knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p017t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p017t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p017t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 7892 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 5532 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 26 27 28 29 3 4 5 6 7 8 9
1 IGHA2 TNFRSF17 CLCA1 ASCL2 PLA2G2A SLC26A3 CCL5 RNF43 IL7R GUCA2B MGP ADH1C IL7R FABP4 TFF1 AC005833.1 LUM CXCL14 MYH11 NRXN1 GZMA MZB1 CPA3 CCL5 MZB1 GUCA2A SPINK2 HLA-DRA HLA-DRA MZB1
2 MZB1 MZB1 ITLN1 DPEP1 REG1A CDHR5 GZMA OLFM4 CCR7 CEACAM1 LUM C15orf48 CD3D ACKR1 TBX10 HEPACAM2 SFRP2 POSTN RERGL CDH19 NKG7 TNFRSF17 TPSAB1 CD3D IGHA1 SLC26A3 JCHAIN LYZ LINC01781 TNFRSF17
3 DERL3 JCHAIN REG4 GPX2 ADH1C MS4A12 NKG7 GPX2 CXCR4 CA4 DCN AC008397.1 KLRB1 VWF MUC2 RETNLB DCN EDNRB PLN PLP1 CCL5 IGHA2 MS4A2 GZMA IGKC CEACAM7 MZB1 CXCL8 MS4A1 DERL3
4 TNFRSF17 IGHA2 REP15 LEFTY1 OLFM4 CEACAM7 CD3D AC103702.2 RPS27 C11orf86 SFRP2 SLPI LTB PECAM1 REP15 REP15 COL6A3 EMID1 CSRP2 MYOT XCL2 IGHA1 HPGDS NKG7 JCHAIN MS4A12 TNFRSF17 HLA-DPB1 BANK1 IGHA1
5 IGKC IGHA1 MUC2 NKD1 LCN2 SLC9A3 CD3G LEFTY1 FYB1 TMIGD1 C7 PLA2G2A CD2 AQP1 TPSG1 RAP1GAP CCDC80 FOXF1 NOTCH3 PTPRZ1 CXCR4 IGKV4-1 ADCYAP1 CD52 TNFRSF17 ANPEP SEC11C IL1B VPREB3 IGHA2
6 IGHA1 SSR4 KLK1 LGR5 IGFBP2 CA1 LINC01871 XIST LTB CEACAM7 COL1A2 AKR1C3 TRAC CLDN5 MB ATOH1 C3 STMN2 LMOD1 L1CAM PRF1 SSR4 SLC18A2 CD3G DERL3 AQP8 SSR4 C1QB HLA-DPB1 SSR4
7 FKBP11 DERL3 HEPACAM2 PROX1 SLPI CA2 CD8A ELF3 RPS27A GUCA2A COL6A3 LCN2 FYB1 GNG11 TFF3 ITLN1 FBLN1 BMP5 C2orf40 XKR4 CD3D DERL3 TPSD1 CD2 SSR4 CA4 DERL3 HLA-DRB5 PAX5 SEC11C
8 SSR4 SEC11C SPINK4 EPHB3 GOLM1 ANPEP CD2 HOXB3 RPS12 CEACAM6 C3 IGFBP2 CD3G RAMP2 GPR153 SPDEF SFRP4 ALKAL2 CCDC3 NRXN3 HCST SEC11C HDC CD3E SEC11C SLC9A3 TENT5C AIF1 HLA-DPA1 JCHAIN
9 JCHAIN SPCS2 TFF3 S100P LEFTY1 GUCA2A CD3E ABCC3 RPL34 HSD17B2 CCDC80 PKP2 CD52 EGFL7 FCGBP ANXA13 C7 ADGRL3 CNN1 CDH2 CD7 SDF2L1 CTSG HCST FKBP11 CEACAM1 SPCS2 C1QA TLR10 IL7R
10 SEC11C FKBP11 SERPINA1 GDF15 AGR2 FABP1 GNLY MKI67 RPS3A TRIM31 FBLN1 AGR3 CD3E COL15A1 SYTL5 REG4 VCAN FENDRR CASQ2 COL28A1 GZMB FKBP11 CALB2 CXCR4 HERPUD1 GUCA2B HERPUD1 TYROBP HLA-DRB5 CD3D
