knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p020n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p020n"
## 
## $loom_file
## [1] "_data/velocyto/p020n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10
## 
## $demux
## [1] "TRUE"

Before filtering

## An object of class Seurat 
## 100542 features across 4052 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2480 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 TNFRSF17 TNFRSF17 TRAC TNFRSF17 ADIRF HEXIM1 LEFTY1 OTOP2 FOSB CA7 SOX4 GPR153 AQP8 SH2D6 LINC01871 ABCG2 SELENBP1 NXPE4 ITLN1 MZB1 MKI67 SPIB
2 DERL3 PRDX4 IL7R RGS1 CA1 MAFB AQP1 BEST4 JUN SPIB MAFB RAB3B CLCA4 BMX GIMAP7 CDA KRT19 PRAC1 CLCA1 TIMP1 TOP2A CA7
3 MZB1 DERL3 ANXA1 DUSP5 SELENBP1 HES1 ALDH1B1 C4BPA MZB1 UNC5C HEXIM1 TPSG1 CEACAM7 TRPM5 CD3G TMIGD1 CA1 NXPE1 REP15 JCHAIN CENPF HES4
4 FKBP11 CD79A CXCR4 SRGN CD24 SOX4 GSTO2 PCSK1N IGHA2 NOTCH2 AL021453.1 TBX10 TMIGD1 PTGS1 CD2 AQP8 ADIRF CD24 MUC2 TSC22D3 ASPM LYZ
5 EAF2 MZB1 GPR65 MZB1 SLC26A2 NEAT1 EPHB2 CA7 DUSP5 NEURL1 RASD1 FER1L6 ANPEP AZGP1 CD3D C11orf86 LGALS4 PCK1 RAP1GAP EVI2B SLC28A2 TMSB10
6 IGKC FKBP11 CD3E VIM LGALS2 SOCS1 LAPTM4B MSLN IGHA1 CPA6 PPP1R10 TFF1 SELENOP COL27A1 TRAC CLCA4 PHGR1 UGT2B17 KLK1 CD27 NUPR1 BEST4
7 SEC11C SEC11C TRBC2 UBE2J1 MT1X LINC01970 GSTA1 DMBT1 NFKBIA HEPACAM2 AL137077.2 MUC2 SLC26A3 OGDHL LCK SLC51B CA2 GPX2 RETNLB TNFRSF17 NXPE1 RPL37A
8 PRDX4 DUSP5 KLRB1 PDE4B UGT2B17 IER5 PTGDR OTOP3 JUNB GMNN HES1 REP15 PLAC8 SH2D7 CD3E TMEM37 LGALS3 HMGCS2 FCGBP SSR4 PLCE1 NOTCH2
9 IGHA2 CD27 LAPTM5 HERPUD1 FAM162A HIST1H4C RARRES2 SPIB IER2 HES4 IER5L S100P ABCG2 IGSF21 NKG7 GUCA2B KRT8 PLCE1 ANO7 UBE2J1 AHI1 RPL36
10 IGHA1 SPCS2 CCL5 SEC11C S100A14 PPP1R10 SPINK1 CA4 HSP90AA1 PROX1 IER3 FAM177B TRIM31 HCK PLEKHF1 HSD17B2 C10orf99 NUPR1 SPINK4 SEC11C SYNE2 PROX1
