knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p017n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p017n"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p017n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5065 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3030 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 3 4 5 6 7 8 9
1 MZB1 MS4A1 CLCA4 MS4A12 TFF1 CA1 DERL3 OTOP2 IGFBP7 ITLN1 GZMB CLCA4 UGT2A3 CLCA4 RETNLB SH2D6 CXCL8 KLRB1 IL7R GZMK ITLN1 IL7R LEFTY1 IL7R GZMK
2 TNFRSF17 VPREB3 EMP1 SLC51B MUC2 SELENBP1 TNFRSF17 BEST4 LUM CLCA1 CD160 AQP8 SELENBP1 AQP8 AC005833.1 AZGP1 C1QA LINC01871 KLRB1 NKG7 CLCA1 FYB1 ADH1C FYB1 CCL5
3 IGHA2 HLA-DRA C11orf86 CDKN2B-AS1 GPR153 KRT19 MZB1 CA7 DCN SPINK4 TRDC EMP1 PLCE1 GUCA2B WFDC2 TRPM5 C1QB IL7R S100A4 CCL4 SPINK4 CD3D OLFM4 KLRB1 CCL4
4 DERL3 TNFRSF13C AQP8 CEACAM7 ZG16 SLC26A3 IGHA2 DMBT1 COL1A2 KLK1 KIR2DL4 GUCA2B MIR194-2HG TRIM31 FOXA3 HPGDS IL1B PARP8 LINC01871 GZMA MUC2 LTB GPX2 ICOS GZMA
5 JCHAIN BANK1 TRIM31 AKR1B10 FER1L6 SLC26A2 FKBP11 MSLN COL3A1 REP15 GNLY SLC26A3 SLC26A2 GUCA2A KIAA1324 BMX C1QC TXK CD3D CCL5 REP15 RPS27A PPP1R1B TRAC CST7
6 IGHA1 HLA-DPB1 CDA SLC26A3 S100P ADIRF LY96 SPIB FBLN1 RNASE1 KLRD1 SLC9A3 CD24 SELENOP MB SH2D7 MS4A6A GNLY TNFAIP3 CST7 KLK1 TRAC IGFBP2 LTB GZMM
7 IGKJ5 HLA-DRB5 GUCA2B CA1 RAB3B FABP1 SEC11C ADCY5 SPARCL1 MUC2 PRF1 MUC12 UGT2B17 CEACAM7 ANXA13 HTR3E STAB1 CCL5 CCL5 DUSP2 ST6GALNAC1 RPL32 PLA2G2A CD3D NKG7
8 FKBP11 HLA-DPA1 CA4 TMIGD1 SYT7 CES2 POU2AF1 HES4 CCDC80 ST6GALNAC1 HOPX GUCA2A GOLM1 GPRC5A MYRIP B4GALNT4 CLEC10A CD7 ANXA1 CCL4L2 RETNLB RPS3A MGST2 GPR183 CXCR4
9 SEC11C PAX5 SECTM1 KRT20 TBX10 MS4A12 CD79A MT1H IGFBP6 REG4 NKG7 CEACAM7 PIGR SLC26A3 RAB15 GNG13 FPR3 LCP2 CD3E CRTAM TFF3 RPL34 PKP2 SRGN DUSP2
10 UBE2J1 CD83 ABCG2 GUCA2A GSN CD24 AC104024.1 MEIS1 C1R SPINK1 GZMA GPRC5A AC103702.2 EMP1 ITLN1 POU2F3 CSF1R CD3E CD52 CMC1 FCGBP RPL21 DDAH1 TNFAIP3 HCST
