knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p014t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p014t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p014t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5926 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3501 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 3 4 5 6 7 8 9
1 IL7R CD2 MT1H PGGHG CMTM2 CLDN2 UGT2B17 C1QA TNFRSF17 LEFTY1 COL6A1 ITLN1 CCL5 TPSAB1 VWF MYH11 CD300E PKIB BANK1 KLK10 LINC02432 TCL1A MZB1 GZMB ITLN1
2 CD3D CD3D SLC26A3 LINC00665 FPR1 EPHB3 LEFTY1 C1QB DERL3 ADH1C DCN REP15 NKG7 CPA3 RAMP2 NOTCH3 FCN1 SLC26A3 MS4A1 CTSE ARC VPREB3 DERL3 GZMH REP15
3 LTB IL7R MT1G MUC6 FCGR3B AQP5 MT1G C1QC IGHA2 UGT2B17 C1S CLCA1 GZMK MS4A2 CLDN5 CSRP2 EREG MS4A12 CD79A COL17A1 KRT18 MS4A1 TNFRSF17 GZMA CLCA1
4 FYB1 SPOCK2 MT1M AQP5 FPR2 RNF43 MUC12 MRC1 MZB1 C10orf99 MMP2 SPINK4 GZMA HPGDS CLEC14A COL14A1 MIR3945HG GUCA2A TNFRSF13C MUC17 SOX4 IGHD IGLV3-1 NKG7 SPINK4
5 RPS27 CTLA4 C10orf99 AC136475.3 CXCR2 PKDCC HMGCS2 MS4A6A CCR10 PLA2G2A EMILIN1 B3GNT6 CST7 SLC18A2 EGFL7 LMOD1 TLR2 CA4 CD79B S100P GDF15 BANK1 POU2AF1 CCL5 TPSG1
6 CD3G TRAC FABP1 RNF43 AC245128.3 CPNE7 MUC4 MS4A4A IGLV3-1 MUC12 COL5A1 ST6GALNAC1 CCL4 KRT1 PLVAP PLN OLR1 CLCA4 IGHD KLK6 FOXQ1 CD79B IGKJ5 CST7 RETNLB
7 CD3E CD3E UGT2B17 CAPN12 AQP9 PIWIL1 PIGR CPVL FKBP11 HMGCS2 PDGFRA BEST2 HCST KIT CALCRL SLIT3 GPR84 CEACAM7 CD37 ONECUT3 ID4 TNFRSF13C FKBP11 PRF1 KLK1
8 RPS27A ICOS CDHR5 SEC16B S100A8 LYZ MTRNR2L12 CSF1R SLAMF7 NXPE1 MXRA5 ATOH1 GZMM HDC CDH5 EDNRA MARCO TRPM6 LINC02397 TFF1 ELF3 CD22 JCHAIN KLRD1 RAP1GAP
9 RPS15A CD3G SLC26A2 LYZ S100A12 SLC12A2 PLCB4 CD163 JCHAIN B3GNT7 CLMP KLK1 CD8A CTSG SOX18 CSPG4 CSTA GUCA2B HLA-DRA CEACAM6 CLDN4 CD79A SEC11C CD8A BEST2
10 RPS29 KLRB1 LGALS2 CHRM3 PTGS2 CHRM3 NXPE1 FPR3 SPAG4 SULT1B1 COL6A3 FCGBP CD3E RHEX SLCO2A1 ITGA7 VCAN DEFB1 PAX5 MMP7 LYZ FCRL1 AC104699.1 LINC01871 ZG16
