHSA1 ANXA2 LSP1 SKAP1 IQCE ZFP36L2
100 CXCR4 CDX1 C1QTNF12 ICAM3 PMP22 ATP2C2 RHOA DAPP1 RPS19 PIK3R1 TPM1 PBXIP1 AC058791.1 HIST1H2BH SRSF7 EVL CD9 RPS3A

separation of epithelial, stromal and immune cells

Cell split