11 GNG7 CD22 CEACAM7 SLC9A3 SMIM5 PHGR1 PRDX4 OTOP3 COL6A2 SPDEF XCL2 MEP1A NXPE4 MUC12 SPINK4 HCK P2RY13 CD3D CD2 CD8A SPINK1 CD2 CD24 LEF1 PTPRC
12 CD79A CD79A GPRC5A TMEM54 ANKRD36C CA2 EAF2 CDK18 C1S TFF3 TMIGD2 SELENOP ERN2 SLC9A3 CREB3L1 OGDHL CLEC7A NKG7 HCST TNF RAP1GAP RPS27 MLEC CCR7 CD3E
13 SSR4 HLA-DQB1 CEACAM6 AQP8 SYTL2 ANPEP JCHAIN CA4 COL1A1 AGR2 CCL5 DUOX2 KLF5 ANPEP GDF15 COL27A1 MPEG1 GPR65 CXCR4 PTPRC ANO7 RPL11 GOLM1 CD3G IL7R
14 EAF2 TCL1A HPGD PRSS3 FCGBP KRT8 LINC02362 MT1G TIMP3 HEPACAM2 TYROBP CEACAM1 MUC4 TMEM37 RAP1GAP PSTPIP2 MNDA XCL2 GPR171 HCST WFDC2 RPL37 FABP5 RORA CD3D
15 PRDX4 IGHM CLDN23 ADIRF TFF3 CKB MEI1 C2orf54 ADH1B SERPINA1 TRGC1 ANPEP CDH17 CA4 DLL1 PTGS1 AC020656.1 HOPX TRAC GZMM ERN2 RPL30 PYCARD LDHB CD3G
16 SPCS2 CD79B OASL KRT19 RASEF ETHE1 CCR10 UNC5C SPARC BEST2 XCL1 CDHR5 LIMA1 PRSS8 GNE AVIL CD163 PTPRC SRGN CXCR4 SLC12A2 RPL13 TXN BCL11B CD2
17 IGKC LINC01781 PRAP1 FABP1 SCNN1A TMEM54 IGHA1 MT1M COL6A1 ATOH1 CST7 TRIM31 CA1 MEP1A ARFGEF3 KIT OLR1 CD2 PTPRC IFNG GALNT8 RPS6 KRTCAP3 CCR6 TRBC1
18 TIMP1 LY86 GUCA2A SFN TPSG1 MT1M SDF2L1 MT1F EFEMP1 FCGBP CCL4 TSPAN1 XIST MS4A12 RNASE1 IL17RB SLC8A1 STK4 LTB CD8B SPDEF RPS12 EPHB2 RPS3A RPS27
19 XBP1 BLK SLC9A3 CA2 MLPH FXYD3 ANKRD28 NEURL1 SERPING1 CDC42EP5 HCST ABCG2 CENPF SFN ATOH1 ALOX5 CPVL SPRY1 TRBC2 CD3D RNASE1 SRGN AGR2 TRBC1 BTG1
20 SPAG4 CD74 SMPDL3A ETHE1 TM4SF5 MT1G IGKJ5 MT1X COL6A3 WFDC2 IL2RB SDCBP2 SECTM1 HEPACAM2 HTR3C AIF1 KLRD1 CD3G EOMES HEPACAM2 RPL27 MAOA PTPRC SRGN
21 ANKRD28 IGHD CEACAM1 SELENBP1 BCAS1 LGALS3 MANF PCSK1N PLAC9 ZG16 CD7 MS4A12 PRSS3 REP15 CD300LF SIGLEC1 ARL4C CD69 CD3E AGR2 RPS13 SUCLG1 RPL34 ZFP36L2
22 TENT5C HLA-DQA1 MUC12 CEACAM1 SYTL5 CDHR5 UBE2J1 FRMD1 FBN1 TPSG1 TRGC2 MIER3 TSPAN1 ANO1 LRMP CD209 CD3G SPOCK2 CD3G CDC42EP5 RPS15A KLF5 RPL37 CRTAM