11 TXK FYB1 SLC39A5 AC103702.2 ADGRG3 MLXIPL PRKAG2 PLA2G7 PRDX4 MT1G FBLN1 RAP1GAP CTSW CALB2 EMCN LINGO1 LILRB2 MEP1A CD83 MAL2 S100P PAX5 IGHA2 GNLY SPINK1
12 TRBC2 CCR6 HMGCS2 CPNE7 PROK2 PGGHG PLCE1 MSR1 SEC11C MUC4 BICC1 RETNLB CD2 ADCYAP1 PALMD CDH6 IL1A AKR1B10 BLK CEMIP GPX2 BLK SLAMF7 GPR171 WFDC2
13 CD2 CD28 SELENBP1 SLC12A2 G0S2 PRSS33 OLFM4 LILRB4 IGKJ5 MT1M COL3A1 ANO7 KLRD1 LTC4S PCDH17 PDGFRB CPVL SLC51B HLA-DPB1 MSLN RPL12 IGHM LINC02362 CCL4 MB
14 RPL34 FYN PHGR1 MLXIPL TNFAIP6 CDCA7 SELENBP1 MPEG1 ANKRD28 NXPE4 CTSK MUC2 TRBC1 MAOB LIFR PLAC9 NLRP3 PDE9A AFF3 S100A14 KRT8 POU2F2 UBE2J1 GZMM ANO7
15 RPS12 TRBC2 CEACAM7 CCSER1 HCAR3 SLC28A3 AC103702.2 VSIG4 CRELD2 AKR1C3 MXRA8 HEPACAM2 CD3D GATA2 FAM167B BGN CLEC4E CHP2 HLA-DPA1 BACE2 AC103702.2 IRF8 PRDX4 CTSW ST6GALNAC1
16 CCR7 LTB CA2 ONECUT3 S100A9 MUC6 PLA2G2A CMKLR1 IGHA1 IGFBP2 CALD1 NEURL1 DUSP2 RGS13 KDR PPP1R14A AQP9 MT1H VPREB3 MET AC136475.3 AFF3 IGHGP HCST ENTPD8
17 RPL30 CD7 FXYD3 AC020656.2 ACSL1 NOXO1 MLXIP SLCO2B1 POU2AF1 SPINK1 C1R SPINK1 CD3G VWA5A JAM2 MAP1B ACOD1 SDCBP2 CD74 UCA1 MARCKSL1 CD19 CD38 PTPN22 TMEM61
18 RPL21 CREM PLA2G2A EPHB3 C5AR1 PLEKHS1 PCK1 ADAP2 SPCS2 CHP2 COL1A2 ENTPD8 CXCR4 PTGS1 MMRN2 EFHD1 KYNU DHRS11 HLA-DRB1 AC020656.1 CLDN3 CD83 FCRL5 FASLG FCGBP
19 RPLP2 MAF GUCA2A CLDN2 BCL2A1 ONECUT3 HES1 SLAMF8 DUSP5 LGALS4 COL5A2 TFF3 RUNX3 CLNK FAM107A C2orf40 SLC11A1 TMIGD1 HLA-DQB1 TFF2 PHLDA2 FCER2 SPAG4 CD3D HEPACAM2
20 RPL10 TNFRSF4 MT1E TMC5 PLEK TMC5 ELF3 TREM2 UBE2J1 CES2 COL6A2 ZG16 CRTAM HPGD APLNR LDB3 RETN CA1 POU2F2 PERP HES1 HLA-DQB1 CCR10 IFNG MUC2
21 CXCR4 ITK UGT2A3 KNOP1 HCAR2 EPHB2 XIST STAB1 SSR3 MAOA POSTN GALNT8 PARP8 SMIM1 CYYR1 TBX2 FPR1 EDN3 HLA-DRB5 CA9 C2CD4B HLA-DOB XBP1 CD3G ATOH1
22 RPL19 TNFRSF18 MUC12 OLFM4 AL034397.3 FAT1 FRYL CD86 TXNDC15 CLDN3 CDH11 BCAS1 ZFP36L2 CD9 LDB2 ASPN CLEC5A LINC02023 HLA-DQA2 LCN2 PODXL2 HLA-DQA2 ANKRD28 ZNF683 IGFBP2
