knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p016t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p016t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p016t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 4457 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2919 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 NKG7 CTLA4 MZB1 VIL1 FOXP3 AIF1 TPSAB1 C1QA SFRP2 CCDC102B CDKN2B-AS1 MUC5B PNMA5 MS4A1 VWF RNF43 IL7R CCL5 PNMA5 CXCL14 KLRB1 VSIG2
2 GZMH LTB DERL3 PLEK2 TNFRSF18 CD300E CPA3 C1QB SFRP4 GJA4 CA4 MUC12 PYGB BANK1 RAMP2 PNMA5 CXCR4 GZMA CLDN3 CCL11 CD40LG MUC5B
3 CCL5 TRAC CD79A GGH CTLA4 CFP CTSG C1QC COL10A1 ABCC9 MS4A12 MUC4 RNF43 VPREB3 SOX18 ANKRD18A GPR171 IFNG CD24 C1R IL7R MUC4
4 GZMK FOXP3 IGLV3-1 RAB25 IKZF2 IL1B MS4A2 MRC1 PLPP4 ADGRF5 VSIG2 CDHR5 PCCA TNFRSF13C CLDN5 LLGL2 TPT1 CD52 S100A14 C1S IL17A B3GNT7
5 GZMA TIGIT TNFRSF17 IGFBP2 TNFRSF4 FCN1 HPGDS MS4A6A DPT CDH6 FABP2 LGALS2 CEACAM6 FCRL1 CLEC14A SCD CCR7 CD3G KRT18 FBLN1 RORA AGR3
6 GZMB CD3D FCRL5 FERMT1 LAIR2 LYZ LTC4S FOLR2 COL11A1 GJC1 ITPKA VSIG2 CLDN4 IGHM CALCRL FASN CD40LG CD2 EPCAM PDPN CD3G NXPE1
7 CCL4 TNFRSF18 IGKJ5 CEACAM6 TIGIT HCK GATA2 F13A1 GREM1 HEYL PLA2G10 CA1 KRT18 CD79A FLT1 PADI3 TRAT1 DNAJB1 IGFBP2 PDGFRA CD3D LGALS2
8 CTSW CD2 LINC02362 CEACAM5 CCR8 MNDA KIT IGSF6 EPYC COX4I2 LINC01133 CA12 SFN LINC01857 PODXL MTRNR2L12 RPS27 IL7R SFN DCN CD2 MUC12
9 CD8A MALAT1 AC104699.1 CLDN3 IL2RA CPVL SLC18A2 CSF1R THBS2 EGFLAM BTNL3 DUOX2 CD24 LINC00926 PCDH17 ARHGEF38 RPLP1 HSP90AA1 CLDN4 TMEM158 SPOCK2 WFDC2
10 CST7 TRBC2 POU2AF1 S100A14 F5 AC020656.1 HDC MPEG1 DIO2 HEY2 LGALS2 NXPE4 CDX2 BLK CDH5 RMRP CD3E CD69 GPX2 CDH11 CCR6 CA12
11 PRF1 SPOCK2 IGHA2 EPCAM TNFRSF9 FPR1 RHEX MS4A4A ISLR RGS5 CLDN8 ZG16 FERMT1 LINC01781 PLVAP PCSK9 BTG1 HSPA1B VIL1 CLMP TRBC2 GPA33
12 IFNG HLA-A CCR10 S100P SPOCK2 SPI1 GCSAML FPR3 SSC5D KCNJ8 SCNN1B SPINK4 SCD CR2 KDR VEGFA GIMAP4 DUSP2 KRT8 EMILIN1 CD3E SPINK5