23 FCRL5 CD37 TMEM37 KRT8 SMIM6 TRPM6 SSR3 MT2A COL14A1 MLPH KLRF1 MISP PLAC8 SPINK1 PAK3 LILRB5 S100A4 RORA SRGN CREB3L1 RPL38 UGT2B17 FXYD5 RPS29
24 SDF2L1 IRF8 SLC26A3 FXYD3 REP15 C1QTNF12 GNG7 CTSE PCOLCE RAP1GAP LINC01871 ENTPD8 SDCBP2 SLC12A2 KCNQ4 MS4A4A SRGN TRBC1 TNFSF9 HPCAL1 RPS20 PIGR RPL32 CD52
25 SSR3 HLA-DRB1 MS4A12 PHGR1 SPDEF LGALS4 SLAMF7 MT1E CALD1 RETNLB FCER1G PLAC8 SLC6A8 ST6GALNAC1 NCMAP IGSF6 HCST TMSB4X GADD45B ATP2C2 RPS21 NUPR1 RPS27A RPL30
26 POU2AF1 MARCH1 PKIB FLNB TSPAN1 CEACAM7 CRELD2 NOTCH2 PMP22 FAM3D CCL4L2 SECTM1 CEACAM1 LINC01971 PLCG2 CD36 TNFAIP3 GPR65 ITGB2 MLPH RPL28 MYB TRBC2 CMC1
27 HERPUD1 FCRLA SELENOP CKB GPRIN2 GPT BASP1 NBPF14 MFGE8 SNORC CTSW CD177 MISP OVOL1 TREH LILRB2 CD247 ARL4C A2M-AS1 ZG16 RPL9 LCN2 RPL30 CD8A
28 SPCS1 POU2F2 RFK MISP ENTPD8 PIGR SPCS2 MYOM1 MMP2 LGALS4 KLRB1 TMIGD1 RETSAT KLK1 C11orf53 ADAP2 CST7 FYB1 TMSB4X MUC4 RPL10 CYC1 RPS15A TMSB4X
29 DUSP5 LAPTM5 SDCBP2 PLCD3 SPATS2L ITPKA SPAG4 SCIN FSTL1 WNK4 PTPN22 PTPRR PKIB TPSG1 CCSER1 S100A9 RORA BTG1 BTG1 GALNT5 RPLP2 ARSE RPS12 LYAR
30 PRDM1 CD19 PPP1R14D SULT1A1 MCF2L MVP IGLV3-1 LCN15 SCARA5 HSD11B2 CD8A IFI27 LAMA3 TSPAN13 AFAP1L2 F13A1 LTB ZFP36L2 RPS27 TPM1 KLRB1 TMEM238 CD3E JUNB
31 TNFRSF18 HLA-DMA MISP BSG IFI27 TPRN LGALS1 GUCA2A PDGFRA CAPN9 GPR65 SLC17A4 ST14 CLCA1 ADGRG6 VSIG4 TRBC2 ARHGDIB TRBC1 NEURL1 RPS29 FERMT1 RPS27 LCP1
32 HSP90B1 LINC01857 MEP1A MT1M CDC42EP3 DHRS11 NUCB2 CKB HTRA1 TPM1 ITGA1 CA4 SULT1A2 BEST2 KLK11 C5AR1 RGCC RPS19 DNAJA1 SERPINA1 RPS25 ATP5MC1 JUNB DDX5
33 SEC61B HLA-DMB SLC1A1 CES2 FAM3D C3orf85 TXNDC15 KRT20 TFPI MB GZMH RFK CDA HES6 TAS1R3 RTN1 CD52 RPS27A MALAT1 KIAA1324 RPL6 UGT2A3 SARAF RPLP2
34 SPCS3 AFF3 PRSS3 TST CD177 SLC51B AC104699.1 LYPD8 AEBP1 GNE CLEC2B CA2 HPGD SERPINA1 GFI1B TYROBP IL2RB RPS12 JUNB BEST2 RPL19 AKR1C3 CXCR4 RUNX3
35 CCR10 CYBB ALDOB LGALS3 QSOX1 FLNB LINC01480 ID1 GNG11 VSIG2 GZMM PRAP1 IFI27 IGFBP2 LIPG SLC37A2 GPR171 LCP1 RPS29 FAM3D RPS19 PHB2 RPL11 RPS15A