23 TRAC CNOT6L MT1F NBEAL2 IL1B PLPP2 SOX4 CD209 SDF2L1 EPCAM AEBP1 PRUNE2 TMSB4X CLU THSD7A FHL5 ASGR1 PPP1R14D CD52 KLK11 RNF43 HLA-DRA SSR4 CD2 TFF3
24 TPT1 AC058791.1 PIGR PPP1R9A NCF2 LGR5 MS4A7 SPCS3 CDX1 HTRA3 RAB26 CD160 CSF1 ROBO4 CRYAB EMILIN2 VSIG2 FCER2 MUC13 SOX9 HLA-DPA1 AC104024.1 LINC02446 GALNT8
25 RPS3A BCL11B PCK1 EHF CLEC4E ATP1B1 SLC1A3 SSR4 SELENBP1 NNMT TPSG1 CD247 ALOX5 CD34 HSPB6 NCF2 SELENOP LINC00926 BMP4 RHOB HLA-DPB1 GNG7 LAG3 VSIG2
26 RPL32 SRGN SMIM24 SLC28A3 TYROBP LCN2 FOLR2 CD38 SLC39A5 SULF1 PCLO RARRES3 SMYD3 TM4SF18 SLC7A2 CD163 C10orf99 MARCH1 DSG2 RPL36 HLA-DRB1 DUSP5 MATK ANXA13
27 RPS28 CD4 AMN FAT1 MNDA AGR2 RNASE6 MEI1 MT1E CXCL14 SPDEF GZMH RAB32 FZD4 MYL9 TREM1 MUC12 LAPTM5 LEMD1 HIST1H2BG CD37 EAF2 APOBEC3G B3GNT6
28 ARL4C TNFAIP3 SULT1B1 TBX3 MIR3945HG S100P GPR34 FKBP2 PLCB4 IGFBP5 WFDC2 PTPRC TRPM5 TIE1 MYLK CD14 SULT1B1 CD19 TMC5 RPS2 CXCR5 JSRP1 XCL2 AC005833.1
29 JUNB PTPRC CES2 ZNF891 NAMPT FERMT1 GPNMB SPCS1 FAM3D LSAMP HSD11B2 TRDC AKAP12 PREX2 GJA4 C5AR1 CDHR5 KLF2 SLC40A1 PGGHG CD72 SDF2L1 GZMK SPDEF
30 PIK3IP1 S100A4 MS4A12 AGR2 IL1RN CAPN12 LAIR1 MANF AGR3 COL1A1 SYTL2 TSC22D3 TMEM176B SHANK3 HEYL MS4A4A SLC26A2 RALGPS2 TMEM45B TMC5 HLA-DRB5 CPNE5 FGFBP2 NEURL1
31 RPL9 LCK CA1 WDR60 TREM1 BMP4 LRRC25 HERPUD1 AMN SNAI2 SERPINA1 CD7 VEGFA ADGRL4 MGP CSF1R PRSS3 CXCR4 ASS1 ATP1B1 BACH2 RAB30 LCK SERPINA1
32 CD48 RORA HSD11B2 ERN2 SMIM25 AFAP1-AS1 APOC1 XBP1 GOLM1 PCOLCE L1TD1 IFNG LEFTY1 LINC01235 GUCY1A1 IL1RN FABP1 BTG1 KRT19 EPHB3 HLA-DQA1 SPCS3 CD52 FAM3D
33 BCL11B FOXP3 MT1X PKDCC FFAR2 GMDS RASSF4 TENT5C PHGR1 ISLR MLPH TRBC2 LEO1 FAM110D RCAN2 DNAAF1 MT1M TCL1A TSPAN8 JUN LINC00926 SSR3 CRTAM URAD
34 SARAF SARAF CKB FERMT1 AIF1 MYRF LILRB2 AC104024.1 PIGR LAMA4 FAM83E APOBEC3G ACOT7 KANK3 ABCC9 AIF1 AMN IRF8 PLPP2 MYO6 FCRLA FKBP2 CD3E FABP2
35 GIMAP7 TRBC1 CLDN3 PYGB SLC25A37 ZNF891 CYBB RAB30 CD24 PDPN KIAA1324 PTPN22 NSMCE1 RASIP1 ARHGEF17 LILRB4 UGT2B17 FCRL1 REG4 SLC12A2 LY86 CREB3L2 TRGC2 REG4