13 GNLY IKZF2 JCHAIN LCN15 TBC1D4 LST1 ADCYAP1 PLA2G7 CYS1 FAM162B B3GALT5 CCL28 ELF3 PAX5 MMRN2 ANO9 SARAF TRAT1 PCCA COL8A1 FYB1 SLC4A4
14 KLRD1 TRBC1 IGKV4-1 DSG2 CD27 S100A8 IL1RL1 VSIG4 CRABP2 LINGO1 TMIGD1 PHGR1 TFF3 FCRLA MMRN1 ELF3 RPS29 PTPRC TFF3 CH25H CD52 CDHR5
15 FGFBP2 S100A4 FKBP11 PCCA ICOS LILRB2 FCER1A MS4A7 PCDH7 EBF1 CCL28 MTRNR2L12 KRT8 CD19 PALMD GPRC5A CD52 CD3D SOX9 MMP2 TRAC FABP2
16 EOMES PTPRC IGHV4-59 C10orf99 TNFRSF1B MS4A6A CMA1 CD163 ELN ANGPT2 BTNL8 B3GNT7 GPRC5A CD22 TM4SF18 ACSS2 CD3D CD48 CDX2 ALDH1A3 CREM REG4
17 LINC02446 CD3G SLAMF7 KRTCAP3 LTB FGL2 CLU MSR1 COL8A1 EFHD1 CA1 PIGR SOX9 HLA-DQA1 FAM167B TBX3 ZFP36L2 GPR171 S100P RARRES2 LINC01871 B3GALT5
18 XCL2 CD7 PNOC CD24 TRAC MPEG1 RGS13 TREM2 MMP23B HIGD1B XDH ELF3 GPX2 HLA-DRA EMCN RBCK1 RPS27A XCL1 PRDX5 CTSK CYTIP ST6GALNAC1
19 CD8B LAIR2 CD38 CMAS LAYN NCF2 VWA5A FCGR1A ITGA11 NDUFA4L2 GLDN PCK1 S100A14 AIM2 ROBO4 MKI67 CD3G FOSB FAM3D AEBP1 LCK CCL28
20 TRDC TNFRSF4 GNG7 ATP1B1 IL2RB CYBB SVOPL CD209 FAP NOTCH3 SI B3GALT5 DSP HLA-DRB5 CYYR1 PYGB RPL30 HCST PPP1R1B CYGB PTPRC AGR2
21 CCL4L2 LCK FCRL2 PERP LINC01943 IGSF6 NTRK1 C5AR1 NTM CCDC3 SPINK5 PLA2G2A FASN CD79B PCAT19 MLXIP GIMAP7 BTG1 CD320 SULF1 CD6 SMIM22
22 FASLG HLA-E AL133467.1 CD9 CD7 CSTA SLC45A3 SIGLEC1 PRRX1 LZTS1 MEP1A SLC4A4 CLDN3 CYBB CD34 SOX9 CYTIP HSPH1 CD9 NNMT GIMAP7 NXPE4
23 CRTAM CD27 MEI1 PLPP2 CD2 TYROBP HPGD CPVL KIF26B CSPG4 C2orf88 BCAS1 VEGFA CXCR5 ADGRL4 HMGCS1 JUNB STK17A SCD MXRA8 TNFAIP3 TSPAN1
24 GZMM TBC1D4 NUGGC S100A16 CD3E KYNU CDK15 RNASE6 ADAMTS2 ITGA7 SLC4A4 LCN2 S100P POU2AF1 CXorf36 PLCB4 DNAJB1 GIMAP7 PLPP2 FOXF1 TMSB4X UGT2A3
25 HCST IL2RA SEC11C TRIM2 LINC02195 BCL2A1 MAOB FCGR3A SULF1 FOXS1 UGT2A3 GPA33 PKP3 MIR29B2CHG TIE1 ARGLU1 KLRB1 CXCR4 PRAC1 LINC01082 HSP90AA1 SPINK1
26 KLRF1 PBXIP1 IGHA1 PKP2 GBP5 LILRA2 ALOX5 AIF1 ANGPTL2 GPR20 LAMA1 CKB PCSK9 HLA-DQB1 SHANK3 OLFM4 EIF1 LINC01871 TRAP1 COL6A3 TRBC1 SLC44A4