11 HERPUD1 TENT5C FCGBP FOXQ1 DMBT1 SELENBP1 KLRB1 CD24 RPL21 TMEM37 DPT REG1A RPS27 CD93 ZG16 CLCA1 ASPN NRG1 SUSD5 FOXD3 IFNG DUSP5 RHEX KLRB1 SPCS1 KRT20 IGLC2 CCL3 LINC01857 FKBP11
12 SDF2L1 SPCS1 SPINK1 TGFBI AKR1C3 KRT19 HCST TRIM2 RPS15A SDCBP2 SERPINF1 GOLM1 CXCR4 CALCRL TM4SF5 SPINK1 THY1 C5orf66-AS1 SYNM GPM6B CD3E PELI1 GCSAML TRAC IGHA2 CDHR5 IGLV2-14 S100A9 CD22 IGKC
13 CD79A IGKC ST6GALNAC1 TESC CD24 KRT20 CCL4 DSP RPL32 AQP8 C1R DDAH1 TRBC1 EMCN KLK1 KIAA1324 SULF1 FOXF2 RCAN2 PRIMA1 CD247 IGKC AL662860.1 TRBC2 UBE2J1 SLC51B IGLC3 FGL2 PARP15 CD3G
14 IGKJ5 HERPUD1 ATOH1 KLK10 MUC4 SLC26A2 CD52 CENPF BTG1 DHRS9 C1S UGT2B17 PTPRC CAVIN2 SERPINA1 TPSG1 DPT F3 ACTA2 GFRA3 GZMK ANKRD28 KIT CST7 SDF2L1 MISP CD79A AC020656.1 CD83 CD3E
15 POU2AF1 PRDM1 SPDEF PCCA PIGR FXYD3 TRAC KLF5 RPL37 PKIB ASPN DMBT1 RPLP1 PODXL SPINK4 CREB3L1 FBN1 PDGFD MYOCD SLC35F1 IL32 POU2AF1 GATA2 IL7R LY96 CA2 SPCS1 C1QC CD37 TENT5C
16 XBP1 SSR3 ZG16 FIBCD1 UGT2B17 TSPAN1 TRBC2 ZKSCAN1 RPS29 OASL VCAN UGT2A3 BTG1 LIFR ENTPD8 SERPINA1 FSTL1 TMEM119 SYNPO2 S100B CST7 JCHAIN CMA1 PTPRC TENT5C PRSS3 SPCS3 CD83 TNFRSF13C IGKJ5
17 UBE2J1 UBE2J1 RAP1GAP CLDN2 SELENBP1 KRT8 KLRD1 PIGR TPT1 SLC51B BGN FGFBP1 TMSB4X RBP7 MLPH ST6GALNAC1 PCOLCE SCT MCAM CRYAB LCP1 IGKJ5 KRT1 TMSB4X EAF2 SFN UBE2J1 HLA-DRB1 CD74 KLRB1
18 PRDX4 SEC61B ANO7 TFF3 HMGCS2 MISP CD7 MUC4 RPL19 SLC26A3 AKAP12 PPP1R1B RPS27A S1PR1 CTSE KLK1 CTSK PDGFRA C11orf96 SOX2 TNFAIP3 HERPUD1 IL1RL1 S100A4 CD79A TMIGD1 PIM2 CYBB LY86 HERPUD1
19 SPCS2 IGLL5 TPSG1 LRP4 S100A14 CES2 TRBC1 L1TD1 RPL11 PRAP1 OGN S100A14 RPS15A CDH5 REG4 MB OGN EMILIN1 SNCG ANGPTL7 CCL4 IGLV3-1 SVOPL GZMM SPCS2 TSPAN1 PABPC4 MPEG1 IRF8 TRAC
20 SPCS3 SPINK2 MLPH VSNL1 TSPAN8 GPA33 CXCR4 MTRNR2L12 RPL30 CDHR2 BICC1 KLF5 TNFAIP3 HEG1 FAM3D CAPN9 EFEMP1 ADAMDEC1 PPP1R14A TSPAN11 DUSP4 CD79A SLC45A3 CCL4 PRDM1 SDCBP2 PRDM1 MS4A6A BLK DUSP5
21 FKBP2 FKBP2 BEST2 NEBL GPX2 PHGR1 LCP1 FAT1 RPL23A CDA COL3A1 CDX1 SRGN PALMD S100P FOXA3 COL8A1 PCDH18 C1QTNF1 MIA BCL11B PDIA4 PNMT SRGN XBP1 FXYD3 MANF CD14 CXCR4 PIM2
22 MANF DUSP5 AGR2 WFDC2 UGT2A3 TMEM54 CST7 MUC12 RPS20 SLC9A3 PCOLCE CD24 S100A4 NUAK1 ITLN1 NEURL1 GUCY1A1 LINC01082 IL17B LGI4 SRGN PIM2 PTGS2 TRBC1 HSP90B1 PLAC8 EVI2B CPVL RPL32 CD27