36 RPL11 TMSB4X CES3 MYO6 CXCL8 ZNRF3 SLC8A1 IGKV4-1 LGALS2 SERPINF1 VSIG2 RGS1 STXBP6 PCAT19 TNS1 RNASE2 CA2 FCMR ATP1B1 AGR2 GPR18 PIM2 TRAC TCEA3
37 BTG1 CRYBG1 TSPAN1 AHI1 NLRP3 UGT8 SIGLEC1 CREB3L2 UGT2A3 PLAT HID1 PIP4K2A TMEM176A TEK FRZB CCL3L1 TSPAN1 CD22 LYZ SMIM22 RHOH IGKV3-20 CD7 LGALS4
38 TSC22D3 ETS1 LGALS4 CCNL2 MGAM EHF VMO1 CLPTM1L TMEM54 RBP1 MUC4 SRGN ACSL4 SOX17 CARMN S100A12 AOC1 IFT57 PRSS3 KRT19 CD74 TENT5C HOPX KRT18
39 SPOCK2 ZC3H12D CHP2 ATP2C2 CSF3R AC103702.2 C3AR1 EAF2 DHRS11 FSTL1 FAM3D GPR171 GRAP2 ERG GJC1 AC245128.3 CDKN2B-AS1 SMAP2 ANXA3 PIGR HLA-DMB HERPUD1 PTPRC CDC42EP5
40 RPS16 TIGIT VSIG2 GPATCH2 KCNJ15 ITGA6 IGSF6 CD79A KLF5 DDR2 GALNT5 TRAC PSTPIP2 CXorf36 ACTA2 IRAK3 KRT20 RPS27 DPP4 AC005920.1 CD52 SPCS2 SLA MUC4
41 RPS14 ARHGDIB PDE9A ZKSCAN1 OLR1 GPX2 SLC15A3 SELENOM CA2 ABI3BP B4GALNT2 BTG1 GLUL NPR1 FOXS1 CFP FXYD3 LINC01781 AGR2 EPPK1 LAPTM5 IGHV3-23 SLA2 KIAA1324
42 LEF1 SKAP1 CD24 TRIM2 IL1R2 TRIM2 SLC16A10 SELENOS TSPAN8 GPC6 CRACR2B PRF1 CAPG ARHGEF15 KANK2 PLAUR GPA33 CCR7 SFN RPS19 STAP1 TXNDC11 CD96 GALNT12
43 RPL35A GMFG PLCE1 LCN2 BASP1 AC020656.1 SIRPA GNG7 TCEA3 NEGR1 REG4 LINC01871 EGR1 ADGRF5 C11orf96 CCL3 CCL28 CXCR5 EGLN3 CKB BCAS4 PRDM1 LCP1 PHGR1
44 PTPRC RGS1 SELENOP SYNE2 CXCR1 OLFM4 AIF1 SEC61B CDC42EP5 PAPPA WNK4 HLA-C TNFSF10 EXOC3L2 CALD1 ASGR2 SLPI LY86 HMGA1 HES6 TLR10 CD79A CD8B CLDN3
45 RPL28 RNF19A KRT8 GOLGA8A OSM PROM1 TYROBP NUCB2 GPT BMP5 FMOD HLA-A LAPTM4A AFAP1L1 GUCY1B1 PTGS2 ARL14 BACH2 FAT1 C19orf48 MEF2C IGKV4-1 RUNX3 SMIM22
46 RPL38 CD247 KRT19 XIST LST1 TNS4 F13A1 ERLEC1 SMIM22 ALDH1A3 NEDD4L CD69 IER2 CAVIN2 RERGL TNFAIP2 C15orf48 RPL21 CDH17 PLPP2 FCMR ERLEC1 TMSB4X CLDN4
47 RPL13 CLEC2D NXPE1 DSP GK CFTR PTAFR IGKV3-20 CLDN4 LUM ERN2 TRAT1 ARHGEF6 ZNF385D S1PR3 EPB41L3 CLDN23 SNX2 MUC2 HIST1H2AC EBF1 CRELD2 RARRES3 RNASE1