36 RAB30 EBF1 EGLN3 HHLA2 VSIG2 SLC22A18 MIR29B2CHG HRCT1 PTN KLF4 GPR171 ABCB1 TMIGD1 FMOD LIMCH1 FCN1 CNOT6L RPLP1 TIGIT L1TD1 RPS14 S100A16 RPL21 ANXA1
37 IRF4 CD1C SLC6A8 SRI SERPINA1 PLCD3 PDIA6 AOC1 NNMT FMOD CD3E MTRNR2L12 CDHR5 SPDEF FRY FCER1A AC004687.1 TSC22D3 PLEK HES6 RPL10A ATP5MC3 TRAT1 RPL23A
38 CD27 SCIMP PLOD2 CHP1 KLK1 S100A6 SSR4 TMSB10 SLIT3 KRT18 LCP1 SFN HIST1H1C L1TD1 MATK CSTA LCP1 RPL34 RPS15A WNK4 RPL35A TMSB10 RPS13 RPS12
39 SLAMF7 CD52 HSD17B2 CA4 MINPP1 BSG HSP90B1 GUCY2C LAMA4 AC005833.1 TMSB4X HPGD CTSA CKAP4 GRK5 MRC1 EMB RPL27 ZFP36L2 ATOH1 RPL23 COX5A TPT1 ARHGDIB
40 IGLV3-1 BTG1 ANPEP PKIB TCF7L2 TSPAN8 DUSP5 GNPTAB MXRA8 AGR3 ALOX5AP CTSA RHOC GMDS DPYSL3 SPI1 UTRN RPS15A NR4A2 CRACR2B RPS28 PRDX5 RPS29 EIF1
41 MANF SWAP70 CDHR2 GIPC1 DST MT1E SPCS3 CA2 FOXF1 KIAA1324 CD52 ST14 PLOD2 DNAJC12 RGS13 ITGAM ALOX5AP RPS20 HLA-E GSE1 TRBC2 TNFRSF11A UBA52 RPL28
42 MANEA HLA-DQA2 SFN ANPEP FXYD3 CDKN2B-AS1 FCRL5 SLC20A1 CAVIN3 SLC12A2 CD247 TMEM37 BMP3 ATF3 PROX1 CYBB RGS1 RPL30 DNAJB1 IGFBP2 RPSA TCEA3 PASK RPS7
43 FKBP2 RALGPS2 PLAC8 DHRS11 RFLNA UQCRQ FKBP2 TMEM176A DPT ERI3 SRGN CEACAM6 ABCG2 MLPH FGFR4 RGS18 HERC1 RPS27 H3F3B ELF3 CD3E IMPDH2 RPL19 RPS27A
44 CYBA CXCR4 HIST1H1C SMIM22 CEACAM6 LGALS2 SPCS1 SDCBP2 EMILIN1 MUC4 LCK TRPM6 CFDP1 REG4 PTPN18 C3AR1 MED31 TPT1 GZMH KLF4 RPL3 TSPAN8 CNOT6L TNF
45 CRELD2 BCL2A1 PTPRR MT1H KRT20 TST MANEA CHP2 SDC2 IL1R2 PTPRC PRSS8 PRAP1 IL13RA1 ALOX5AP FOLR2 TIPARP RPL6 B2M FRYL CD3G CASP6 SPOCK2 TSC22D3
46 TPST2 LYN TMIGD1 SLC22A18 LINC01559 KRT20 CD27 TTC39B THY1 RASD1 CORO1A FABP1 CGN URAD SPIB MS4A7 AREG RPL32 COTL1 TCEA3 RPL7 MRPS35 CD2 DNAJA1
47 LGALS1 BCAS4 TMEM45B TPRN SELENOP C10orf99 HERPUD1 CEACAM1 NEGR1 SLC39A11 TNFAIP3 GPA33 CLDN23 GALNT8 RASSF6 GFRA2 SARAF CD52 SNORC PTPRC AGR3 ARHGDIB RPS20