11 SELENOM SRGN CD2 JCHAIN SPINK5 RND3 STXBP6 MYOM1 TENT5C RHOV RMRP MLPH GUCA2A LRMP HCST CA4 CKB AC103702.2 TFF3 IGHA2 MLXIP RHOV
12 JCHAIN MEI1 LCP1 FKBP11 CHCHD10 MALAT1 PPP1R1B FRMD1 IRF4 TMSB10 FAM43A CAPN9 CA4 PSTPIP2 CCL5 PRAP1 S100A14 PIGR SERPINA1 VIM ATP2C2 HEPACAM2
13 UBE2J1 HERPUD1 CD3D CD69 ATP5MC3 RASD1 MRPS35 ADCY5 DNAJB1 BEST4 EPPK1 B3GNT6 MS4A12 ST18 GZMA SELENOP FABP1 ATP2C2 BEST2 DUSP1 MTRNR2L12 GMNN
14 BST2 IGHA2 CD3G DUSP2 CA2 IER3 ITGA2 CTSE HSP90AB1 CCND1 AL031777.3 IL3RA PKIB RGS13 CD8A MS4A12 MT1M LGALS2 WFDC2 TENT5C NXPE4 NEURL1
15 SPAG4 MANF LTB IGHA2 LGALS4 CA1 C1QBP C2orf54 BTG2 SIPA1L2 HIST1H4C SYTL5 EMP1 POU2F3 XCL2 TRIM31 FXYD3 B3GNT7 DLL1 MEF2C EML4 TMEM238
16 SSR4 SELENOM HCST TENT5C KRT19 IER5L EDIL3 GUCA2B UBC SHTN1 IER5 SERPINA1 TMEM37 HPGDS CST7 SECTM1 COX5B ERN2 LRRC26 IGHA1 AC103702.2 DMBT1
17 IGKJ5 SSR4 SLC2A3 EAF2 UQCRQ KRT19 PTPRO CDK18 HERPUD1 DIAPH2 EGR1 FCGBP CDA KIT HOPX CD14 CHCHD10 RARRES2 ATOH1 CD79A ZKSCAN1 RPS18
18 TSC22D3 GNG7 CREM EVI2B UQCR10 HIST1H2BG PRDX3 HES4 PPP1R15A ZNF704 AC087239.1 TCIM SDCBP2 DPYSL3 TRBC1 SULT1A2 AKR7A3 SELENBP1 TPSG1 DERL3 VMP1 RPL13
19 TIMP1 VIM FYN RGS2 MT1G BTG1 ESD SLC2A5 DUSP2 CDC42BPA HIST1H2BG GSN CEACAM1 B4GALNT4 CD96 PKIB ETHE1 PPP1R1B ST6GALNAC1 JUN FRYL RPS19
20 CD79A SLAMF7 HOPX RGCC GPX2 AL137077.2 ADH1C GUCA2A FOS RPL37A GLUL CDC42EP3 SECTM1 IL17RB FYB1 CEACAM7 MT1G MAVS SPINK1 FOS ASH1L RPS2
21 SSR3 RGS2 FYB1 CD27 C10orf99 HIST1H2BH SYPL1 CEACAM6 NR4A1 PRKAG2 CEBPB ZG16 ABCB1 PAK3 TRBC2 EMP1 TMEM54 TCEA3 ZG16 IRF4 IRF2BP2 RPL28
22 HSP90B1 CYTIP CD52 CD74 MAOA PIGR AP003774.4 CEACAM3 HSPA1B WNK2 PCK1 SYTL2 SLC17A4 GNG13 GIMAP4 CLDN23 S100A6 ZKSCAN1 MLPH FKBP11 NKTR RPL27A
23 CD74 UBE2J1 GPR183 DERL3 TXN PPP1R15A IMPDH2 PDLIM4 JCHAIN TLE4 NRARP RASEF SLC9A3 HTR3E CD7 PLAC8 COX4I1 LIMA1 RNASE1 LGALS1 PCK1 NBPF14
24 SDF2L1 SSR3 CD7 ELL2 PIGR CLDN4 DDAH1 REN PIM2 MTRNR2L12 LINC01970 BEST2 PRDX6 AVIL LRRN3 HRASLS2 MT1E SNORC SLC12A2 SEC61B ARGLU1 HES1
