knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p016n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p016n"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p016n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5768 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3894 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 3 4 5 6 7 8 9
1 MZB1 HEXIM1 HELLS ITLN1 HES1 CA1 MZB1 CCL5 CD2 OTOP2 MTRNR2L12 SLC26A3 LEFTY1 CLCA4 SERPINA1 RPS18 IGFBP7 CTSE AQP8 SPIB CA1 CA2 MUC2 MZB1 HLA-DRA
2 DERL3 HES1 GABPB1-AS1 MUC2 Z93241.1 B3GALT5 DERL3 CD3D CD3G BEST4 NXPE1 PHGR1 ADH1C AQP8 BEST2 RPS2 CXCL14 MEIS1 GUCA2B CA7 CA2 FGFBP1 REP15 DERL3 HLA-DPA1
3 TNFRSF17 CSKMT ATAD5 CLCA1 HIST1H4C SLC26A2 IGHA2 CD2 CD3D CA7 NXPE4 KRT19 C1QBP MS4A12 ITLN1 RPL36 SPARCL1 LYZ TMIGD1 BEST4 SELENBP1 LGALS4 CLCA1 TNFRSF17 HLA-DPB1
4 IGHA2 HIST1H2BG SLC12A2 REP15 HEXIM1 CA2 FKBP11 TRBC2 IL7R DMBT1 PLCE1 SELENBP1 PPP1R1B CEACAM7 KLK1 RPL29 COL3A1 SPIB CLCA4 HES4 FABP1 AKR1B10 ITLN1 JCHAIN CD83
5 FKBP11 Z93241.1 MLXIP SERPINA1 HIST1H2BG SULT1B1 TNFRSF17 CD3G KLRB1 PCSK1N ASH1L CA1 KRTCAP3 CEACAM1 TPSG1 RPL35 MGP CA7 CEACAM7 ADCY5 PHGR1 CA1 TFF3 SSR4 HLA-DRB5
6 SPAG4 HIST1H4C CDCA7 KLK1 SOX4 NXPE4 SEC11C CD3E TRAC OTOP3 S100A6 IMPDH2 ABCG2 MUC2 RPS19 SPARC HEPACAM2 ABCG2 OTOP2 KRT19 FXYD3 FCGBP PIM2 HLA-DRB1
7 CCR10 SOX4 NXPE1 TFF3 HIST1H2AG CD24 BST2 TRBC1 CD3E CA4 FABP1 RARRES2 SLC26A3 RETNLB RPL13 LUM AC020656.1 MS4A12 PROX1 CKB PKIB SERPINA1 SEC11C MS4A1
8 PRDX4 IER5L OLFM4 TPSG1 AL021453.1 METTL7A ISG20 CD7 FYB1 C2orf54 CKB EBPL TRIM31 FMOD RPL37 CFH CPA6 SELENOP NOTCH2 SLC26A3 SELENBP1 KLK1 EVI2B BANK1
9 SEC11C RASD1 TRIM2 FCGBP HIST1H2AH SLC26A3 POU2AF1 LINC01871 TRBC2 SLC2A5 CA2 ECHDC3 DST MB RPL12 COL1A2 GMNN CEACAM1 HEPACAM2 C10orf99 ETHE1 SPDEF IGKJ5 HLA-DMB
10 CD27 IER5 NXPE4 SPINK4 AC007613.1 PLCE1 IGLL5 KLRB1 GIMAP7 SPIB KRT8 PRAC1 GUCA2A ANXA13 RARRES2 A2M RHOV GUCA2A NEURL1 ADIRF ADIRF ZG16 SLAMF7 CXCR4
11 IGKJ5 HIST1H2AG MLH3 WFDC2 AL355075.4 MIR194-2HG CD79A ANXA1 ARL4C PRKG2 ELOB MRPL11 SAMD9 CCDC196 RPL31 ADAMTS1 NOTCH2 C11orf86 ADRA2A FXYD3 S100A14 ANO7 VIM HLA-DQB1