48 CREB3L2 BASP1 TP53INP2 C1QTNF12 MUC4 UGT2B17 SEC61B TMEM176B ABI3BP CRACR2B RAC2 RHOC SLC15A1 FRZB IFI6 RNASE6 BCL11B CLEC2B GMDS RPS16 SPINK1 RPL9 TRBC2
49 PABPC4 MEF2C SMPD1 C3orf85 FSIP2 MISP HSPA13 C10orf99 ECM1 TCEA3 ARPC2 SLC6A8 C11orf86 FABP2 PIK3CG ITGAX RPS3A KLF2 SYTL2 RPL5 ATP5PB RPLP1 CD48
50 PDIA6 RHOH RHOC TSPAN8 CLDN4 PRSS3 CSF2RB FABP1 CYGB NEURL1 GPR174 SMPDL3A CA2 GNPNAT1 ACSL4 NCF2 RPLP2 HLA-A KRT18 BTG1 GSTP1 AC058791.1 BCL11B
51 PIM2 RPS20 TMPRSS2 TP53I3 MLLT3 CHCHD10 ERLEC1 KRT19 VCAN HID1 RGS1 TMPRSS2 SMPDL3A KDELR3 LYZ CD93 CD48 CD2 LGALS4 RPL23A GAPDH RPS6 RPS3
52 SEL1L RPS23 SULT1A2 S100A6 SMIM14 SULT1B1 ALG5 CDHR2 COL5A2 ANO7 RUNX3 PRSS3 CD177 DACH1 BIK FGL2 SLA APOBEC3G URAD CXCR4 RPS2 CD69 CNOT6L
53 VIM NR4A2 CFDP1 PIGR WNK4 HSD11B2 RAB30 KRT8 SERPINF1 RARRES1 CD69 HHLA2 CDHR2 RARRES1 SPTLC2 LYVE1 RPSA RUNX3 HSD11B2 CCR7 DMAC1 RPLP2 MALAT1
54 MEI1 RPS27 TSPAN1 CD24 CREB3L1 SLC9A3 MEF2C SAMHD1 ADAMTS1 URAD PIK3R1 CDHR2 RFK HPCAL1 DKK3 MSR1 RPL23A LYAR RASD1 RPL13A SATB2 RPS20 HLA-C
55 CD38 TCF4 PRSS8 IFI27 CAPN9 SMIM22 IGLL5 GPA33 LHFPL6 ELF3 REL PI3 CEACAM6 ALDH1A1 PLEKHB1 PLA2G7 UBA52 TRBC2 NEDD4L S100A4 GSTA1 BTG1 CD69
56 SUB1 RASGEF1B MIER3 PLS1 TCIM TSPAN1 A1BG EFNA1 ABCA8 GMDS SPRY1 CGN HSD17B2 GALNT5 MYO1B CD86 RPL38 CD69 CBFA2T2 RPL12 CD9 ARL4C HLA-E
57 PDK1 RPS11 SLC17A4 SULT1A2 MGLL CHP2 SRPRB LGALS3 A2M TSPAN13 ACTB MIR194-2HG TMPRSS2 TMEM61 ZFHX3 TGFBI RPL5 ARL4C TSTA3 CD48 RAB25 FYN RPL38
58 TP53INP1 SMAP2 SLC51B CHP2 RAB27A TP53I3 DNAJC3 FXYD3 C3 IGFBP2 CD3D RETSAT SLC17A4 GATA6 FURIN CFP RPS7 EIF1 SH3PXD2A RPLP1 CDX1 RPL23 RPS25
59 A1BG REL SCNN1B PLAC8 MUC13 GIPC1 TIMP1 A1CF PLAT H1F0 CKLF NEAT1 PPARD CRACR2A GRASP LYZ RGCC DDX5 SCNN1A RPL22 TRABD2A RGCC GIMAP7
60 ICAM2 GRASP IFI27 HSD17B2 GDPD3 S100A14 PLPP5 GOLM1 CXCL14 SLC9A3R2 ARHGDIB DUOXA2 ACAA2 MUC2 ANXA13 PTAFR RPL21 TSC22D3 GALNT12 TOMM7 SNHG19 RPL27 ARL4C