48 RPL23A SMAP2 AOC1 GMDS IGSF6 SCG5 FCGR3A AC104699.1 LGALS3 TMEM119 TCEA3 EMB ALOX5AP AQP1 CAP2 HCK PLAC8 EZR KRT8 IFI27 TMEM156 SPATS2 IL2RB BCAS1
49 RPS13 STK17B ITM2C MKI67 ITGAX LRP4 CLEC7A IGHV3-33 KRT8 COL11A1 FSIP2 ITM2A AREG GNG11 MCAM IGSF6 DHRS9 REL SLPI RPS18 LINC01857 IGHV3-30 SYTL3 KRT8
50 RPS4X PBXIP1 MT2A BAZ2B LCP2 MUC5B HAVCR2 TXNDC11 SLC44A4 RARRES2 FRYL GNLY CTNNBL1 INHBB CAV1 LILRB3 C1QTNF12 RPS23 POF1B TBX3 BTG1 MEI1 APOBEC3H TM4SF5
51 RPS26 CD5 ADH1C ARGLU1 IVNS1ABP MYO10 CD14 ALG5 MT1H COL12A1 FOXA3 MALAT1 MUC12 FLT1 HIGD1B HRH2 TST MEF2C TRIM29 TPM1 CD40 IGHG2 XCL1 L1TD1
52 ZFP36L2 CYTIP PADI2 CD46 VNN2 CEMIP MERTK MIR29B2CHG KRTCAP3 TSPAN11 PHGR1 RGCC SLC25A36 AL583785.1 NEXN RAB31 TMEM54 HLA-DQA1 PDZK1IP1 RPS15 HLA-DOA SEC61B CD247 B4GALNT2
53 RPS21 ITM2A MUC4 REG3A ADM IMPDH2 ENPP2 CYBA ELF3 SPARC GNE XCL2 NUPR1 MYCT1 LHFPL6 MEFV PLA2G10 NR4A2 PKP3 HIST3H2A SNX2 TXNDC15 SH3BGRL3 RASD1
54 RPS20 GPR183 PRSS3 AC015912.3 ZKSCAN1 CD300A PRDM1 OLFM4 FENDRR LGALS4 LYAR LMO4 FGD5 ACAN MPEG1 CES2 FAU SERPINB5 TCIM LYL1 HSP90B1 TRBC2 CREB3L1
55 RPL3 CD6 CLDN4 SAMSN1 MECOM PILRA PIM2 ITM2C NTM IGFBP2 AC026979.2 GPX4 DOC2B PGF TYROBP SLC17A4 TXNIP TM4SF4 AC020656.1 SPIB IGHG3 EMB ELF3
56 TOMM7 SLA TLCD2 MME PYGB CD4 ICAM2 SRI WISP1 GALNT12 SYTL3 UBB HSPA12B CASQ2 SIRPA HSD17B2 JUND TCN1 H1F0 SMAP2 SPCS1 LAT KLF4
57 TRBC1 RPLP1 SLC44A4 STEAP4 TSPAN8 MPP1 CD27 VSIG2 COL8A1 ARFGEF3 ETS1 SYAP1 PTPRB SEPT4 RNF144B HSD11B2 RPLP2 RNF128 HIST1H2AH MARCH1 CLPTM1L ITGA1 IFI27
58 RPS3 ARL4C SMIM22 SAT1 HMGA1 EMILIN2 FCRL5 GPRC5A PRICKLE2 CDC42EP5 LCK HEXIM1 TMTC1 PDLIM3 MS4A6A CDHR2 RPS27A KRT18 HIST1H2AG PEG10 IGHV1-24 SH2D2A FOXA3
59 RPL14 CXCR4 ELF3 FTH1 TGFBI TFEC KLHL6 PKP2 PTGDS RNASE1 FYB1 CD63 F2RL3 DACT3 SMIM25 MT1F RPS11 SLCO4A1-AS1 OLFM4 REL PDK1 CLEC2B NUPR1
60 CD7 TBC1D4 MTRNR2L12 SRGN AC136475.3 LINC01094 SEL1L EDN3 MYL9 URAD HOPX ARHGAP18 LIMS2 SYNPO2 CCRL2 BTNL3 LTB GPX2 GAPDH SWAP70 ELL2 APBB1IP FXYD3