12 PIM2 HIST1H2AH ANKRD18A SPDEF HIST1H4B PIGR CD38 HCST CD52 GUCA2A HES1 NDUFAB1 DUOX2 AP002498.1 RPL37A COL6A2 LEFTY1 SECTM1 LYZ HSD11B2 C10orf99 B3GNT6 UBE2J1 LAPTM5
13 IGLV3-1 EGR1 MKI67 ZG16 SELENBP1 SELENBP1 JCHAIN CST7 HCST ADCY5 HEXIM1 SUCLG1 SLC17A4 ATOH1 RPS5 DCN UNC5C CDA DMBT1 PIGR LGALS2 ST6GALNAC1 FKBP11 GPR183
14 SLAMF7 AL137077.2 CFTR RETNLB MAFB CDH17 RAB30 IL7R CXCR4 CTSE HIST1H4C TXN KRT20 CLCA1 RPS15 PLAT BIK HRASLS2 CCND1 LGALS4 LGALS3 SYTL2 IGHGP SCIMP
15 CD79A NRARP SOX9 SPINK1 HIST1H2BF HSD11B2 CYTIP IL2RB SPOCK2 GUCA2B ADIRF RPS6 TRPM6 KIAA1324 RPL28 TIMP3 AP000866.2 PLAC8 RHOV SLC26A2 CD24 BEST2 IGKC LY86
16 AMPD1 IER3 NKTR ST6GALNAC1 AC023157.3 PANK3 GYPC CD96 TRBC1 FRMD1 SLC26A2 PHB2 TMIGD1 AC005833.1 RPL27A COL6A1 ITGA2 SLC26A3 TMSB10 KRT8 VSIG2 DLL1 TENT5C CD52
17 SPCS2 HIST1H3A SYNE2 ANO7 MTRNR2L12 CKB SSR3 TRAC CCL5 CDHR2 KRT18 ESD PLAC8 SPINK4 RPS8 COL4A1 KRTCAP3 EMP1 GNPTAB BSG FABP1 RAP1GAP SRGN HLA-DQA1
18 SDF2L1 MAFB FERMT1 RAP1GAP IER5 TRPM6 AC104699.1 NKG7 ANXA1 CEACAM6 FXYD3 RPLP0 RSAD2 REP15 RPS11 C1R NEURL1 SLC51B CDC42BPA LGALS2 AKR7A3 MLPH IGHA2 CD37
19 GNG7 AMD1 NUPR1 KRT18 PCK1 LRRC19 HERC5 LCK CD28 MYOM1 LGALS3 IGFBP2 DDX60 RAP1GAP RPL8 CALD1 CCND1 TRIM31 PCSK1N S100A14 CKB ATOH1 IGHA1 AFF3
20 IGHA1 IER2 PAXBP1 BEST2 NRARP MOGAT3 SSR4 CD247 LCK HES4 IFI27 PRDX3 ISG15 GALNT8 NUPR1 C1S ASAH1 IFIT1 SHTN1 S100A6 FAM162A FRYL ISG20 LTB
21 JCHAIN SOCS1 MYB ATOH1 PIGR ACSS2 SPCS2 FYB1 LCP1 KRT20 IER5L ATP5MC2 SELENOP IL1R2 RPL18A GNG11 BID KRT20 GUCY2C CES2 PRSS3 PRUNE2 HERPUD1 SELL
22 POU2AF1 ZFP36L2 LBR RNASE1 AMD1 MTRNR2L12 VIM GIMAP7 PTPRC ADRA2A CHCHD10 PEBP1 ABCB1 TFF3 PRAC1 FBLN1 PPIC CDKN2B-AS1 FRMD1 CD24 SPINK5 SLC4A7 CYTIP HLA-DQA2
23 MANEA POLR2A ZKSCAN1 RPL36 AC005837.1 LPCAT4 FCRL5 CREM GIMAP4 NEURL1 UQCRQ GSTO2 XAF1 SLC12A2 PRDX5 MCAM EBPL CA4 SCIN LGALS3 KRT19 WNK4 JUN CD74
24 SSR4 ELF3 ETS2 GALNT8 AL137077.2 CES2 LINC02362 LCP1 ICOS SCIN MT1G ATP5MC1 HRASLS2 ARFGEF3 RPL13A COL14A1 FABP5 RSAD2 CDHR2 ID1 COX7A2 HEPACAM2 IGHG2 TNFRSF13C