61 SPINK2 RPL21 MDK C10orf99 DHRS9 ACADS IGKC ADRA2A PCDH18 FOXA3 CD53 LAMA3 LAMB3 SNORC ITPR2 C5AR2 RPL19 RPS25 VSIG2 RPS23 PEBP1 ZNF331 RPL21
62 TRAM1 PARP15 RHOF C11orf86 NEDD4L AQP8 SELENOS ECE1 IGFBP5 CREB3L1 TRBC2 DST TRPM6 STXBP6 FES KCTD12 RPS6 GIMAP7 ATP2A3 RPS8 S100A14 RPS28 B2M
63 KLHL6 RPSA LAMB3 DHRS9 LYPD8 MYH14 LMAN1 HMGCS2 SFRP1 ALDH1A1 SLA CLDN4 C1orf115 ERGIC1 MAP7 LST1 RPL37 RPL30 TCIM RPL39 TSPO RPL35A RPS21
64 IGKV3-20 RPL32 COL17A1 TSPAN1 CKB AHCYL2 XBP1 RNF186 CFH FABP2 LSP1 BMP3 SMPD1 ETS2 HOTAIRM1 PTGS2 MSN GPR174 ETS2 TPT1 PLPP2 CREM RPS13
65 H1FX RPS8 CDHR5 CDHR5 SDCBP2 COX5B TENT5C SRI FN1 CHCHD10 MSN DSC2 MDK AGR2 SOX9 TFEC PFDN5 RPL38 LGALS9 TXNIP MYC RPS19 RPL27
66 HSPA13 NCF1 LAMA3 S100A14 AGR2 PRR15 JSRP1 NSD2 TPM2 MCF2L CD96 MUC13 CLDN4 NEDD4L HEPACAM2 TLR2 RPL11 UBE2S XIST RPS3 NXPE4 RPL38 RPL34
67 SELENOM RPL37 CEACAM5 GUCA2B MICAL1 AKR1C3 PRDM1 CEACAM6 CRYAB NEDD4L ARHGAP9 LSR MIER3 TSTA3 ATP2A3 MMP9 RPS25 TXNIP SOX4 RPL35 GPR160 RPS21 TNFAIP3
68 IGHV4-59 FCMR ACAA2 CD177 CAMK2N1 SLC4A4 PPIB CRYL1 COL4A1 GALNT5 EVL LAMB3 FABP1 RAB27A IL13RA1 GPR34 RPS13 EMP3 MTRNR2L12 RPL24 MT1E RPS14 RPL31
69 IGLL5 FAU CD177 ACAA2 TPM1 AKR1B10 SRM PHGR1 MRC2 ERN2 LCP2 LINC02023 ASS1 GALNT7 FYB1 CLEC4E RPL35A IER2 PRDX5 RPS7 RPL8 RPL13 GIMAP4
70 LY96 RPS13 EPS8 LGALS4 PLAC8 AMN SPINK2 MTRNR2L12 CTSK DLL1 NR4A2 TRANK1 FCGRT TMEM30B MARCKSL1 LILRB4 RPL13 RPS20 IER3 UBA52 PDHA1 TOMM7 RPL35A
71 C16orf54 CD53 MUC13 MT1E PHGR1 CLDN3 ST6GALNAC4 CES3 TMEM47 QSOX1 IL32 SCNN1B PPP1R14D PPP1R1B IGSF3 IRAK3 RPL9 RPLP2 RPS4X TIMM13 RPS8 RPL13
72 TXNDC15 SELL TM4SF1 UQCRQ PLA2G10 CDKN2B PDIA4 ATP1B1 COX7A1 HPCAL1 SAMSN1 EPCAM SERINC2 AGR3 PTPRJ SIRPA LCP2 RPL23A RPS10 TCEAL9 GMFG RPL9
73 MEF2C MIR29B2CHG CTSA RHOC ELF3 SULT1A1 CD38 MUC13 ITIH5 GALNT3 FYN HIST1H1C LRRC1 GPX2 ABHD2 RNF144B CELF2 XCL2 RPS5 RPS18 CD52 ITGB2