23 HSP90B1 HSP90B1 NEURL1 CDCA7 HADH UGT2B17 IL7R MIR194-2HG RPLP2 HHLA2 SCN7A S100A16 RPS12 ADGRF5 CLDN4 GALNT8 SCN7A PDPN MAP3K7CL NTM IL7R RAB30 LTC4S CD7 MANF MEP1A SEC61B PTGS2 RPS27 IGLV3-1
24 IGLV3-1 PIM2 KIAA1324 SLC12A2 LGALS4 CD24 PTPRC SELENBP1 LEF1 TMPRSS2 THBS4 CDH17 RPL34 PTPRB SPDEF FABP2 OMD HAPLN1 SLC7A2 S100A1 CD2 SPCS3 FCER1G ARHGDIB SPCS3 SLC20A1 IGHM MNDA RPLP2 SDF2L1
25 PIM2 SPCS3 MUC4 TSPAN8 MT1G PLAC8 GZMB DPEP1 RPL9 ABCG2 SERPING1 OLFM4 TRBC2 CLEC14A SCNN1A DNAJC12 SHISA3 CYGB NRIP2 MAP1B TRAC PRDM1 RGS13 LINC01871 IGKJ5 TMEM54 IGLL5 ITGB2 NR4A2 PRDM1
26 CD27 SDF2L1 RETNLB RNF43 PPP1R1B PIGR TMSB4X MGAT4B RPS13 ANPEP ADH1B RARRES1 RPS29 MMRN2 IFI27 TMEM61 BOC EDIL3 NRGN KCNMB4 LAIR2 LY96 MITF CD8A PRDX4 FABP1 HSP90B1 C5AR1 MARCH1 CD79A
27 SSR3 EAF2 CDC42EP5 SOX9 KLF5 ETNK1 TNFAIP3 VMP1 RPL35A CLDN23 PDGFRA AXDND1 RPL21 JAM2 CLCA1 FMOD TNXB NSG1 LDB3 PMP2 PTPRC TP53INP1 CD84 LCP1 FKBP2 GPA33 EAF2 LST1 CD1C UBE2J1
28 EAF2 MANF CREB3L1 SERPINB5 FAM3D AQP8 EVL NKTR RPS14 HPGD GUCY1A1 DSG2 RPLP2 LDB2 FXYD3 ARFGEF3 CD248 TFPI2 BCAM SPARC RASGRP1 TRAM1 RAB27B BTG1 CYBA DHRS9 SUB1 HLA-DMB RPL35A AC058791.1
29 SPCS1 IGLV2-8 ERN2 PERP EPCAM AOC1 S100A4 ARGLU1 RPL13 MEP1A COL1A1 CKMT1B TPT1 SOX18 CD177 RNASE1 MFAP5 PLAT IGFBP5 NGFR KLRD1 SSR3 GPR65 SH3BGRL3 SSR3 KRT8 IGHA1 RNASE6 RPSA RGS1
30 CCR10 ANKRD28 KRT18 SOX4 SIAE DHRS11 PTPN22 RPL13A SMPDL3A SPON2 CES2 RPL37 PLVAP CAPN9 GNE BGN PITX1 MYOM1 COL18A1 PIP4K2A HSP90B1 TYROBP FYB1 NUCB2 SMIM22 DUSP5 HLA-DMA CD79A XBP1
31 TENT5C CYBA SCNN1A SLITRK6 C10orf99 SLC20A1 XCL1 JUNB PTPRR BOC SULT1B1 RPS19 TMEM88 ELF3 MUC2 MRC2 COL3A1 TAGLN COL1A1 ICOS SPCS2 CLU TNFAIP3 POU2AF1 AOC1 SSR3 HLA-DQB1 ZFAS1 MIR29B2CHG
32 SLAMF7 SUB1 LGALS4 TNS4 AC103702.2 PRSS3 XCL2 BCL11B C1orf115 MMP2 ETHE1 RPL32 TM4SF18 RASEF SLC12A2 ABI3BP MMP2 DES GAP43 LCK IGHV3-15 SLC24A3 GZMK CRELD2 PRAP1 CYBA IGSF6 CD52 SPCS2
33 PRDM1 CD79A MCF2L KRT18 CES2 LGALS4 IL2RB RPS6 KRT20 TSHZ2 GIPC2 RPL28 THSD7A VSIG2 WFDC2 SPON2 MXRA5 ACAN STEAP4 CD8A IGHV3-74 PTGS1 RPS27 PDK1 HPGD FKBP11 MRC1 CD19 TNFRSF4
34 CRELD2 IGHV3-74 RNASE1 L1TD1 SH3RF2 SULT1B1 GPR171 RPS21 PRSS3 COL14A1 EPCAM RPL11 CYYR1 KRT18 SPINK4 C1S SFTA1P OR51E1 TUBB2B ITK DNAJC3 SAMSN1 MALAT1 ISG20 COL17A1 TSC22D3 STAB1 LTB SPCS3