25 FCRL5 MALAT1 HMGCS2 AGR2 ELF3 SLC4A4 IGLC7 GPR65 S100A4 MSLN LGALS4 GPX2 MUC12 SPINK1 RPS24 COL6A3 SLPI HPGD APOBR SULT1B1 UGT2B17 SPINK4 CD27 VPREB3
26 TNFRSF18 RHOB IRF2BP2 MLPH ZFP36L2 GPA33 SRGN TNFAIP3 SRGN LYPD8 PPDPF RPS24 LMO7 WFDC2 RPL32 MFGE8 CD276 TRPM6 ARGLU1 CDHR5 SQOR WFDC2 RAB30 POU2F2
27 BST2 PCK1 PRKAG2 TPM1 CHP2 SELENOM GZMA LTB CEACAM7 MT2A BZW2 HPGD RNASE1 RPS12 PTN NIPSNAP3A IFIT2 DSP COX5B COX7B ARFGEF3 SSR3 AC004687.1
28 SSR3 CLDN4 ARGLU1 B3GNT6 EXPH5 SDF2L1 CD52 CD6 CDK18 ATP5F1D SPINK1 CDHR5 FCGBP RPS9 NKX2-3 THOC7 ABCB1 MDK GPA33 MT1M MUC4 GYPC SMAP2
29 UBE2J1 HIST1H3H NEO1 AC005833.1 PAPSS2 CD27 ZNF331 CD69 HEPACAM2 NEAT1 AQP1 LINC02023 ST6GALNAC1 RPS21 SERPING1 RAB25 SULT1A2 ID4 TMEM54 ATP5MC3 CRACR2A PRDM1 CXCR5
30 LY96 HIST1H4A FAM120A TCIM PARM1 IGKJ5 FYN LAPTM5 SDCBP2 BSG RAB25 MIER3 IGFBP2 RPL11 NNMT ADRA2A IFI27 MYO10 TSPAN1 ATP5MD ITPR2 EAF2 CD53
31 EAF2 LINC01970 CDK6 FAM3D HMGCS2 IGHA1 ALOX5AP ARHGDIB NPY1R TMEM54 PPP1R14B IFIT1 TMEM61 RPLP0 EMILIN1 ANXA3 IFIT3 SIPA1L2 B3GALT5 UQCRQ CREB3L1 TIMP1 PAX5
32 PRDM1 MARCKSL1 UGT2A3 KIAA1324 MUC4 PRDX4 RGL4 CD7 LINC01559 MT1E COX5A TMCC3 SPDEF TMSB10 CAVIN3 PROX1 ISG15 LUC7L3 PAPSS2 KRT8 KIAA1324 BST2 LCP1
33 ISG20 AL355075.4 CCND2 RASD1 LLGL2 DUSP5 PTPRC LINC01871 SRI COX5B PAICS TCF7L2 ETS2 CCDC34 LAMA4 EPCAM ENTPD8 GRN MT1G UQCR10 ATP2C2 KLF2 FCER2
34 TXNDC15 HIST1H2BF PIGR SYTL2 TDP2 PRDM1 TRAT1 GZMM MDK SFN FABP5 PDZD3 DLL1 RPL14 ITIH5 NFIB SDCBP2 TLE4 MGLL SLPI SPINK1 CD79A SWAP70
35 NUCB2 CITED2 DSG2 ANXA13 MAP2K6 PDIA6 XCL2 TNF DST PRSS3 TSPAN8 SECTM1 CA8 RPL38 MMP2 PLXDC2 SCNN1B BPTF GOLM1 ID1 SLC12A2 IGHG3 CD22
36 CRELD2 HIST1H4B VMP1 DLL1 ATP8B1 SPAG4 CD69 SLA MEIS1 KRT20 UQCRFS1 SLC6A8 CREB3L1 RACK1 FSTL1 HES4 ANPEP RASSF6 UQCRC1 AKR1C3 GALNT5 PABPC4 MPEG1
37 IGKC PPP1R15A ANKRD36C CDC42EP5 LGALS1 CXCR4 TIGIT HRCT1 C10orf99 CYB5A MTRNR2L12 ZG16 RPS27 FOXF1 MECOM TSPAN1 GOLIM4 ELOB LCN2 RNASE1 ITGA4 CYBB