61 ITK TSC22D3 HES1 LILRB3 DMBT1 KCTD12 TMEM258 NUPR1 THY1 SCNN1A CD52 PLIN2 NOVA2 EHD2 CD93 SERINC2 RPS20 SPNS2 TMEM238 LTB IGHA1 FYN RAB26
62 RPS23 BTG1 TMEM54 CLEC7A NEBL SLC7A7 DNAJC3 GPR160 CTGF FUT6 XCL1 RGS2 COL15A1 HSPB7 GK SCNN1B ADAM28 FA2H S100A6 DAPP1 SDC1 CORO1A SLC9A3R2
63 EIF1 AAK1 FAM3D LRRK2 PHLDA1 SPI1 HSP90B1 SLPI PCDH18 WNK2 RPS27 JUN S1PR1 CNN1 FAM49A LAMA3 RPL23A ITGA6 FERMT1 CXCR4 SEL1L ZAP70 TPM1
64 RPS6 LAIR2 CCL28 SLC2A3 PLXNB1 CD68 ISG20 TFCP2L1 MRC2 AC103702.2 GIMAP7 HSPA1B PLCB1 AOC3 ACSL1 SFN BCAS4 CEACAM1 MUC5B RALGPS2 MANF EOMES HSD11B2
65 RPL37 TPT1 TFCP2L1 ICAM1 PIGR HLA-DOA PDIA6 PRSS3 WNT5A CBFA2T2 DDX5 SOCS1 MGP COX4I2 SPI1 TMPRSS2 GRASP LGALS3BP VEGFA LINC02397 MANEA RAB27A PADI2
66 DDX5 GATA3 ANPEP PPIF MACC1 SIGLEC10 KRTCAP2 TMEM238 CCDC80 KRT18 PIK3R1 PPP1R15A PCDH12 NDUFA4L2 C1orf162 B4GALNT3 SCIMP GOLM1 ID1 PXK MIR29B2CHG DUSP4 SCNN1A
67 RPLP1 LINC00513 LGALS3 LITAF ETV4 CLEC10A TMEM59 TMEM176B ITGA11 VIPR1 GZMB LMNA FAM69B SPARCL1 ADGRE2 CDH17 LINC01857 TSPAN1 CCSER1 LY9 IGLV2-14 TRBC1 AGR2
68 CD28 RAC2 GUCA2B SPI1 ZNF703 SLC31A2 SPATS2 KRT19 GLT8D2 HMGCS2 HLA-E NR4A1 RAPGEF3 GPR20 CYBB PI3 RPL9 TM4SF1 MAP7 RASGEF1B IGLL5 ITGAL WNK4
69 MALAT1 ZNF331 AKR1C3 ALOX5AP TEAD1 GAL3ST4 DDOST UGDH EFEMP2 ELF3 FYN ELF3 SELP FOXC2 HPSE CLDN3 RPL11 PKM PPP1R1B ADAM28 SELENOS S100A4 CAMK2N1
70 ETS1 GIMAP7 EPCAM CFD LINC02432 LILRB5 SDC1 FXYD3 ALKAL2 NXPE1 ARHGDIB FOSB ACKR1 FILIP1 CXCL2 PHGR1 RPL32 CDH1 LCN2 CYBB TPST2 ITM2A CRACR2B
71 TXNIP CD40LG GGT6 IER3 EPB41L2 SDS IGLV2-14 CDX2 CYGB AGR2 ITGAL AC020916.1 PIK3R3 CAVIN3 MS4A7 LGALS2 RPL30 SERPINB6 ONECUT3 IFT57 ICAM2 ARHGDIB PLA2G10
72 SRGN SAMSN1 TST GLUL BACE2 HLA-DMB TRAM1 PLA2G10 LOXL2 RASD1 DNAJA1 OLFM4 TMEM255B C1R ITGAX PLS1 CD69 EPCAM PERP SCIMP CYBA TRAT1 PCLO
73 FAU PIK3IP1 SLC4A4 MMP25 ASCL2 FGL2 ITM2C SATB2 EMID1 MTRNR2L12 CCL4L2 CKLF ZNF366 CAV2 PILRA DSC2 RPL13A AK4 EGR1 NFKBID KLHL6 RASGRP1 PPDPF