27 APOBEC3G IL7R PIM2 GPX2 CD3D S100A12 TPSD1 STAB1 GAS1 FHL5 PI3 REG4 GDF15 HLA-DPA1 ERG AC023157.3 BTG2 LCP1 FERMT1 ITIH5 STK17B PHGR1
28 CLEC2B RASGRP1 JSRP1 TSPAN8 DUSP4 LILRB3 AC106739.1 HLA-DOA FBLN2 SLC35F1 CEACAM7 MS4A12 LIPG HLA-DRB1 APLNR CENPF CD48 CYTIP CEACAM6 LSAMP STK17A AMN
29 SAMD3 RGS1 IGHGP DSP TRBC2 CD86 BTK HLA-DMB ADAM12 FAM13C C11orf86 TRPM6 TRIB3 HLA-DPB1 EXOC3L2 HSP90AA1 CACYBP BSG ANTXR1 TPT1 FAM3D
30 GIMAP7 CACYBP SPAG4 TFF3 CD3G FGR ITGA2B TFEC FBLN1 OR51E1 HRCT1 NXPE1 MKI67 PARP15 SOX17 PTPRC GZMK DSP LUM ARHGDIB SULT1B1
31 HOPX LINC02195 PRDX4 MAL2 ZC3H12D HLA-DRA PTGS1 FCGR2A CTHRC1 EDNRA AC008397.1 AMN LLGL2 SPIB KANK3 CLEC2D DNAJA1 GAPDH MXRA5 S100A4 ATP2C2
32 MATK FYB1 IGLL5 SMAGP HLA-A PILRA TYROBP LILRB5 CLMP ACAN DUOX2 UGT2A3 ST14 CD74 SNCG RPS12 TMSB4X ADIRF SERPING1 DNAJB1 SELENOP
33 GIMAP4 TNFRSF9 XBP1 PHLDA2 IL32 CD300LB ARMH1 CMKLR1 MFAP4 MCAM AGR3 ATP2C2 LCN15 CD40 TEK HSP90AB1 CD40LG GDF15 BICC1 CD69 CDC42EP5
34 PLEK ICOS CRELD2 CKMT2 S100A4 AQP9 TMEM233 LILRB4 SCARF2 TBX2 AMN AGR2 PIGR IRF8 FAM69B RPS15A ANXA1 PKP3 COL6A2 TIFA HOXB13
35 PTPRC MAF EAF2 KRT18 MAF C19orf38 CALB2 CYBB HTRA1 COL5A3 HHLA2 ERN2 TNNC2 HLA-DQA2 SOX7 CD2 THEMIS LGALS4 DKK3 RPLP1 PLA2G2A
36 TRGC1 TTN IGHG3 KRT8 RASGRP1 CSF1R P2RX1 MNDA POSTN GUCY1A2 SULT1B1 NUPR1 EHF CD83 MYCT1 CD69 HOPX ELF3 WNT5A HSP90AB1 PLA2G10
37 DUSP2 TNFRSF1B SSR4 ALDH2 CARD16 CLEC7A PTGS2 SPI1 ANTXR1 MYH11 C3orf85 SMIM22 SLC12A2 HLA-DMB ARHGEF15 TRBC2 HSPA8 KRT19 PCOLCE LAT LCN2
38 TMSB4X CD3E IGKJ4 DPEP1 CCR4 SMIM25 ALOX5AP LY86 OMD IL17B CA2 OLFM4 ATP1B1 CD37 NOVA2 HSPA8 CD3E RNF43 FBN1 RGS1 TSPAN8
39 CD247 STK17B CD180 TST LTA CD36 LAT2 HLA-DQB1 AEBP1 OLFML2A C15orf48 LEFTY1 TBX3 RALGPS2 RASIP1 RPS19 HSPA1A ATP1B1 COL12A1 SRGN SPDEF
40 TBX21 BTG1 SDF2L1 TRIB3 TOX2 CD93 IL5 ADAP2 C1QTNF7 ARHGEF17 CTSE SULT1B1 MET BASP1 NPR1 IL23A TNFSF14 UQCRC1 AGT CLEC2D TMEM54
41 CD69 SRGN SPCS2 CLDN4 CD28 S100A9 LYL1 CD14 CDH11 SEMA5B MUC4 CA2 TRIM2 POU2F2 EGFL7 RARRES3 CLEC2D ALDH2 SERPINF1 BCL11B PIGR