38 MANF DDIT4 PNISR CRACR2A MANEA HOPX LCP2 MEP1A MT1X SNRPF ANPEP L1TD1 GSTP1 WWTR1 SNX7 C2orf88 MTRNR2L12 PLCD3 CDKN2B-AS1 TPM1 FCRL5 CCR7
39 HERPUD1 JUN KLF5 MUC4 WARS SAMSN1 GPR65 CCNYL1 AL355075.4 ATP5PB IGSF9 SCGB2A1 RPS29 COL5A1 PYCARD MUC12 CDH17 UGT2B17 ECHS1 ETS2 HSP90B1 CD79B
40 RAB30 NEAT1 AHI1 SLC12A2 MANF ARHGDIB GPR171 CDHR5 S100A14 RPL39 SDCBP2 IMPDH2 RPS3 CCDC80 IGFBP2 RHOC PCLO VSIG2 PHGR1 ERN2 GNG7 HLA-DMA
41 JSRP1 HIST4H4 ATP8B1 CREB3L1 MEI1 ICOS CD40LG TDP2 CES2 PRDX5 DDX58 AGR2 RPL10A COL5A2 AKR1C3 SAMD9 AKAP9 CHP2 COX6C AKAP9 MEF2C RIPOR2
42 LINC02362 TMSB10 RNF43 HEPACAM2 ICAM2 GZMB CST7 CEACAM1 MS4A12 RPSA PARP14 PPP1R1B TMEM238 NID1 MSLN BTNL8 MT1G HES1 TST BCAS1 DUSP5 PTPRC
43 AC104699.1 HIST1H2BB ZBTB38 SH3BGRL3 TCF4 LCP2 RASGRP1 GSN HSD11B2 PPA1 EMP1 ALDH1A1 SPINK1 CRIP2 PPP1R1B DST ITPR2 CHCHD10 MRPL41 AGR2 CCDC88A MARCH1
44 PDIA6 HIST1H2AM CRYBG1 NEDD4L MEF2C CLEC2D GRAP2 C1orf21 HIST1H2BG MPC2 MXI1 FRZB RPS14 LHFPL6 HES5 PKIB C1orf21 GPT COX5B PRKAG2 TRAM1 FCMR
45 XBP1 RND3 PRAC1 RPS15 EVI2B IFNG SAMSN1 AOC1 TSPAN1 AGR2 DDX60L RARRES2 RPS6 HTRA1 BEX3 SLC17A4 SLK PRSS3 NDUFB3 TC2N PRDX4 ARHGDIB
46 SELENOM GPRC5A BDP1 IGFBP2 EAF2 GIMAP4 CD48 HSD17B2 Z93241.1 RPL10A HHLA2 DNAJC12 RPL18 LIFR RNF186 TMEM37 CCSER1 ETHE1 CHCHD10 TCIM IGHG4 REL
47 VIM BTG1 ITGA6 FRYL PIM2 AC020571.1 SLC2A3 DSC2 COX6B1 CFTR CGN FGFR2 RPS26 AKAP12 TMEM176A PTPRR MAP7 MT1M TMEM54 GOLGB1 XBP1 SLC2A3
48 LGALS1 HSPA1B PLCE1 IL1R2 TIMP1 S100A4 TRAT1 UNC5C VSIG2 PTPRO BTNL3 TSPAN13 SOX4 FBN1 AGR3 PRR15 HIST1H1E MVP PYCARD NEDD9 IRF4 BASP1
49 HSPA13 AL031777.3 TSPAN8 RPL13 SEC61B SRGN FYN SLC17A4 AC023157.3 RPL7 IFIT2 MARC1 RPL7A COX7A1 VPS35 FABP1 TPM1 COX7B MGST3 SCNN1A SERP1 TUBA1A
50 MEI1 PPP1R10 LUC7L3 GALNT5 CRELD2 RASGRP1 CD247 PTPRR PIGR RPL7A CEACAM6 PRAC1 HEXIM1 TMEM47 CARS2 CEACAM6 KLF5 ATP5MD TXNDC17 ITGA6 KLHL6 CD69
51 TIMP1 PIGR PRKDC RPS18 NUCB2 LAPTM5 ARHGAP15 S100A10 AL137077.2 ECH1 MX1 MLPH RPL23A RBPMS NBPF14 LINC01133 BAZ2B TXN GOLM1 NEDD4L SEC61B BCL2A1
52 ICAM2 KLLN EEF2 RPL38 SUB1 LTB TMSB4X CDC42BPA HIST1H2BH RPS3A TMEM37 NEDD4L RPS16 EHD2 CHRM3 MISP SPTLC2 PLA2G2A ACADS NXPE4 SPCS1 BLK