74 RPL27 PHTF2 NXPE4 IRAK3 DPP4 PLTP TRIB1 CCL28 THBS2 CLDN3 TNFAIP3 CD69 NUAK1 AKAP12 SOD2 MISP TSC22D3 MISP CDC42EP5 BASP1 CD27 CD160 FMOD
75 AC026979.2 TOX2 PRSS8 FGR PROX1 SH2B3 JSRP1 SEMA6A COX7A1 KLF4 STK17A ANXA1 NOS3 ECM2 LST1 KRT19 RPL34 TFF3 RASD1 CD53 ST6GAL1 STAT4 NANS
76 CD69 LAT GOLM1 GCA LAMB1 CCL13 TPST2 RARRES1 PODN ATP2C2 IL7R SOX4 TSPAN7 RBPMS2 IL1B SMIM22 RPL19 S100A6 S100A14 RBM38 TRAM2 CNOT6L C10orf99
77 RPL27A IL2RB GPA33 PLAUR ETS2 CTSB SRM TSPAN6 PLEKHH2 TPM1 AKNA MARCKSL1 PTPRM C1S S100A8 HHLA2 HERPUD1 TMEM54 HOXB7 RPS27 TRIB1 SCML4 TCIM
78 RPL13A ARID5B LEFTY1 SERPINA1 REG3A DAPK1 RPN2 CLDN15 EDNRB PLCB4 H3F3B NFKBIZ BCAM RGS5 MMP19 TMEM37 RASGRP2 SCD HEXIM1 LAT2 ADA2 CD6 ERN2
79 ICOS IL2RA MAOA NEAT1 REG1A LIPA PPIB MPST ANTXR1 SLC44A4 SLA RGS10 COL4A1 C1QTNF1 STX11 MT1G RPS3A ANXA2 GOLM1 RPL21 ITGB7 TNFAIP3 PRUNE2
80 KLRB1 TNFSF8 STAP2 LCP1 YAP1 APOE SUB1 GPX2 SGCD CREB3L1 CD48 PRDX5 SPARCL1 RNF150 MNDA MAOA FAM30A SEMA3B IER5L BTLA IGHG4 CXCR6 COL16A1
81 UBA52 GPRIN3 TMEM238 CSF2RB DSG2 TLR2 IGHV3-30 ACADS FIBIN IFI27 ID2 GPX2 CLEC1A ANGPT1 LILRA2 FABP2 TCF4 LMO7 RPL13 HLA-DMA FBXW7 AOAH TMEM238
82 RPL24 RPS27 MISP CEBPB PKM FCGR1A LMAN1 ATP8B1 GJA1 AKAP9 IKZF3 MYADM ENG FXYD1 TNFSF13B CGN EEF1B2 PITX1 USH1C EZR IGHG1 HLA-C MT1G
83 RPL5 CD27 MIR194-2HG DGAT2 ADAP1 SIGLEC7 LY96 COX5B FOXF1 RRBP1 EVL NR4A3 TNXB DES CLEC7A ADH1C HLA-DMB AGR3 WDR60 ST6GAL1 IGKC PARP8 MLPH
84 RPSA RGCC CDC42EP5 CYP4F3 ARFGEF3 MFSD1 PDK1 FABP1 C11orf96 TCIM CNOT6L MALAT1 ARHGAP29 EGFLAM C3AR1 AQP8 RHOH ABHD2 ITGA6 RPS20 IGHV3-7 PFN1 FRYL
85 RGCC CXCR6 FZD5 FTL SOX9 CCR1 FNDC3A MT1F FRMD6 NUPR1 RPS29 MLXIP GPR146 C1QTNF2 ZNF385A C2orf88 SELL FHL2 EHF RPS11 ISG20 EVL AC103702.2
86 JUND RPS15A KRT20 THBD MET ADGRE2 OSTC PPP1R1B NDN DSP CMC1 H3F3B SHROOM4 PRELP CD300LF GPRC5A RPS21 S100A16 REG1A CD69 NUCB2 RGS1 PIGR
87 RPS7 RPS29 CAMK2N1 SCARF1 GNPAT GNB4 LMAN2 SLC4A4 ADAMTS2 GMDS SCML4 SAMSN1 NRN1 CAVIN1 CXCL3 EPCAM RIPOR2 GAPDH RPL29 STX7 TP53INP1 DUSP2 SLC44A4