35 NUCB2 RGS1 CRACR2B EPHB2 MAOA FLNB HOPX TXK EMP1 APOD TSPAN8 RPL30 FILIP1 CEACAM6 TSPAN13 SERPINF1 TSLP MYL9 FXYD1 CD3G SPINK2 HPGD PTPN22 PIM2 CDKN2B-AS1 IRF4 CSF1R RPL37 CYBA
36 HSPA1A UBC FAM3D DMKN SNORC GPT CD247 SELL ALDOB COL6A2 MAOA RPS3A KDR CDC42EP5 GMDS ADH1B VSTM2A ACTG2 IGFBP7 MYO1G MANF IL18R1 RPLP1 SEC61B PKIB FKBP2 CLEC10A RPS20 RAB30
37 PDK1 MIR29B2CHG WNK4 CLDN4 PKP2 CEACAM1 ALOX5AP RPL10 PPP1R14D SPARCL1 RAB25 RPL9 PCDH17 TSPAN1 MLPH SLIT3 COL1A2 MFGE8 SPP1 XCL1 MIR29B2CHG CTTNBP2 CD69 SEL1L TRIM31 MEF2C JAML BTG1 HSP90B1
38 SEC61B EVI2B ELF3 MSLN DSP MEP1A TRGC2 RPS7 MISP FBN1 PAPSS2 RPS20 ARHGAP29 MUC13 BEST2 FN1 COL6A3 TPM2 TMOD2 TRBC1 SEC61B BACE2 ID2 IGLV3-1 SLC6A8 UBC CLEC7A RPL21 TNFRSF18
39 MIR29B2CHG SELENOS L1TD1 SPINK4 KRT19 MIR194-2HG SRGN RPL23 CLCA4 RARRES2 C10orf99 MALAT1 FLT1 GSN GALNT7 PLAC9 COL6A2 TNS1 MPZ RNF125 RPN2 CCL22 ARL4C CD27 KRT19 ISG20 SPI1 RPL13A PRDX4
40 HSPA1B IGKJ5 ANXA13 DACH1 TMEM238 SDCBP2 PRF1 RPS26 MS4A12 FNDC1 TMEM30B RPL27 BCAM KRT20 ANO7 MMP2 LOXL2 EFHD1 CADM2 ARHGAP9 IGLC2 ADGRE2 RPS15A SELENOS CDHR2 TRAM1 FPR3 RPS28 HSPA1B
41 CYBA HSPA5 HSD11B2 FERMT1 CYC1 CHP2 ARHGDIB RPL28 CGN CTSK MGST2 CD40LG SNCG SPINK1 AGR3 BICC1 COL4A5 DACT3 SCN7A ETS1 ANKRD37 MAOB GZMH SUB1 MYH14 RAB30 FCER1G RPL27A ELL2
42 JSRP1 CD27 GMDS AGR2 CDH17 TST GPR65 RPS8 COL17A1 SULF1 TST HCST ROBO4 QSOX1 MBOAT2 PDGFRA COL1A1 ANGPT1 COL1A2 SLA CYBA VWA5A ACTB IGKV3-11 IFI27 IGKC SLC8A1 RPL34 SPCS1
43 IGKV4-1 IRF4 FOXA3 TM4SF1 MT1E CLDN4 BTG1 TRBC1 PLS1 SRPX AGR2 RPL38 NRN1 SMIM22 HES6 PI16 COL6A1 NTRK3 CHL1 TRBC2 PRDX4 ACSL4 RPS27A MIR29B2CHG SLC17A4 MIR29B2CHG MARCH1 RPS29 EAF2
44 SELENOS PDIA6 TCEA3 RPL36 NXPE4 MT1G MYBL1 RPL31 RHOF COL6A1 CHP2 RPL13A TIE1 AGR2 SOX9 PRRX1 CDH11 CAV1 MYL9 REL UFM1 TNFRSF9 RPS29 IGKV3-20 DHRS11 TP53INP1 OLR1 RPS14 MANF
45 ALG5 CRELD2 GNE RPL12 CDX2 CDKN2B-AS1 CKLF RPS16 CDHR5 CALD1 UGDH RORA PREX2 CKB CREB3L4 ISLR WNT5A CDH6 SPARCL1 TMSB4X HSPA5 GLUL GPR171 H1FX SULT1A2 IGHA2 MS4A4A GPR183 BCL2L11
46 DUSP5 POU2AF1 ENTPD8 MACC1 PLCB4 SMIM22 SLA RPL38 GPA33 THBS2 KRTCAP3 RPL35A ZNF385D HEPACAM2 AGR2 C1R TSPAN2 EDNRA TIMP4 ARHGDIB FKBP2 AC020571.1 RPS20 IGKV1-5 ENTPD8 RGS1 C3AR1 RPS15A POU2AF1