74 NUCB2 RPL13A MAL2 TNNC2 FOXA3 MT2A SPATS2 CCND1 BGN SCNN1A CRTAM PDCD6IP LMO7 HBEGF DEFB1 HLA-DMB CREM LCK TRBC1 SLC25A6 RPL23A RPL27A
75 ELL2 GPR183 RETSAT S100A10 DDX60 LIMA1 AC009404.1 SLC22A18 C11orf96 RAB27A TRAC CDH1 HHLA2 ESRP1 BCAM SLC15A3 RPL10 RPL28 PFDN5 SNORC S100A4 RPS15
76 BCL2L11 RPL27 AQP7 PAPSS2 CDC42EP5 SRI DNAJC1 VIPR1 AKAP12 ATP2A3 IFNG PKIB KRT20 GALNT12 CNN3 LILRB3 RPL28 RPS7 EEF1B2 GGH RPL5 TRAC
77 PPIB RPL11 FCGRT PRDX6 KRT18 PAPSS2 ICAM2 C1orf21 CYBRD1 SMIM22 DUSP2 SMPD1 MUC13 AP002498.1 TPM1 CCR1 CKLF SRSF2 RPL27A NFIB RPL10 RPS28
78 TSC22D3 RPS5 SERINC2 MT1G CCDC68 SERINC2 TNFRSF18 TDP2 LAMC1 GALNT7 ZFP36 C11orf86 C19orf33 TCEA3 COL9A3 FCGR3A CLEC2D RPS12 BCL11B RARRES2 EEF1B2 HLA-A
79 EVI2B RIPOR2 DHRS9 SLC6A8 LGALS3 C19orf33 SUB1 CEACAM7 ISLR PLXDC2 SLFN5 MAL2 PI3 SOX9 PBXIP1 MAFB PIP4K2A FYB1 FXYD5 SLC9A2 RPS10 RPL6
80 TMEM258 RPL18A CDH1 SLC26A2 TP53INP2 VDR TMEM258 MYH14 OGN FRYL CD3G HSD17B2 EPCAM GLUL KRT18 A2M EVL RPL27 EIF1 ATP5F1A CD40LG RPL5
81 IGKV4-1 KLF2 CGN PRR15 CDHR5 IFI27 CLPTM1L PLEKHG6 TNXB GALNT12 SOCS1 ASS1 FXYD3 KLF4 VAV1 FGR AC026979.2 IL7R EEF1A1 SNX7 RPL39 RPL13A
82 KRTCAP2 RPS7 TRPM6 KRT18 TRANK1 SLC39A5 IRF4 S100A6 MFAP4 GLUL PFN1 CFDP1 RHOF DDAH1 PPP1R1B HLA-DOA FYN SON RPS18 C15orf48 RPL6 S100A4
83 MIR29B2CHG ZNF331 KRT20 CLCN2 ERN2 KRT18 TRAM1 CDHR5 COL5A1 TCIM CREM AOC1 PHGR1 KCTD3 ACTN1 LMO2 RPS29 BTG2 FAU SELENBP1 RPS16 RPSA
84 IGLC2 RPL19 CA2 SLC17A4 BEST2 S100A10 SEL1L EPCAM NID1 S100A6 PTMA PIGR OASL MBOAT2 SKAP2 CCL3L1 STK17B TUBA4A RPL4 PLCB4 GLIPR1 RGCC
85 ALG5 ORAI2 ST14 SDCBP2 DDR1 AOC1 PABPC4 DSC2 GULP1 KRT8 TIGIT MXI1 TJP3 CAPN9 FHDC1 MARCH1 RPL23 CD48 RPS26 YBX3 RPL28 PTMA
86 BST2 RPL23A CLDN4 CTSA KLF4 ATP5F1D GMPPB FLNB MXRA5 CLDN3 GZMK FXYD3 LGALS3BP TFF3 TMEM176A CD1E JUNB SRSF7 RORA MT1G YPEL5 TXNIP
87 SDC1 KDM6B SLC3A1 MUC12 S100A6 ZBTB7B VIM GRN BICC1 DOPEY2 ID2 TMEM54 MYH14 ZNF703 LUC7L3 CX3CR1 DNAJA1 ITGAL GPR183 PRDX3 RPL7 H3F3B