25 SPCS2 PDIA6 SAMSN1 SSR4 MRPL41 CSKMT EBPL MEIS1 CD74 CES3 HOXD1 RAB27A IFI27 DKK3 ALOX5AP HPGD SLC26A3 TXN IGFBP2 SSR3 HMGB2 RPL13A
26 CD27 IGKC S100A4 SPCS2 ATP5MD SELENBP1 CCT2 MDK EGR1 QSOX1 ADIRF KLK1 TRPM6 GRK5 LCP1 RHOF CD24 FAM162A AGR2 HERPUD1 RPL35
27 MANEA SPCS1 PTPRC CD79A MT1M POU3F1 TRIM2 SAMD9L UBE2J1 PHIP KRT19 ENTPD8 FABP1 FYB1 CD247 SLC26A3 MT1X PLA2G2A MCF2L SELENOM RPS15
28 TNFRSF18 IGHA1 GZMA SSR3 ACADS PHGR1 MYB ADRA2A H3F3B PRPF4B YME1L1 GDPD3 TSPAN1 CGNL1 GZMM ANPEP UQCRQ FAM3D HEPACAM2 HSP90B1 RPS8
29 SPCS1 CCR10 TRBC1 SEC61B NXPE4 AC023157.3 ECI2 SAMD9 TSC22D3 HES1 PCLO TFF3 RHOC ALOX5 CD8B LAMA1 MRPL41 GOLM1 AC005833.1 SDF2L1 SOX4
30 SPCS3 LY96 ARL4C LGALS1 COX5B ELF3 SMAGP NPY1R SSR4 ARGLU1 CHCHD10 MB FTH1 KLK13 LAPTM5 ENTPD8 ATP5F1D MLXIP IL1R2 SPCS2 RPL31
31 LGALS1 LGALS1 XCL2 SDF2L1 CYC1 S100A14 PPP1R14B GSN MEF2C RAB11FIP1 LGALS2 SCNN1A MUC12 CD300LF CD160 BTNL8 MT2A GAS6 RAB26 CD48 RPL37
32 EVI2B SPCS3 RUNX3 SPCS3 GPT TPI1 UGT2A3 SCIN DUSP1 MIR194-2HG ITLN1 C2orf88 ADGRG6 IL2RB GUCA2A HSD11B2 CES2 TPM1 PRDM1 RPS29
33 TP53INP1 JCHAIN LCP2 SLAMF7 DHRS11 YME1L1 RNF186 KRT20 VIM AL355075.4 EREG RHOU DCLK2 RGL4 CDKN2B-AS1 PIGR MTUS1 FRYL KLF2 RPL12
34 CCR10 TXNDC15 NKG7 AC016831.7 PLA2G2A CYCS CLDN15 SDCBP2 POU2AF1 HNRNPU SPNS2 HPGD PCP4 CD52 SDCBP2 CDKN2B-AS1 SLC4A4 SPDEF GNG7 RPS21
35 MANF POU2AF1 LINC01871 MANF COX7B AC006483.2 CDCA7 NEURL1 FKBP11 MT1G TPM1 LMO7 LIMCH1 LTB RSAD2 KRT18 B3GALT5 CREB3L1 PDIA6 SHTN1
36 SEC61B SEC61B LCK PRDX4 S100A16 EGR1 TSPAN6 PTPRR HSP90B1 NEAT1 SYT7 RARRES3 PLEKHB1 XCL1 RHOC S100A10 SLC26A2 ANXA13 MANF RPL29
37 CYBA TENT5C CD4 PIM2 PRAC1 MUC12 NFIA CEACAM7 JUND RHOB OASL HSD17B2 MATK KLRB1 RARRES3 ELOB VMP1 KIAA1324 EAF2 MSLN
38 SLAMF7 NUCB2 CST7 BST2 CKB MT1G TRABD2A HRCT1 UBB SOCS1 BCAS1 CLDN23 AFAP1L2 ABI3 CFDP1 KRT20 FRYL SYTL2 SPCS1 CCND1