47 ANKRD28 IGLC2 ARFGEF3 ETS2 ATP8B1 C10orf99 TMIGD2 RPL6 GPRC5A LHFPL6 UQCRFS1 RPS13 CD34 FOXA3 TFF3 COL14A1 TPM2 CAP2 TIMP3 RUNX3 JUN ANXA1 GNLY IGLC3 PHGR1 SDF2L1 MS4A7 RPS11 TSC22D3
48 RAB30 HSPA1B SLC39A11 RPL35 KRT8 SLC51B GZMM RPL27A SLC1A1 EMILIN1 HMGCS2 DNAJA1 TEK KRT8 TCEA3 COL5A1 IGFBP5 MYLK MCAM CD52 IGLC3 AC090152.1 HLA-A IGHV3-23 HSD17B2 ELL2 P2RY13 RPL11 CCL4
49 IGKV3-20 NUCB2 SLC12A2 RPL7A ATP5MC3 TPRN CD96 RPLP1 SLC17A4 ABCA9 PPP1R14D RPL19 ERG MUC4 SCNN1A THBS4 TRPA1 MAP1B PMP22 S100A4 LEO1 RPS19 IGLC2 ALDOB HSPA5 CD163 RPS8 CYTIP
50 ANKRD37 XBP1 KRT8 ANXA3 CLDN3 PRSS8 CD69 RPS28 RFK THY1 SI RPL13 FAM167B PLA2G10 AP002498.1 MXRA8 C1S CAVIN3 CLU ID2 SRGN XCL2 HSPA5 CES2 ANKRD28 ITGAX EEF1B2 FKBP2
51 LY96 PRDX4 GALNT5 WNK2 CDX1 CDH17 RORA TOMM7 PLAC8 FN1 MPC2 RPL23A PCAT19 ST6GALNAC1 PPP1R1B COL1A2 PAPPA2 FHL5 GAS7 STK10 P2RX1 DNAJA1 IGKV4-1 ETNK1 DNAJC1 VSIG4 RPL23A SUB1
52 PDIA6 ISG20 SYTL2 REG4 GMDS MT1H CREM UBA52 CEACAM5 PRELP AKR1B10 TOMM7 MYCT1 TPM1 HPCAL1 AKAP12 RARRES2 SPARCL1 SEMA5B LAYN CAPG LCK DDIT4 PLS1 PPIB LILRB2 RPL30 SEC61B
53 ERLEC1 SELENOK KLF4 RPS2 C15orf48 PCK1 LCP2 CD52 SFN FSTL1 ACADS SPOCK2 SHANK3 CLDN3 GALNT12 COL3A1 LAMA4 WTIP COL5A2 BTG1 EBI3 RPLP2 HSPA1A TST XBP1 HLA-DOA RPL19 SRGN
54 ISG20 PPIB RAB27A RPS18 CDC42EP5 BSG SPOCK2 RPL10A TSPAN1 IGFBP7 HADH RPS21 SOX7 PHGR1 URAD IGFBP6 ENHO EDIL3 COL4A1 FYN CSF2RB SPOCK2 JUN CLDN4 DDIT4 CSTA RPL28 PDK1
55 SDC1 HSPA1A GALNT12 RPS6 TXN SFN LTB PTPRC CA2 COLEC12 DSP CD69 LIMS2 S100A6 GALNT5 PODN CALD1 NDUFA4L2 ABCC9 LTB NR4A3 RPL21 PRSS8 CCDC50 TFEC RPS12 GMFG
56 SUB1 FOSB GSN MARCKSL1 UQCRC1 HSD11B2 TIGIT RPL24 SLC3A1 MXRA5 FABP5 BCL11B RASIP1 ERN2 TNFRSF11B COL5A2 TMEM158 RBPMS2 COL14A1 IL2RB KDM6B CALM1 PIGR TMEM258 HCK RPS3A SSR3
57 SEL1L ERLEC1 SMIM22 TXN ACADS AMN LCK CD69 BTNL8 GPNMB ATP8B1 TSC22D3 KANK3 CYP3A5 FCGBP SERPING1 SOX6 CRYAB COL3A1 RCSD1 FTH1 RPS12 GNA11 FOSB NCF2 FAU SEL1L
58 JUN RAB30 ACSS2 IFI27 TST SEMA3B SH3BGRL3 RPS23 TMEM45B RUNX1T1 FAM162A RPS7 CXorf36 TMEM54 STXBP6 CHRDL1 BMP4 CALD1 PDLIM4 CNOT6L RHOH ANXA1 SLC44A4 SELENOS RNF144B RPL29 CD69
59 KRTCAP2 JUN MT1G TMEM176A CHCHD10 CKB ID2 CD3D SULT1A2 ABI3BP HMGB3 ARHGDIB JCAD ANKRD36C IGFBP2 CILP C1R KCNAB1 COL6A1 GPR171 VIM GPR65 CGN PDIA6 SAMHD1 RPS23 FOSB