42 RARRES3 SKAP1 UBE2J1 CDH1 RGS1 OLR1 TMEM154 GPR34 COL12A1 SERPINI1 C1QTNF12 FAM3D ZNF703 LY86 ADCY4 RPS25 TRAC TKT IGFBP5 LCP1 SLPI
43 HLA-A CYTIP IGKV3-20 HSD17B12 RORA ITGAX CAPG CD86 MRC2 PDGFRB SLPI GOLM1 NCR3LG1 SELL FAM110D RPL32 TRBC2 CDX1 ADAMDEC1 HSPH1 AOC1
44 HLA-C CCR6 FKBP2 AGR2 SIRPG CD1C CADPS SLAMF8 COMP AC100793.2 CHP2 CDC42EP5 FADS2 LTB AFAP1L1 HSPA1B CD6 GGH TPM2 SARAF FAM83E
45 CACYBP SIT1 CD27 CDX2 GBP2 C5AR1 CATSPER1 NCF2 ISM1 MAP1B AHCYL2 SLC44A4 TRAP1 IKZF3 RAPGEF3 DNAJA1 HSPD1 ST14 COL14A1 GMFG ITLN1
46 CD160 STAM SPCS3 FAM3D STK17B AC245128.3 FCER1G PILRA MMP11 RGS7BP CDHR5 PRR15L NOXO1 FCGR2B TMEM255B TRAC RGS2 SLC12A2 THBS2 BTG1 BCAS1
47 LCP1 AC058791.1 SSR3 KRT19 LCK SCIMP AL359636.1 SLCO2B1 FIBIN CSRP2 AKR1B10 SPINK5 CD9 RPS20 CCM2L RPL10 HSP90AB1 CYC1 COL6A1 CTLA4 FCGBP
48 HLA-E GBP2 MANF SLC12A2 LAT LILRA5 GMPR AC020656.1 FRMD6 PTP4A3 GUCA2A TLN2 PLCB4 MARCH1 PCDH12 EIF4A2 JUND MT1A C11orf96 DNAJA1 PCK1
49 ZNF683 EIF4A2 IGKV3-11 COX5A IL7R RETN ACSL4 MARCH1 LOXL2 PPP1R14A PLAC8 CES2 MYH14 CXCR4 S1PR1 RPS20 RGCC RAB25 GLT8D2 GPR171 ELF3
50 GPR174 IRF1 ZBP1 FXYD3 PTPRC CD68 C1orf162 HCK BGN NFASC B3GNT7 TMEM54 MUC13 FAM49A JAM2 TXNIP FYB1 DPEP1 THY1 LTB LEFTY1
51 EIF4A2 HLA-C TENT5C NDUFA9 PBXIP1 PLEK CLNK SLC15A3 GLT8D2 PLXDC1 IGSF9 POF1B ABHD2 RPS8 DYSF RPSA RARRES3 ASCL2 WNT2B CD37 MS4A12
52 CD52 CXCR6 TP53INP1 PKP3 RAC2 LYN CD22 SDS COL16A1 ADAMTS1 PPP1R14D PRSS8 CDH17 TCF4 SEMA3F FOSB RPS27 CDH17 PCDH18 JUND PRAC1
53 TRGC2 DNAJB1 MANEA TMEM45B UCP2 OSCAR GLUL DAPK1 PTN COL4A1 GPA33 USH1C NRARP BCAS4 INHBB GPR183 XCL2 ATP5F1B EDIL3 CACYBP ZG16
54 CD2 RTKN2 IGKC AKR7A3 RTKN2 CD14 LEO1 HLA-DQA1 OGN ANGPT1 AOC1 ARL14 HOOK1 LRMP PREX2 SERTAD1 CD96 DSG2 DDR2 ICOS LGALS4
55 DOK2 CD28 HERPUD1 MCRIP2 CD177 ADGRE2 NSMCE1 LILRB2 MMP2 GUCY1B1 A1CF MT1E UQCRC1 BLNK IL3RA CACYBP RPS29 TRIB3 ISLR RARRES3 TFCP2L1