53 GYPC FAM84A WNK4 HERPUD1 GPR171 GATA3 GPA33 RND3 ATP5F1C APPL2 B3GNT6 RPLP2 CAV1 ADCY5 PRSS3 HIST1H2AC MT1X DBI KLF4 FBXW7 MIR29B2CHG
54 SPCS1 SOX9 RPL12 SLAMF7 GZMM ALOX5AP KRT8 GPA33 UQCRH TSPAN1 IL13RA1 RPL35A COL4A2 CDX1 CDHR5 LRMP KRT18 SULT1B1 GMDS TSC22D3 LAT2
55 KLHL6 HIST1H4H KLF4 SPCS3 SLC2A3 CREM ID1 CD24 TSPO MXD1 AGR3 RPS23 ADGRL3 DCTPP1 HSD17B2 AOC1 S100A16 GSE1 HSP90AA1 CD79A
56 CD38 HIST1H3B RPS11 EMP3 PRF1 CD37 NOTCH2 ELF3 RPL5 CYP3A5 FOXA3 HES1 MXRA8 CYB5A CLDN23 AMN S100A6 ARGLU1 CD48 PARP15
57 SPCS3 CEBPB C12orf57 ITGA4 ARL4C CLEC2D PROX1 MUC12 THOC7 GPA33 RPS6 HIST1H3G FOXF2 MRPL58 CFDP1 TST TSPO RASD1 AC104699.1 LRRC4C
58 IFNAR2 HIST1H4E NUPR1 SPINK2 CLEC2B BTG1 S100A6 ID1 TRABD2A IFIT3 ALDH1B1 RPS15A IL1R1 NDUFB5 APPL2 MT1E NDUFB9 EHF FOS LYL1
59 IGKV4-1 HIST1H3C XBP1 CCR10 EVL GZMA SI IER3 RANBP1 C19orf66 CDCA7 RPL30 CAVIN1 LPCAT2 DDX60 SMIM22 DEFB1 CCND2 POU2AF1 LY9
60 A1BG VEGFA ERN2 BMP6 TRGC2 RARRES3 SAMD9 CLDN3 SLC12A2 MALAT1 CERS6 RPL22 MXRA5 PON2 PHGR1 SFN UQCR11 RRBP1 SPCS3 TSC22D3
61 HSP90B1 MT1G HPCAL1 RGS1 SPOCK2 ITGB2 LMO7 SOCS1 RPS7 MUC13 RPS24 TXN MAP1B GUCY2C HHLA2 MRPL41 CES2 SH3PXD2A TCF4 RCSD1
62 SEC61B H3F3B ENTPD8 SPCS1 CD8A PIK3IP1 CLCA4 CDHR5 UQCRC2 PARP12 RPL36 HIST1H3B PDGFRA TM4SF5 RIOK3 MT2A PLA2G2A MTRNR2L12 SPCS2 NAP1L1
63 IGF1 AC023157.3 ETS2 KLF2 PRMT9 LAT KRT19 ATP5ME CD9 LIPH RPL12 RPL19 THY1 CCT6A MGLL ATP5ME ATP5PF CEMIP2 MANEA APBB1IP
64 IRF4 TPI1 RPL37A CD48 KLRD1 VIM MALT1 CLDN4 DMAC1 MIR194-2HG ANO7 NUSAP1 CYGB CTBP2 SPATS2L ATP5MC3 TXN NXPE1 TGFB1 ZNF331
65 DPP7 MED29 RPL27A TRAM1 THEMIS BCL11B FABP1 ROMO1 MGST2 LRRC1 EPHB3 RPL39 PMP22 ALDH2 LMO7 CYC1 CHP2 KCNQ1OT1 LGALS1 RPS20
66 RASGRP3 HIST1H3G KCNQ1OT1 SEL1L CORO1A STK17B TTC39B NDUFB7 SNRPE MISP PTPRO GAPDH VCAN RPS6KA3 KRT8 NDUFB7 ATP5MC1 ABLIM1 DNAJB1 TCL1A
67 PAIP2B GADD45B SOX4 TSC22D3 TMIGD2 ACTB MT1H CEACAM7 GAPDH C1QTNF12 PDK4 SNRPD2 EFEMP1 FCGRT TMEM54 COX6C S100A10 NKTR IGF1 TMSB4X