39 CRELD2 ALG5 COL1A2 CYTIP COX6B1 EPPK1 KRTCAP3 MT2A ERO1B SOX9 MINPP1 DHRS9 GRASP EVL RFK SLC22A18AS KRT18 RPLP1 RPS11
40 PDIA6 CD74 CD83 HSP90B1 CHP2 COX5B CASP6 GUCY2C LGALS1 AC023157.3 SCGB2A1 SRI CCSER1 LCP2 LINC01559 TST ARFGEF3 H3F3B RPS27
41 PIM2 SDF2L1 TNF PDIA6 TCEA3 IER2 HNMT S100A10 BRD2 ELF3 DHRS9 RHOF FAT3 CORO1A CDHR2 COX6C ERN2 PRDX4 RPL10A
42 LY96 SPAG4 TNFAIP3 AC009404.1 NDUFB2 HIST1H3C KCNE3 LUZP2 BASP1 CDKN2B IFI27 KRT20 C11orf53 NLRC3 DDAH2 COX7B HPCAL1 PPIB MDK
43 HERPUD1 CRELD2 ZNF331 TSC22D3 HSD11B2 CA2 SLC44A3 CDHR5 CYBA NUPR1 LGALS9C ENTPD8 TREH JAML C2orf88 SLC26A2 FAM3D CYTIP RPS24
44 GNG7 IL10RA BCL11B IGHA1 NDUFB3 AL355075.4 PRAC1 GPA33 HSPA8 PIGR MGLL C11orf86 ZFHX3 TRGC2 ATP1B3 MT1H GSN GYPC SIPA1L2
45 VIM TRAM1 CLEC2D UBC FAM3D AL021453.1 FERMT1 CEACAM1 FKBP2 AC005837.1 MCF2L FXYD3 SPTLC2 KLRD1 RHOU GAPDH SLC4A7 SPCS3 LEFTY1
46 POU2AF1 RGS1 ARHGDIB YPEL5 HMGCS2 C6orf62 NUPR1 CDHR2 ZFP36L2 HIST1H2BH FOXA3 LINC02023 PLCG2 TRIB2 TMEM45B DBI TCEA3 KLHL6 RPL32
47 PPIB TSC22D3 SPOCK2 TRAM1 SULT1B1 NDUFB7 KIAA1324 HEPACAM2 HNRNPH1 NABP1 SPDEF SLC51B PTPN18 GPR174 C1orf115 CES2 WNK4 HSPA5 RPL11
48 EMP3 FAM49A CD8A SPINK2 FABP1 KRT18 DUT MT1H SDF2L1 PPP1R15A KAZALD1 GNA11 ANXA13 PSTPIP1 SMPDL3A COX6B1 DNAJC10 CD74 RPL18A
49 TRAM1 MIR29B2CHG GATA3 ANKRD28 NDUFB1 RHOB CFTR LYPD8 KLF2 ID2 SMIM6 ARL14 IGSF3 SKAP1 KRT20 PPDPF RAB27A XBP1 RPS9
50 CYTIP PDE4B DCN TAGAP SLPI HIST1H2AH BZW2 PROX1 MANF ATP5F1D TSPAN1 CFDP1 FRY TMIGD2 SLC9A3 SFN ITPR2 PIM2 CDC42BPA
51 MEI1 TPST2 EVL MEF2C ATP5ME Z93241.1 GPX2 MT1G MIR29B2CHG EFNB2 QSOX1 CDKN2B-AS1 TMOD2 RASGRP1 IL32 GIPC1 CDC42EP5 TP53INP1 HMGB1
52 CD48 EAF2 REL TIMP1 ETHE1 FZD8 MRPS9 SRI TIMP1 CBX4 SMIM5 DST ALOX5AP GIMAP6 DHRS9 COX7A2 GALNT5 SLAMF7 RPS5
53 GMFG BST2 ICOS ALG5 LGALS3 PHLDA2 UNG TM4SF5 AC093797.1 HSPA2 RFLNA SULT1A2 SDC2 NCALD PPP1R14D LGALS2 AKAP9 BST2 LGALS9