56 DNAJB1 ARHGDIB PLPP5 TMPRSS4 GATA3 HLA-DRB5 SRGN LYZ COL5A2 MAP3K7CL HOXB13 DST CLUH RPS27 F2RL3 RPL13 SRGN PRSS3 COL3A1 CXCR4 GOLM1
57 HSP90AA1 CD4 U62317.5 PCSK9 CD247 LILRB1 SAMSN1 ENPP2 SGCD RASD2 LRRC19 CRACR2B GALNT6 SMIM14 VEGFC DDX5 CLEC2B GSTP1 LRRN4CL APBB1IP MUC13
58 CCL3 GBP5 SEL1L GDF15 ARHGDIB SLC11A1 RENBP HLA-DMA CTSK EPHA3 C19orf33 MT1G CDH1 RPLP2 HSPA12B SRGN JUNB C10orf99 CALD1 GPR183 ITM2C
59 PYHIN1 IL2RB LINC01480 SFN CXCR6 RGS18 IL13 NPL DKK2 ENPEP TMEM253 EPS8L2 HNF4A RPL34 APLN ANXA1 KLRB1 AGR2 FSTL1 AC020916.1 EPCAM
60 RPS27 JAK1 FAM30A LGALS4 FYN HLA-DMB ALDH1A1 LST1 DCN ADAMTS4 SDCBP2 KLF5 OLFM4 DAPP1 FCN3 RPS16 CST7 TPI1 PODN CXCR6 KRT19
61 ANXA1 SOD1 RAB30 CDX1 RNF213 MARCH1 AKAP12 SUCNR1 MXRA5 S1PR3 CA12 FCGBP FOXQ1 KLF2 FLT4 RPL9 TRBC1 TST COL5A1 MAF ERN2
62 TNIP3 SAMSN1 IGHG1 GAPDH IL21R SERPINA1 CSF2RB SLC7A7 CCDC80 MGP TFF1 EFNA1 DSG2 CTSH JCAD RPS3A SH3BGRL3 MCRIP2 CFH TRAT1 CA1
63 DNAJA1 RORA CLPTM1L HMGB3 CCR6 SLC8A1 CD82 RASSF4 NCAM2 SLIT3 FCGBP SELENBP1 VIL1 REL PTPRB TMSB4X DOK2 CDH1 IGFBP6 PDE4D SI
64 CD3E JUND IGKV1-5 FDFT1 STAM HLA-DQB1 LAPTM4A CD93 COL5A1 TPPP3 GPT SYTL2 EPHB3 RIPOR2 HECW2 RPL34 GIMAP4 ATP5MC3 BMP4 IL22 SPINK4
65 CD48 RPS27 IGHG2 FADS2 PRDM1 CXCL8 RAC2 IGSF21 EFEMP2 ANO1 SMIM31 TCF7L2 SOX2 IER5 LHX6 LTB TNFAIP3 FADS2 RUNX1T1 DOK2 TFF1
66 TAGAP ANKRD12 IGHG4 PPP1R1B REL TREM1 GRAP2 GATM MXRA8 COL4A2 PDZK1IP1 EPS8L3 HES1 SWAP70 NOS3 RGS2 NEU1 TSPAN8 FGF7 PBXIP1 EFNA1
67 XCL1 SELL IGLC2 CDH17 SLA C1orf162 MITF CLEC7A COL6A3 ADGRA2 MUC5B TMC5 PRSS8 RPL23A FGD5 RPS14 TPT1 PTMS ANGPTL2 PTPN22 CLDN4
68 TRBC1 RNF213 LMAN1 UCHL3 CCDC141 SIRPA CTSW SIRPA PCOLCE CD248 TRPM6 AOC1 AC103702.2 CCR7 SLCO2A1 HLA-E CCL4 TRIM2 FIBIN HSPA8 FXYD3
69 LAG3 GMFG ERLEC1 PRSS3 SKAP1 FPR2 CD9 LAIR1 EMILIN1 CARMN CASP5 ABCC3 TMPRSS4 RPL13A SEMA6B STK17B GRAP2 PKP2 GPC6 CD247 CLDN3
70 IKZF3 BCL11B CADM1 LSR CACYBP OGFRL1 BACE2 FCER1G PDPN ATP1A2 PRR15L APOBR FABP1 PMAIP1 DOC2B CD6 CD8A PHGR1 COL1A2 LAPTM5 NUPR1