60 SELENOK TSC22D3 VSIG2 TMEM238 ELF3 SMIM24 ACTB RPS19 MYH14 MXRA8 CCNB2 RPS26 AL583785.1 MAPK3 GALNT3 SERPINE2 GJA1 PLAC9 DKK3 CD69 CD83 BCL11B SERINC2 SEL1L CCL3L1 RPLP1 FOS
61 TMEM258 ELL2 TSPAN13 IMPDH2 PLCE1 GGT6 FYB1 RPL27 HIST1H1C ABCA8 UQCRC2 RPL27A SELP SELENOP AC011523.1 LAMA2 GLP2R GJA4 ASPA HOPX TUBA1B B2M SLC22A18 SERP1 HLA-DPA1 RPS27A HSPA1A
62 H1FX FOS FABP2 RAB25 PCK1 MTRNR2L12 FYN NACA PTPRH ALDH1A3 SQOR RPL6 ADGRL4 DISP2 NEDD4L RERG COL4A1 BGN COL8A1 AC044849.1 CD69 TSC22D3 RHOC MTDH CD36 SCIMP EMP3
63 RGS1 DNAJC3 IFI27 RPL37A SLC25A10 SLC44A4 TRDC CD3G SLC6A8 SFRP4 CDH1 ANXA1 SOX17 AOC1 TTC39A COL6A2 PTCH1 SORBS2 NES XAF1 AREG ATP5F1E LAMB3 ATF5 CD4 RPS18 UBC
64 IGKV1-5 TMEM258 HES6 ELF3 KRTCAP3 DGAT1 BCL11B RPL18A SLC44A4 LSAMP CASP6 RPS14 ADCY4 PLAC8 RAB27A CFH SDC2 CAV2 CALD1 PTMA EXD3 ZFP36L2 C11orf86 KLF2 RTN1 CYBB ISG20
65 HSPA5 NR4A1 ATP2A3 AGR3 CD9 GUCA2B STAT4 SRGN ENTPD8 IGFBP6 PON2 EIF1 TLL1 ATOH1 ERN2 GPC6 PXDN TIMP3 COX4I2 SYTL3 RPS6KA5 CREM EPCAM ERLEC1 PLA2G7 RPS21 CREB3L2
66 IGHV3-23 H1FX NEDD4L ALDH1B1 GAPDH KRT18 RUNX3 RPS4X DSC2 FGF7 TCEA3 RPS28 FAM110D MGLL CKAP4 ANK2 SCARA5 SOD3 ITGA1 AKNA RAC2 LTB AMN CD27 C1orf162 RPL27 ANKRD37
67 PDIA4 PABPC4 WFDC2 GALNT6 NXPE1 ADIRF STK17B EEF1B2 RETSAT OMD LGALS4 LCP1 HSPA12B ABHD17C ALDH1A1 COL1A1 ACTA2 KCNMB1 PDGFRB GIMAP7 GALNT6 RPL23A TMPRSS2 NR4A1 DNASE1L3 MIR29B2CHG DUSP1
68 UBC TMED10 CLDN4 CLDN3 DDAH1 CGN REL MALAT1 FA2H GFRA1 MTCH2 CLEC2D AFAP1L1 LGALS4 CANT1 SVEP1 COL4A2 ANGPTL1 IGFBP5 RGCC CD44 MYL12A CEACAM6 SELENOK CD209 TXNIP SELENOK
69 IGHV3-7 SEL1L GALNT7 KLK1 CISD3 SLC6A8 LAPTM5 RPL3 MIER3 BNC2 HNF4A RPS23 PDE2A P2RX4 SNHG18 SDC2 NEGR1 CAVIN1 PCDH9 GZMM ALOX5AP PFN1 C1QTNF12 IGHV3-74 ADGRE2 CCR7 B2M
70 FOS SEC62 TFF1 HES1 TMEM54 SLC39A5 ARL4C TRBC2 SLC22A18 NUPR1 PLPP2 HLA-A TMEM255B SDCBP2 GSTO2 TGFB3 SERPINF1 PHLDB2 KANK2 CCL4L2 FLT3 RPS7 SPINT1 JUN PHACTR1 RPL24 CITED2
71 IGLC2 DUSP1 TSTA3 PRDX5 SI GOLM1 GPR174 RPL37A MUC12 SLIT3 PYCARD UBA52 ARHGEF15 LINC01559 L1TD1 MGP COL5A1 COX4I2 PMEPA1 MAF NFKBIZ THEMIS SEMA3B IGKJ5 RNF130 RPL14 JUN
72 IGLC3 FRYL TM4SF5 SLC39A5 CLDN3 IFNG RPL29 PRSS8 PLAC9 CD9 RPS16 NOVA2 FUT3 SLC35A1 NNMT AEBP1 IGFBP7 IFITM3 KLRB1 RPL23 PTMA ST14 SEC61G SH2B3 RPL9 BTG2