54 AMPD1 ICAM2 COTL1 CRELD2 COX6C POLR2A GGH SAMHD1 ELL2 DSP IL1R2 GPRC5A TBC1D2B FYN LYPD8 ITM2C MUC4 A1BG RPS12
55 XBP1 C16orf54 GZMM AC058791.1 GOLM1 AMD1 PHB2 ECE1 HSPA5 C6orf62 CAPN8 SERINC2 RASSF6 CLEC2D TSPAN1 ATP5MD KLF4 ERO1B RPL8
56 TENT5C IGKJ5 ETS1 SERP1 PHGR1 CEBPB CERS6 CCNYL1 DNAJA1 TLE4 FSIP2 MIER3 ITPR2 ARHGDIB CTSA MYL6 TCIM IGKC RPS23
57 NUCB2 HSP90B1 XCL1 SPCS1 ATP5F1D DSP TMEM97 PRKG2 TGFB1 TLCD2 SPATS2L CD14 ST6GALNAC3 CMTM3 PRR15 NDUFB7 GPRIN3 MANEA PRAC1
58 TXNDC15 RHOH TUBA1A TNFRSF18 PRDX5 KRT8 APEX1 PRSS3 GADD45B IVNS1ABP LINC01559 CTSA PIK3CG ITGA1 BMP3 VSIG2 NEDD4L RPL10 RPL14
59 IGF1 XBP1 CD96 CCR10 PYCARD TMSB10 STEAP1 PPP1R14C FLNA FZD5 SELENOP LINC01559 IL13RA1 PTPRC PRDX6 ATP5MC3 GOLGB1 DNAJB1 MT1G
60 ISG20 OSTC CD69 SELENOM MT1E AL022069.1 GSR NOTCH2 CD69 BTG1 ANKRD36C DSC2 HOTAIRM1 PITPNC1 CEACAM6 FAM162A GSE1 GADD45B YBX1
61 OSTC TIMP1 SRGN BASP1 SLC22A18AS CDKN1C SNRPE CARD16 SLAMF7 DGAT1 LYPD8 LINC01133 EIF1B CTSW IFI27 SMIM22 ELF3 SRGN MYO10
62 DPP7 GYPC PIP4K2A HSPA5 NDUFA1 ATP5F1D CCND2 VIPR1 RRAD MT1X P2RX4 MYL12B TPM1-AS IL7R ACAA2 NDUFA1 RPL36 ISG20 RPL38
63 A1BG RAB30 COL3A1 CD48 FXYD3 ZFP36L2 SYT13 MISP CD27 NUFIP2 KRT20 ATP1B3 MARCKSL1 ARHGAP9 PRSS3 PRSS3 NUPR1 DUSP5 RPS6
64 ENAM SUB1 ALOX5AP NUCB2 NDUFV1 NRARP SLC12A2 TMEM176B CITED2 POU3F1 PLAC8 SFN PTPRJ ANXA1 CD177 CDX1 NR4A1 CYBA RPL36A
65 FXYD5 CD48 PDE4A GNG7 FABP2 TUBB4B BEX3 CLCA4 CD79A AL139274.2 AGR2 MISP HIP1R RGS10 IFIT1 GGT6 ETS2 TNFRSF18 PYCARD
66 AC007384.1 PRDM1 RILPL2 KDM6B BCL2L15 AC099778.1 SUCLG1 KRT8 ZFP36 AC020916.1 DST PRSS3 LIPG ARL4C SIRT6 TSPAN8 GALNT12 IER2 GDF15
67 DNAJC3 IGLV3-1 CXCL14 SELENOK AKR7A3 S100A6 MECOM PPDPF PRDM1 NDUFB7 MUC13 ACAA2 RUNX1 CXCR6 GPRC5A UQCR10 SNORC TCF4 AL139274.2
68 ICAM3 EMP3 LUM DNAJC3 CISD3 ATP5ME DAZAP2 LGALS3 HSPA1A PMAIP1 SMIM14 BTNL8 KMT2C SLA SERINC2 FAM3D BCAS1 CITED2 RPS3
69 RPLP1 DPP7 A2M RHOH SUCLG1 GADD45B PALLD ID1 EVI2B PLCE1 FRMD3 CDHR2 PBXIP1 APBB1IP FTH1 UQCR11 HSD11B2 EMP3 RPLP2