88 FYN RPS27A PLAC8 S100A11 APP HLA-DQA1 SELENOK TST LOX ATP2A3 MYL12A FDX1 TMEM204 SERPING1 PLEK SLC44A4 RPS29 FXYD3 RPL35 AC004687.1 TMEM258 ARL4C HMGCS2
89 FKBP5 IL18R1 CGN CASS4 CERS6 TNFSF13B CNPY2 RNF186 APOD CDX2 DUSP4 TUBA1A ADCY4 MFGE8 FGR ALDOB RPL18A H1F0 MYO10 FAU DNAJC1 ANXA1 AGR3
90 CYTIP ANKRD12 ARL14 TLR2 EEF2 ZNF385A ELL2 FCGRT LTBP2 SH3PXD2A EIF1 GPR65 TLL1 COL18A1 FGL2 CES3 CD53 AFAP1-AS1 HSPA1B HERPUD1 BCL2L11 ARPC2 NEDD4L
91 TMSB4X CD52 S100A6 DUSP1 SH3D19 C5AR1 IGKC DENND2A SRPX2 PAWR SRSF2 HES1 WWTR1 TAGLN CD68 TJP3 STX7 AQP5 EPS8L3 CCR7 PPIB MSN NXPE1
92 CD52 JUNB IFI27 RGS2 ERN2 NCF2 TMEM208 PPP1R14D SERPING1 SMIM22 NR4A2 AKAP13 TSPAN18 RASL12 BCL2A1 SELENBP1 DAPP1 PLS1 AFDN SNX29 TRAM1 ADGRE5 ATP2C2
93 RPL10A RPS4X CDH17 TNFRSF1B LRIG1 EPB41L3 DNAJC1 LCN2 TRPA1 CLMN SH3BGRL3 VIM HECW2 COL4A2 S100A9 MUC13 PEG10 LSR NRARP KLF2 SEL1L3 FYB1 ITM2C
94 SELL EIF1 ATP8B1 SOD2 PKP3 FCGR2A SERP1 PBLD BGN PRKAG2 CYTIP RAC2 ADGRL2 TGFB1I1 FCER1G KRT8 RPSA TCF7L2 RPL31 LYN CPEB4 GIMAP7 EPCAM
95 ZNF331 RPS26 SFN SDCBP CCSER1 MMP19 RABAC1 SUCLG1 IGFBP7 SOX4 SARAF GADD45G CRIP2 CCDC3 CD86 CYP3A5 P2RY10 SLC6A8 CDX2 TCF4 SUB1 CXCR4 MAP7
96 CREM DDX5 ACADS TNFAIP3 PPP1R9A RAB31 C12orf45 COX5A FNDC1 CHCHD10 ARL4C SELENOK CAV1 KCNJ8 FCGR3A CLDN4 EIF1 KCNK1 TRIM44 GGA2 EIF2AK4 RGCC S100A6
97 IKZF1 DUSP16 TCEA3 LYN REG1B THEMIS2 SEC62 TXN MEIS3 GOLGB1 LCP1 MMRN1 COL6A1 SLC7A7 ITM2C JUNB SLC7A11 TSPAN8 RCSD1 KRTCAP2 BCL11B CHCHD10
98 SMAP2 IKZF1 CDX1 CCL3L1 GPR35 RGL1 DPP7 SI MAB21L2 PPDPF BCL11B RBP5 SGCA OSCAR BTNL8 MTPN TMPRSS2 MYH14 RPS23 PDIA4 PIP4K2A XBP1
99 TIGIT IL32 CISD3 IL1A KCNN4 SLC37A2 HAX1 MPC2 CFH JUN AC044849.1 AP001528.2 COL6A2 ITGAM PRSS8 ELF1 QSOX1 ZNF703 TMEM131L H1FX PIK3R1 WNK2
100 GPR183 CELF2 LSR ITGAM KNOP1 LST1 SRPRA NANS EFEMP1 ZNF331 FILIP1 A2M RIPK2 TMEM176B RPL27 MYH14 IER3 PPM1K ITM2C COTL1 RPL36

separation of epithelial, stromal and immune cells

Cell split