73 TRAM1 TRPM4 LSM7 SUCLG1 PLCD3 RAC2 RPL14 MUC13 PTGIS PIGR PTMA CCM2L CDC42EP3 ESRP1 BNC2 CFH SBSPON CNN3 GPR65 IDS RPL28 TMEM37 ID3 CD68 RPL3 NFKBIA
74 ANKRD37 SLC44A4 RPL13 AC008397.1 DSC2 GZMH RPS18 SPINT1 SPARC SUCLG1 TXNIP EBF3 SERINC2 FAM3D RGMA CCL13 FXYD1 SFRP1 ARAP2 CCL19 TPT1 CTSA ZFP36L2 ADAP2 MALAT1 PDIA6
75 EMP3 HMGCS2 ITGA6 URAD MUC13 IL32 RPL22 SMPD1 COL5A2 CYC1 RPL10 LHX6 DDR1 SMAD9 PTGFR ECM1 NEXN DLC1 RORA LAPTM5 RPL27A MUC12 H1FX CCR1 JUNB HSP90AA1
76 TP53INP1 LGALS9 KCNN4 DSG2 EPCAM PFN1 RPL5 DUOXA2 CLEC11A SRI FAU HYAL2 EPCAM RAB15 COL6A1 AGT COX7A1 COL4A2 STK17B SGK1 RPL27 CHP2 UFM1 CD86 RPL10A ZFP36L2
77 DDIT4 H1F0 RPL29 IDH1 ELF3 ARHGAP9 CD3E XDH MRC2 CISD3 RPL31 PTPRM DHRS9 CDC42EP5 COL12A1 COL5A2 ITGA7 OLFML2A CKLF LMO4 AC058791.1 HIST1H1C RPL36AL HLA-DQA1 RPS13 DNAJB1
78 SERP1 CLDN3 FAM3D PHGR1 LINC02023 HLA-A RPS15 SECTM1 SERPINE2 GPX2 RPS6 LMCD1 SYTL2 FGFR2 RUNX1T1 NNMT GLDN FIBIN RNF213 S100A4 APBB1IP IGSF9 SSR2 MAFB LAPTM5 TRAM1
79 BTG2 PADI2 KCNQ1 SULT1B1 MYH14 PDE4D RPL7 LRRC1 FAP SIAE AC058791.1 THBD GPA33 MT1G ALDH1A3 NID1 HES4 MXRA8 BAZ1A NR4A2 RPL37 HSD3B2 FOS LY86 SWAP70 IGLC2
80 SEC61G RASD1 PLPP2 TCEA3 S100A6 ZFP36L2 RPL36 TMEM54 PRRX1 ALDH1A1 ZC3HAV1 GPR146 MCF2L GPX2 CTGF CFD RBPMS PAPPA NR4A2 AC084033.3 HOPX KRT18 AREG KCTD12 RPL38 IGKV4-1
81 PDIA4 AC103702.2 PPP1R1B RAB25 MGLL MSN RGCC TJP3 COL12A1 TSPAN6 RPSA ENG CDHR5 EIF4EBP1 HTRA3 IGFBP7 WFDC1 SORBS1 PPP1R18 DUSP6 IL32 LGALS4 EZR CXCL2 RPS16 PPIB
82 NFKBIA DSP RPLP0 ETHE1 MT1E TNFRSF9 RPSA MAL2 ABCA6 ATP1B1 GIMAP7 EXOC3L2 SLC44A4 KLF5 SPARC CTSK LTBP1 C1R ARPC2 ARHGAP18 SKAP1 CLDN3 HSPA1B SLAMF8 POU2F2 IGHV3-7
83 DNAJB1 QSOX1 TMSB10 S100A16 HNF4A DNAJA1 ZNF331 IFI27 A2M VDAC1 RPL10A FAM69B LIPH IL13RA1 CDH11 PLAU ITGA8 RBP1 SPOCK2 DBI CLEC2D C19orf33 IGLV3-1 GPR34 RPS6 H1FX
84 HSP90AA1 SNORC ADGRG1 SLC44A4 ACADS RASGRP1 GPR183 SERINC2 PHLDA3 LIMA1 DDX5 NOS3 LMO7 ASRGL1 HSD11B1 ROBO1 MAP2 NCAM1 CELF2 LAPTM4A SLA FLNB HSPA1A AOAH SELL JUND
85 IER2 GALNT3 NBEAL2 AGR3 ST14 AC058791.1 TNFAIP3 AOC1 PDE5A CLDN3 RPL24 APLNR CEACAM1 SLC39A11 AEBP1 FHL1 A2M NDUFA4L2 CTLA4 ATP5F1E RPL34 PPP1R14D KCNQ1OT1 CFP RPS7 IGLL5