68 CYTIP AC245014.3 CLDN3 ICAM3 TNFRSF1B XCL1 VIPR1 POLR2A RPL12 RETSAT KCNE3 EEF1B2 RBMS3 LSM11 SGK2 Z93241.1 COX6B1 MUC13 IGHG1 TCF4
69 DUSP5 AC005920.1 RPS24 CREB3L2 GZMK APBB1IP EDN3 ATP5MC3 RPL8 XDH PLXDC2 G0S2 COL15A1 KLF5 MX1 ATP5PF SLC22A18AS GCC2 SUB1 SERPINB9
70 TPST2 SELENBP1 HEXIM1 GNG7 SYTL3 GPR183 CKB MALAT1 RPS8 IFI27 CKAP4 MKI67 TNS1 LAPTM4A PRDX6 CDX2 PPIC RGS1 RPS27
71 ICAM3 AL118516.1 CLDN4 FKBP2 SKAP1 NKG7 PRR5L LGALS3BP CCT2 ARL14 CENPV RPS3A ABCA8 TSPAN8 MXI1 SQOR MPC1 UBC STK17A
72 EMP3 MUC5B BCAS1 UBE2J1 JAML RAC2 TMEM176B CSTB HACD3 BMP3 STXBP6 ATP5ME TPM2 C15orf48 FXYD3 MYH14 TSPAN1 PDIA6 RPLP2
73 TIMP2 AL021453.1 AKAP9 LY96 ITM2A TNFAIP3 ABCG2 ATP5MD AGR3 RNF213 NR2F2 KIF20B MRGPRF S100A16 DHRS9 PADI2 SFN TIFA GRASP
74 CYBA MEPCE NEAT1 TENT5C MSN JAML MYLK CEBPB BTF3 C2orf88 MBOAT2 RPL24 PREX2 QSOX1 ASS1 UQCRQ DHRS11 TP53INP1 C1orf162
75 TENT5C SRSF7 S100A6 ITGB7 APBB1IP TSC22D3 PRSS12 AURKAIP1 GPR160 GPRC5A FAM3D HIST1H4C GJA1 PLGRKT C3orf85 COX6B1 ATP5F1B TNFRSF18 CTSH
76 FKBP2 TCIM RPL31 TNFRSF18 SLA TNFRSF1B HK2 AL021453.1 ATP5F1A ZZEF1 PABPC1 EGR1 COL1A1 PDLIM1 LINC02023 FAM162A C15orf48 SDF2L1 DDX5
77 TRAM1 POU3F1 EGR1 IRF4 MYBL1 SKAP1 SLC20A1 CSKMT DNPH1 SYTL2 NEDD9 AL137077.2 SERPINF1 ATP5MC1 BMP3 SLC4A4 HSD11B2 MANF RPL21
78 LINC01480 COX5B IER3 SERP1 CD160 GMFG FXYD3 KCNK5 APEX1 SMCHD1 LEFTY1 RPL21 PCOLCE RAB40B MYL12B GPRC5A ATP5PD FAM30A NR4A2
79 EVI2B RPS18 RPL13A PPM1K GPR183 RPS27A LGALS3 LGALS2 GGCT UACA KDELR1 HIST1H2AH APCDD1 PPP1R14B BTNL3 PCK1 COX4I1 DUSP1 HLA-DOB
80 FAM30A CEBPA UBB TXNDC15 CD48 ZNF331 GUCY2C COX7B CDCA7 AAK1 RPL8 RPL34 PLAC9 GSTO1 DDX58 NEAT1 NDUFB2 GMFG BTG1
81 SERP1 HIST1H2BH TSTA3 XBP1 RUNX3 HLA-A PDGFA GAPDH EIF3E COBL EHF ASPM ADH1B ATP1B1 TCF7L2 CSTB GPX2 SEL1L RPS27A
82 IGKJ3 ID2 SLC4A7 ERO1B GLIPR1 FXYD5 EMP1 AC087623.3 TSPAN6 FABP1 CD9 RPL36A FGF2 SLC25A39 LYPD8 DHRS11 BSG CREB3L2 RASSF2
83 ITGB7 AC007613.1 RPL29 BASP1 TRDC HLA-E EEF2K GADD45G EPHB2 SP1 UQCRH ILF3 APOE TMSB10 MYO15B CA12 NDUFA1 CYBA TAGAP
84 BMP6 CDKN1C RPS27 PABPC4 PIP4K2A DDX5 TSPAN1 MT1M EPCAM AHCYL2 RPSA HMGB2 C11orf96 RARRES1 LEAP2 ELF3 MT1E RPL36AL YPEL5