71 MALAT1 CARD16 ISG20 MPST CD4 ITGB2 VIM ITGAM COPZ2 ARHGAP42 DUOXA2 TRPM4 ANO9 NFKBID ACKR1 RPS4X HSPE1 PERP COL5A2 HSPA1B PLAC8
72 SRGN HSPA1A NUCB2 KRT20 HLA-C EREG STXBP6 FGL2 CD248 LHFPL6 DHRS11 PI3 ADIRF CD48 THSD7A RGCC H3F3B S100A16 NEXN DDX5 TNFRSF11A
73 STK17A CD247 LY96 VDAC2 FYB1 G0S2 RGS10 HLA-DQA2 SPOCK1 PXDN SCIN GUCA2A FAT1 RPS14 ARHGAP29 FYB1 GPR174 LGALS3 MRC2 HSPA1A CES2
74 B2M H3F3B IFNAR2 FAM213A SH2D2A CLEC4E ANXA1 GAL3ST4 GJA1 CRIP2 MAOA PLAC8 SELENBP1 RPS23 AQP1 AC020571.1 BTG2 DCTPP1 VCAN ITM2A TMC5
75 CYTIP EIF1 SRPRB PRDX5 B2M ZNF385A SMYD3 CD68 PRRX2 FRZB DEFB1 VPS13A ABHD11 RPS11 ESM1 BCL11B TXNIP CHCHD10 LTBP2 FXYD5 NEU4
76 CD3G TMSB4X HSP90B1 TKT PTPN22 HLA-DRB1 TMEM176B SLC1A3 PDGFC COL18A1 SLC44A4 TMEM238 BSG RPL11 ADGRF5 JUN SARAF ARSE MFAP4 SH3BGRL3 TCEA3
77 ITGAL RPS26 TXNDC11 ATP5F1B TRBC1 IL1RN CTTNBP2 C3AR1 THY1 CSRNP3 EDN3 ITM2C C19orf48 RPS12 ZNF385D ARHGDIB STK17B CEBPA FAM20C RAC2 EPS8L3
78 THEMIS RAC2 CEP128 SCD CORO1B LRRC25 BEX4 TYROBP C1S TFPI C2orf72 SLPI ITGA6 RPS29 THSD1 RPS3 ID2 CKB SDC2 PNRC1 DUOX2
79 JUND TXNIP PDK1 EBP CCL22 LY86 FTH1 CD163L1 LOX PLN TFCP2L1 PLCE1 SURF6 SP110 FOLH1 NABP1 B2M MRPS35 PLAT CD28 C2orf72
80 SLAMF7 DUSP4 TXNDC15 PPA1 SRGN TNFSF13B PTPN6 S100A9 GLI3 ARHGAP29 MUC12 ST6GALNAC1 ENTPD6 RPL18A BCAM HSPE1 HLA-E C19orf48 CTHRC1 CD48 MT1E
81 ITM2A VMP1 SELENOS TMEM54 CREM HLA-DQA2 CD37 SIGLEC10 C1R CALD1 PRSS3 FAM13A EFNA1 ADAM28 RHOJ RPL31 PTPN22 ALDH1B1 CCDC80 TAGAP STX19
82 ID2 TSC22D3 BEX5 TPI1 HLA-E HLA-DMA GALC HLA-DRB1 PODNL1 FILIP1 TSPAN1 MUC2 HES6 STK17A SELE HSPA1A DDX5 EPHB2 FOXF2 REL REP15
83 BTG1 B2M SPCS1 ANXA4 ARID5B PTGS2 CD63 CCR1 DKK3 A2M ABCC3 FRYL PRAC1 RPL37 GPR146 DUSP1 ARHGDIB DEGS2 BGN IKZF3 C15orf48
84 NEU1 ICAM3 SEC61B ETHE1 POU2F2 CLEC10A CD69 SLC16A10 CDH2 ADAP2 WFDC2 HIST1H2AC HMGCS1 RPL19 PLCB1 RPL23A DEDD2 COX5B SPON2 B2M SPINT1
85 AOAH SYNE2 CD79B KLF5 FNBP1 EMILIN2 FBP1 HLA-DRB5 LRRC17 C11orf96 TMEM45B NDRG1 PTMS FCMR FAM107A H3F3B GZMM PCSK9 FENDRR DEDD2 PRSS3