86 GSE1 RPS5 KRT18 DHRS9 MALAT1 RPL18 SLC20A1 AEBP1 BCL2L15 RPL39 DOC2B PRSS8 ATP8B1 GAS1 LAMB1 HSPB6 COL6A2 MSN CST7 TOMM7 TSPAN8 SIRPA DNAJA1 HSPA5
87 HPCAL1 RPL13A ERN2 ABCC3 ANXA1 ARL4C LINC01559 HTRA1 ETFA ZFP36L2 CAV2 AGR3 MUC4 ABCA8 LOX PPP1R12B TFPI IKZF1 PTMA EIF1 TJP3 CD93 RPL10 IGKV3-20
88 ESRP1 ICA1 MUC12 PPARG AC044849.1 DNAJA1 SMIM22 CYBRD1 AKR7A3 JUNB IL3RA GALNT5 CRACR2B THBS2 VCAN ITIH5 EHD2 PFN1 RASGEF1B LAPTM5 BSG TREM2 RPS5 IGHV3-23
89 URAD ENC1 CKMT1B AHCYL2 RARRES3 CD48 EPCAM EPHA3 SELENBP1 B2M GPRC5B GUCA2B PRUNE2 GPNMB CTGF CPE NOTCH3 ACTB SMIM1 HLA-E LGALS3 OGFRL1 RPL8 IGLC3
90 S100A6 RPS19 COX5B CA12 MYL12A RPS5 HK2 MMP23B ATP5F1B RPS4X CRIP2 PIGR LGALS4 DIO2 TAGLN AOC3 COL5A1 MLLT6 ALOX5 IL2RB SMPDL3A FCGR3A IGHG1
91 S100A14 CD24 ATP5ME AKR1C3 B2M RPL35 VILL NFIA FAM3D SH3BGRL3 STC1 SMIM14 ZG16 LSAMP RBP1 TMEM47 CTNNAL1 CYFIP2 AKAP12 LCP2 ELF3 LILRB5 RPS25
92 PLA2G10 SLPI SATB2 GNA11 ETS1 NR4A2 ST14 CCL11 FABP2 RPL7 SH2D3C TCF7L2 TSTA3 CLEC11A LUM SERPINI1 NOV PBDC1 BTK KLRD1 GPRC5A DAPK1 SMIM14
93 TPM1 RPL28 CHP2 SERINC2 CCL4L2 ZFP36L2 DUOX2 EFEMP1 TMEM54 PFDN5 CAV1 B3GALT5 GATA6 CLMP FAT4 PLS3 FEZ1 MALAT1 RPS8 RPS21 CAMK2N1 FCER1A RIPOR2
94 SOX9 TSTA3 PLPP2 SLC22A18 TSC22D3 PFDN5 FXYD3 NNMT RBM47 RPL22 GALNT18 RAB27A CMTM8 FNDC1 AC078864.2 CRIP2 LAMA4 ZFP36L2 RGS2 HLA-C S100A6 RAB31 HLA-DQB1
95 S100P RPL8 NDUFV1 ITM2C ITGAL ITK ABCB1 MFAP4 NIPAL1 RPL23 DYSF NEDD4L SMIM14 FAP CSF1 NPY1R ARHGEF17 CREM TNFAIP3 RPL19 TPRN HLA-DQA2 TOMM7
96 RASSF7 RPS15 HNF4A SLC4A4 CORO1A FAU APPL2 GAS1 KRT19 RPL14 RAPGEF4 TPRN S100A14 VIPR2 A2M EBF1 ACTA2 CLEC2B H3F3B CKLF C10orf99 NLRP3 RPS10
97 SMIM14 MECOM ESRP1 TCF7L2 CNOT6L RPS11 TMEM171 PMP22 ANXA4 NACA IL33 TUBB2A KRT18 APOD COL12A1 SORBS1 BGN IKZF3 BEX4 RPL38 VILL LAPTM5 RPL18
98 KCNK6 VSIG10 CA2 MT1M SKAP1 TMSB4X GDPD3 IFITM3 SNORC RPS18 LMO2 DDX60 KLF4 TSHZ2 MYL9 SLIT3 ENDOD1 MYL12A RPS7 RPS26 CA1 MMP9 UBA52
99 ABLIM1 EPCAM SMIM22 TDP2 RPS27 RPL12 CDH1 FXYD1 GSTA1 RPS8 PLXND1 VIPR1 DLL1 FGF7 FSTL1 FOXS1 EDNRA TNFRSF18 TMEM154 RPL32 ITM2C MSR1 ZNF331
100 GFPT1 RPS16 PYCARD CA4 GIMAP7 EIF1 BMP3 GREM1 ATP5MC3 RPL5 MCTP1 KLF4 GFPT1 CALD1 PPP1R14A MARK1 RARRES2 APBB1IP RPL10 RPL30 MUC13 TNFSF13B RPL12

separation of epithelial, stromal and immune cells

Cell split