70 ITGB7 TNFRSF4 CCL2 EMP3 TLCD2 MT1E LBR EEF2K ITGB7 PCF11 EGLN3 HLA-A TPM1 HIC1 HHLA2 ATP5ME KCNQ1OT1 HSPA1A RPL19
71 SEC62 RGCC SLA ZNF331 NDUFS5 PCK1 COQ3 TMEM176A SSR3 RND3 MUC4 PRR15 NCMAP PTPN22 MEP1A ACADS ATP2C2 CRELD2 QSOX1
72 ALG5 PPIB PTPN22 ERO1B SLC39A5 CITED2 AGMAT TST SRSF2 MUC17 FAM3D TMEM54 MTSS1 SPNS3 SFN CDHR5 CRACR2B IL16 DIAPH2
73 BRSK1 QPCT CD247 HSPA13 COX4I1 CHCHD10 LRPPRC TRIM31 SRGN RSRP1 CEACAM6 MEP1A FES S100A4 MYL12B ID1 GDF15 BTG2 RPS16
74 SERP1 BASP1 IL2RB ICAM2 MVP AL135925.1 PAICS HSD17B2 TCF4 ELOB TCF7L2 HRASLS2 MAP7 MATK AGPAT2 AKR1B10 PRAC1 RPL3 DSP
75 FKBP2 CYBA CCL4 FKBP2 RNF186 AREG GLIPR2 GRN IGLC2 GOLGB1 CLDN4 TSPAN3 TAS1R3 ITGAL CTSZ SLC51B GMDS SERP1 RPL35A
76 TPST2 EVI2B CCL4L2 DPP7 ATP5MPL MARCKSL1 EI24 DSC2 RGS1 AL118516.1 TM4SF5 VAMP8 FGFR4 TBC1D10C CYP3A4 BLOC1S1 LGALS4 TRAM1 AL118516.1
77 CLPTM1L TMED10 GPR171 PRDM1 B3GALT5 CLDN3 UGT2B17 DST GPBP1 MID1IP1 DDX60 CDHR5 ANLN PIK3CD LMO7 C19orf70 DISP2 UBC SNRPD2
78 REEP5 CTSH GZMK NFKBIA CDX2 ATP5F1E NDUFAF4 MT1E HYOU1 EIF4E AREG TCF7L2 KRT18 IKZF3 JPT1 GPT RAB11FIP1 SPAG4 MT1E
79 PDK1 PIM2 APBB1IP IRF4 MT1H AL118516.1 RAB25 SMIM5 GLA SFPQ KCNK1 TMEM45B TET2 RAC2 FABP1 ATP5F1E SCNN1A POU2AF1 GNPTAB
80 IRF4 DDOST IFNG TSPYL2 PCK1 EIF5 GCNT1 CKB PDIA6 ARHGEF11 ERI3 SGK2 MYO1B COTL1 MISP AC008397.1 SH3PXD2A FOSB CISD3
81 ICAM2 TNFRSF18 STMN2 SUB1 ATP5MC1 LGALS4 GGCT GOLIM4 PDIA4 TMC5 LPIN2 PHGR1 TUBA1A SPOCK2 CEACAM1 CLDN3 EHF PNRC1 HEXIM1
82 PDIA4 FCRL5 NR4A2 PPIB UQCRC1 KCNQ1OT1 CCT6A TTC39B IGLC3 ZBTB10 GALE EPCAM ARHGEF38 SLA2 VAMP8 MUC12 GALNT3 GMFG RARRES2
83 RPN2 RPN2 RORA TCF4 ENDOG GAPDH EPHB3 CDC42BPA FBXW7 ARL14 CREB3L1 CLDN4 PROX1 CKLF TRPM6 GLDN EMP2 ICAM3 TLE4
84 CTSH SELENOK NR4A3 MIR29B2CHG NDUFS6 MT2A GMPS SELENOW NXF1 CITED2 RHOC CD177 LYZ TTC39C ABCB1 TNNC2 HES6 HSPA1B BDP1