85 ADA2 ID1 LGALS4 HSP90B1 PTPN22 EVL CCDC68 TRPM6 TKT TMPRSS2 TOMM20 LEFTY1 CPED1 ATP5PB SMIM22 AL021453.1 GAPDH HSPA1B RGS2
86 GMFG MT1E RPS12 JUN MATK ETS1 FLNB CAMK2N1 MLEC ASS1 RPLP0 RPLP1 MYL9 TMEM14C CCDC68 TDP2 MAOA NUCB2 MEF2C
87 PDK1 GADD45G VEGFA LINC01480 STK17B RUNX3 ATP1B1 MYL6 RPL6 PCK1 RPL7 RPL3 POSTN MGST2 ATP1B3 VDR PIGR FOSB NFKBID
88 DNAJC3 CHCHD10 SELENOK PPIB RGCC EIF1 MISP AL136040.1 ATIC COL17A1 CDK6 ASCL2 GPC6 PROM2 SLC6A8 NDUFB3 ANXA2 DNAJC3 CD48
89 ERLEC1 COX6B1 MUC5B IGKC DUSP4 TPT1 A1CF ETHE1 YBX1 RIOK3 RPL32 RPS27A LINC01082 PHB2 LAMA1 ATP5F1D RAB25 FKBP2 BCAS4
90 BEX5 KLF4 PRDX5 FBXW7 PPP1R18 ITM2A MUC13 AMN HSPD1 TRANK1 CCND2 HMGB1 FGF7 PRDX3 ARL14 NDUFB1 CYC1 HSPA1A HLA-E
91 CCDC69 AC020911.2 ATP2C2 KLHL6 NR4A2 RPS27 EPCAM UQCRC1 LAPTM4B SHROOM1 AQP1 NAA38 LMOD1 LRRC75A C1orf115 HEXIM1 NDUFB1 SELENOM RPL27
92 EMB HMGB1 CEMIP2 B2M CD28 MSN TST AC020911.2 RPS18 MGLL RPL18 RPS4X PLAU UQCRFS1 FTH1 HMGCS2 CSTB FNDC3A RPL19
93 CD48 AC087239.1 ATP2A3 GPR15 RAB8B IKZF1 MT1G PCK1 RPS3 XRN1 HPCAL1 PPP1R1B GLT8D2 RMND1 MEP1A SLC44A4 ACAT1 CRELD2 ARHGAP25
94 DNAJB9 TXN RPL28 FOS LAT CD8A PHGR1 TPRN ATP5MC3 ZNF326 RPL24 YBX1 CHL1 CD9 AOC1 NDUFA1 FAM213A ICAM3 CREM
95 RHOQ HIST2H2BF SNHG18 DUSP1 RARRES3 RGCC ID4 SLC22A18 RPL23 ENTPD8 ITGA6 ATP5F1D PDGFRB GNPTAB TNFSF10 AC023157.3 COX5A EIF2AK4 PTMA
96 TIFA ATP5F1D GOLGB1 UBC CD6 GLIPR1 TMEM54 CDKN2B PPA2 PKIB RPS3A AGR2 VCAM1 IMPA2 SLC9A3R1 IER5L C19orf70 ARID5B RPL30
97 ITGA4 RPL35 RPL37 DAPP1 RAC2 TUBA1A LAMB3 FLNB SNRPD1 PDCD6IP NUPR1 RPL41 PPP1R14A SLC27A2 S100A6 ATP8B1 ELOB ERO1B PLEKHO1
98 SEL1L H1F0 POU3F1 FNDC3A IL32 JUNB ANK3 SLC44A4 PDZK1IP1 CCDC68 ZDHHC9 TOP2A IGFBP3 AKR7A2 DDX60L MAFB SUCLG1 IGLC2 EIF1
99 KRTCAP2 MT1X RPL8 CD53 RORA CLEC2B ECE1 EZR RPS21 PLSCR1 RPS8 UBA52 DLC1 HDHD2 SLC1A1 TXNDC17 TSPAN8 AC020916.1 IRF8
100 SRPRB PTCH2 ITPR2 IGLV2-14 TIGIT ACAP1 MT2A RASD1 FERMT1 PRSS12 EPHB2 RPL9 SNCG SQOR CGN C19orf70 NDUFC1 PPIB PLEK

separation of epithelial, stromal and immune cells

Cell split