88 SELENOS RPL23 C1orf115 SERINC2 LGALS9B PKIB PIM2 S100A10 NR2F1 ATF3 CALM1 BSG GPA33 PPIC PLPP2 CD302 DDX5 HLA-C RPS2 ATP8B1 RPS7 RPS14
89 PDIA4 RPL5 GPA33 MEP1A TMEM54 GPA33 CNPY2 CARD16 GPC6 IER3 ZFP36L2 PHGR1 ENTPD8 GALNT3 ASMTL FCER1G GMFG HSP90AB1 NACA NDUFAB1 CD28 RPS23
90 SEC62 RPLP2 MYH14 CHMP2A PARM1 UQCRC1 SELENOM GOLIM4 COL12A1 PPDPF EMB LMO7 COL17A1 EGR1 AL591895.1 CXCL2 ACTB CALM1 CD52 CHPT1 RPL22 CALM1
91 FTL RPS3A EPCAM MT2A LGALS4 ELOB CYBA BSG CAVIN1 COX5B APBB1IP JUP DHRS9 KLF5 TET2 IL1RN RPL10A RPL27A NAP1L1 EMP2 RPS4X RPS19
92 FBXW7 RPL34 HHLA2 MYH14 TMC5 GNA11 CISD2 GMNN RUNX1T1 XBP1 GIMAP7 KRT20 SRI CRACR2B SNX9 CD4 ZNF331 RASGRP1 RPL14 FAM171A1 RPL10A PFDN5
93 UFM1 EZR SLC15A1 COX5B CYP3A5 TJP3 OSTC TMEM236 PROCR TSTA3 DOCK10 DGAT1 NEAT1 EIF4EBP1 SMTN GAS7 RPS23 CD81 RPS15 HSPD1 RPL3 PIK3R1
94 SRM LTB ABCB1 GPA33 ST6GALNAC1 BICDL2 PDK1 ABCC3 RBMS3 PPIC HLA-E APLP2 TMEM54 ANO7 FAXDC2 ICAM1 EEF1A1 RAC2 RGCC UGDH RPSA CYTIP
95 LMAN1 RPS6 ENTPD8 PPP1R14D NAAA NDUFB7 ELL2 NXPE1 NOVA1 NANS PIP4K2A SERINC2 JUP NEURL1 RNF43 RNF130 PDE4D PFN1 ARHGDIB PAFAH1B3 NACA ETS1
96 HSPA5 RPS28 DSC2 CLDN3 DUSP8 PLCE1 HSPA5 ACSF2 MYL9 S100A14 APOBEC3G MDK CLDN3 PER2 HOXA3 NLRP3 TOMM7 RPS27A RPS11 LGALS2 TMSB4X KLF2
97 REEP5 PTMA FABP1 MVP ATP9A SLC44A4 IGKV4-1 ITM2C FBLN2 DISP2 LAPTM5 CES2 SLC44A4 CDC42EP5 PTPN6 TNFSF13B EIF1 TAGAP RPL37A MTCH2 RPS23 CLEC2B
98 RGS1 RPL35A TNFRSF21 AKR1C3 EPCAM CSTB TMEM107 CAMK2N1 PRELP IGFBP4 CLEC2D TSPAN8 TP53INP2 TM9SF3 CD14 MMP12 EEF1B2 GIMAP4 RPS9 MPC2 EIF1 NR4A2
99 DNAJC3 NACA AOC1 AOC1 IL1R2 MAOA CXorf21 VIL1 FHL1 IL13RA1 OSTF1 PLOD2 DSC2 ARG2 RICTOR CD68 ZC3HAV1 FYN RPL18A CHCHD10 RPS25 EMP3
100 SERP1 SP110 FXYD3 UGP2 SLC44A4 ST14 SELENOK HSD17B11 COL4A2 APP HCLS1 ARL14 SCNN1B NCKAP1 TNPO2 LIPA RPS14 RPS10 RPL31 GAS6 TSC22D3 RPL10A

separation of epithelial, stromal and immune cells

Cell split