85 LINC02362 ITGB7 RBMS1 GLA OPLAH HSP90AA1 EIF3L ID4 BST2 KCNK5 S100A6 SKAP2 TRG-AS1 SRI NDUFB2 MAP7 DUSP2 S100A11
86 PRDM1 HSPA13 CPA3 PDIA4 S100A10 ELOB PABPC1 ITM2C RPL21 LDLR TMPRSS2 ATP2A3 SIRPG FHL2 MIR22HG CLDN3 FTL RPL22
87 SEL1L ISG20 ADH1B GMFG CES2 KLF4 SNX7 S100A6 DPP7 HLA-A LAMB3 BCAM THEMIS ISG15 NDUFB3 RPL27A UBE2S IER5
88 TCF4 THEMIS2 GLIPR1 SEL1L AC008397.1 ADIRF MRPL15 ANK3 RPL13 FHL2 MGLL SOX9 SLFN5 SPATS2L TSPAN1 KLF3 FKBP2 RPL7A
89 GYPC CLPTM1L C1S POU2AF1 MT2A SLC26A2 ALDH9A1 FXYD3 CYTIP S100A6 C3orf85 TPBG SASH3 SLC17A4 FAM213A INSR PABPC4 ELF3
90 SUB1 PAIP2B PTN HSP90AB1 TMEM54 HOXD1 GMNN AOC1 RPL3 SDCBP2 LRRC1 CHDH GPR171 PTPRR S100A16 TRPM4 CD44 IER5L
91 LMAN2 ENAM SCARA5 RPN2 FAM213A CBX4 WFDC2 KRT19 CDKN1A DYRK2 GPA33 NRCAM SIT1 LAMA3 DEFB1 TCF25 FBXW7 RACK1
92 HSPA13 SERP1 ABCA8 TIFA VSIG2 IVNS1ABP IARS2 TNFRSF1A IGKC SLC7A11 FHL2 UTRN PREX1 FXYD3 PHLDA2 ATF3 RGCC RPS26
93 IGKV4-1 DNAJB9 CALD1 MCL1 PPP1R1B EZR DPH5 VSIG2 EGR3 MLLT3 SEMA3B SNX9 STK17B PLA2G10 CYC1 LDLR DNAJC3 NOP53
94 SEC61G TMEM258 GIMAP7 JUND MRPL34 SLC4A4 CD24 MUC13 PPIB ATOH1 BTNL3 PLCXD1 MSN C8G TSPO RPS11 SEC62 RPL23A
95 DUSP5 IFNAR2 JAML RAB30 HSBP1L1 LLGL2 CXCL3 C1orf21 SLC38A2 EPS8L1 C1orf115 ANKAR PPP1R18 APPL2 C2orf88 DSP RPL22L1 MAFB
96 FAM30A ICAM3 ITGA1 TMEM258 C19orf70 TMEM238 ARSE LINC01559 SEC11C TRANK1 MYLK FAM171A1 PRF1 EPCAM PRDX5 RPL31 TMED9 RPS14
97 RPL10 LMAN2 HLA-DRB1 GYPC DBI NUFIP2 PDSS1 CFDP1 SPCS3 KLF2 PDE9A CHD6 RBMS1 CHMP2A MVP VSIG2 ITGB7 ATP5F1E
98 IGLV3-1 ITGA8 MSN SSR2 ATP5F1E CDKN2B EIF3E ATP1B1 FNDC3A TSPAN3 PPP1R14D DCP2 DOCK8 MDK CSTB NEAT1 FAU RPL34
99 SRM TAGAP RASGRP1 RPL10 EXPH5 PCLO DMAC1 SLC20A1 HLA-E GPRIN2 SLC25A5 ANXA4 IKZF1 SULT1A1 SPDEF AGR3 JUNB MARCKSL1
100 MEF2C MEF2C CFH SRM EHF BTG2 TFAM PLXNB2 ISG20 FXYD3 ISG15 KIAA1324 TRIM22 ARL14 DHRS11 RPS15 RPS27A RPL30

separation of epithelial, stromal and immune cells

Cell split