86 CD7 SLA ELL2 BSG SAMSN1 ADAM8 TNFSF10 NRP1 LUM EHD2 MALL AL355075.4 JAG1 ORAI2 LMO2 RPLP2 DUSP1 PIGR CLEC11A ALOX5AP ATP8B1
87 SH3BGRL3 DDX5 RALGPS2 MUC13 SLAMF1 HLA-DPA1 BMP2K LIPA ETV1 RNF152 PLS1 MTRNR2L12 HHEX NRN1 EGR1 EIF4A2 MUC13 CCL2 HSPD1 POF1B
88 RAB27A TOMM7 DERL1 MRPS35 TNFAIP3 PLAUR CLIC1 TBXAS1 FBN1 GUCY1A1 COL17A1 RRBP1 RPL32 SPARCL1 GMFG PPP1R15A ECHS1 PITX1 AC058791.1 FZD5
89 CD3D FYN ICAM2 EHF CORO1A JAML ITM2A OGFRL1 CILP2 PGF SLC51B MGAT4B EEF1B2 DLL4 IRF1 RPS19 MACROD1 COL1A1 ARNTL PLS1
90 CXCR4 APBB1IP RASSF6 HMGA1 SOD1 PHACTR1 CAVIN2 CD300A NEGR1 PDE1A NAPRT MSX1 RPL21 SCARF1 RPS26 TAGAP USH1C LAMA4 GIMAP4 HOXD13
91 H3F3B LAYN CXorf21 ITGA6 TTN CD1E CTNNBL1 SIGLEC12 MRGPRF DCLK3 MYH14 NEAT1 RPS6 GALNT18 ANKRD12 CHORDC1 HADH PDLIM3 EIF1 GALNT5
92 HSPA1A DOK2 ALG5 VDAC1 SIT1 NLRP3 P2RY14 LRRC25 TPM2 NEURL1B PARM1 PTPRO RPS18 PDGFB PTGER2 GNLY PHLDA2 CYBRD1 IRF1 MEP1A
93 SKAP1 BTG2 MIR29B2CHG ATP5MC3 ICAM3 FAM49A NFKBIA SLC37A2 COL6A2 PHYHIPL LCN2 HMGA1 RPL9 CD93 FAU RPS27A HMGA1 NDN EML4 SCNN1B
94 CORO1A IL32 SEL1L3 MGST2 JAK3 MS4A7 TESPA1 SCIMP GPX8 CACNA1H NR5A2 ACSS2 LAT2 RAPGEF4 ITK JUN CMAS SPARC CORO1A MAOA
95 ARHGDIB GATA3 SERP1 MDH2 CYTIP ADA2 ARHGEF6 APOC1 COL8A2 TNS1 PLA2G2A PHLDA2 RPS25 PDE2A JUND SPOCK2 COX5A FAT4 CCL20 LIPH
96 LINC01871 PHTF2 IGHM LGALS3 BTG3 LMO2 TIMP1 FPR1 CERCAM SDC2 GGT6 PCK1 TBC1D9 BMX CALM1 SKAP1 CKMT2 MYL9 PLIN2 TSPAN13
97 HSPE1 SARAF IGLC3 AHCY GMFG LRRK2 ARHGAP18 MERTK RARRES2 COL5A2 SLC6A14 RABL6 RPS27A RPS6KA2 RPS6 RPLP1 RPS21 CPED1 SLA S100A6
98 OASL FCMR BHLHE41 UQCRC1 PFN1 COTL1 ADGRE2 SPP1 ASPN TGFB1I1 DMBT1 FGFBP1 MEF2C FILIP1 UBA52 ALOX5AP TMPRSS4 IGDCC4 ERN1 TRPM4
99 HSPH1 SMAP2 FBXW7 CYC1 P2RY10 TNFAIP2 LIF TLR7 GPC6 LAMA4 CGN SOX4 GPR183 ST6GALNAC3 RPL19 RASGRP1 RPL8 KANK2 STK4 KLF5
100 ABI3 CD53 GYPC SCNN1A SELL CTSS RAB32 NFAM1 IGFBP6 CPE CCDC68 CD320 RPS5 TCF15 RPL21 UBC LCN15 IGFBP7 HLA-E CKB

separation of epithelial, stromal and immune cells

Cell split