knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p014n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p014n"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p014n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5050 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2956 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 26 3 4 5 6 7 8 9
1 IL7R OLFM4 SELENBP1 ADH1C ITLN1 CLCA1 TFF1 TRDC DERL3 SLC9A3 MS4A1 ITLN1 SPINK4 PLCE1 TK1 IGFBP7 AFF2 TCL1A CPVL DMBT1 MZB1 DERL3 CA1 AQP8 BEST4 TRIM31 SH2D6
2 CD3D TMSB10 UGT2B17 LEFTY1 CLCA1 REP15 FER1L6 KLRD1 SLAMF7 AQP8 BANK1 REP15 ITLN1 UGT2A3 GINS2 SPARCL1 AICDA LMO2 MS4A6A CA7 TNFRSF17 TNFRSF17 SLC26A2 C11orf86 OTOP2 CLCA4 HPGDS
3 CD2 SOX4 CD24 KRTCAP3 SPINK4 ITLN1 IL3RA TRGC1 TNFRSF17 SLC26A3 VPREB3 KLK1 KLK1 OLFM4 TYMS A2M LINC01991 MME CSF1R NOTCH2 DERL3 MZB1 SLC51B ABCG2 CA7 ABCG2 PSTPIP2
4 CD3E GPX2 UGT2A3 EBPL REP15 KLK1 TBX10 GZMB MZB1 SLC26A2 CD83 CLCA1 REP15 KNOP1 CDT1 MGP MME RGS13 CLEC10A SPIB FKBP11 SLAMF7 SLC9A3 SLC9A3 OTOP3 AQP8 TRPM5
5 CD3G TXN CA1 SLPI MUC2 MUC2 MINPP1 CD160 IGLL5 CEACAM7 CCR7 SPINK4 CLCA1 AL390719.2 FAM111B SPARC TCL1A DTX1 IGSF6 UNC5C JCHAIN CCR10 KRT19 EMP1 DMBT1 RSAD2 BMX
6 KLRB1 MT1G ADH1C STEAP1 KLK1 SPINK4 MUC2 KIR2DL4 AC104699.1 ANPEP TNFRSF13C MUC2 RNASE1 AC103702.2 HELLS IGFBP5 PEG10 CXCR5 CD163 OLFM4 IGKJ5 FKBP11 CDKN2B-AS1 TRIM31 HES4 SELENOP COL27A1
7 TRAC EGR1 PIGR FERMT1 ST6GALNAC1 MLPH ANKRD36C NKG7 MEI1 EMP1 HLA-DPB1 SPINK1 RAP1GAP ABR MKI67 TIMP3 AC023590.1 MS4A1 MS4A4A NBPF14 SLAMF7 IGHA2 SLC26A3 RHOD ADCY5 GUCA2B PTGS1
8 TRBC2 CHCHD10 NAALADL2 PPP1R1B RNASE1 TFF3 RASEF HOPX FKBP11 SLC37A2 HLA-DQB1 DLL1 SERPINA1 MUC4 ORC6 CALD1 MYBL2 CD22 VSIG4 CPA6 IGHA2 LY96 FLNB OASL SPIB EMP1 OGDHL
9 CXCR4 PIGR SLC26A2 MGST2 TFF3 ANO7 MLPH CCL5 CD38 PLCD3 HLA-DPA1 RNASE1 MUC2 NXPE4 MCM4 COL4A1 RGS13 GCSAM CLEC7A BEST4 SEC11C SPAG4 C1QTNF12 CDA CA4 SLC9A3 SH2D7
10 SLA CYC1 PLCE1 OLFM4 SPINK1 FCGBP ZG16 LINC01871 GNG7 MS4A12 HLA-DRA SERPINA1 TFF3 UGT2B17 E2F8 CAVIN1 MND1 SERPINA9 FPR3 NEURL1 PRDM1 PRDX4 CA2 RHOF MEIS1 HPGD HCK
11 TRBC1 MT1E CBR1 RAB25 FCGBP RAP1GAP LINC01559 CST7 CCR10 CEACAM1 IGHD TFF3 TPSG1 PRKAG2 ASF1B PLAC9 BACH2 CD19 MNDA RHOV FCRL5 IGKJ5 CEACAM7 HPGD CDK18 SLC26A3 HTR3E
12 SPOCK2 SELENBP1 PAPSS2 AKR1C3 BEST2 ST6GALNAC1 DDX60 TMIGD2 PRDM1 GUCA2A LY86 ST6GALNAC1 ST6GALNAC1 ZRANB2 UHRF1 ITIH5 SERPINA9 AC108206.1 P2RY13 NBPF19 SSR4 MEI1 FABP1 SLC26A3 MYOM1 ANPEP AZGP1
13 PTPRC GOLM1 GPT FABP5 ZG16 BEST2 GPR153 LAYN CD79A TMIGD1 MARCH1 RAP1GAP SPINK1 PIGR CENPU COL14A1 DTX1 AL512631.1 LILRB2 SIPA1L2 CCR10 SEC11C ADIRF SULT1A2 PCSK1N CDHR2 ALOX5
14 CD69 PPP1R1B DDAH1 GPX2 ANO7 RNASE1 SMIM5 XCL2 TXNDC15 CA1 HLA-DRB5 FCGBP SPDEF MIR194-2HG CLSPN CAVIN3 RFTN1 EVC2 TLR2 MEIS1 TENT5C IGLV3-1 KRT20 GUCA2B MT1H CLDN23 B4GALNT4
15 CD28 ATP5F1D AC103702.2 TRABD2A RAP1GAP SERPINA1 CDC42EP3 GPR171 IGHA2 ETNK1 HLA-DRB1 SPDEF CREB3L1 XIST ASPM RBPMS MYBL1 VPREB3 SIGLEC1 NBPF26 SSR3 ICAM2 TMEM54 CLCA4 C2orf54 MUC17 LRMP
16 FYB1 PYCARD GOLM1 C1QBP MLPH SLC4A7 SYT7 CD96 IGLC7 COL17A1 COL19A1 RETNLB FCGBP MLXIP E2F1 COX7A1 RMI2 FCRLA CSTA CCND1 POU2AF1 AC104024.1 MS4A12 TMIGD1 RHCG PTPRR HTR3C
17 BCL11B HES1 BCL2L15 MGST3 TPSG1 ATOH1 SPNS2 PRF1 MANF SLC51B GPR183 CREB3L1 REG4 DIAPH2 CENPW EHD2 KIF11 BACH2 FCGR1A CTSE ANKRD28 TXNDC15 PHGR1 CDHR2 FRMD1 SMPD1 GNG13
18 HCST MT1X CES3 IGFBP2 AGR2 MUC4 TM4SF5 GNLY POU2AF1 PLAC8 PAX5 REG4 ATOH1 CENPF NUSAP1 LMOD1 CD22 HTR3A SLC1A3 ADCY5 SPAG4 MANF KRT8 SELENOP PRKG2 MUC12 CCDC129
19 SRGN IGFBP2 ATP8B1 C15orf48 HEPACAM2 ERN2 GSN ITGA1 SEC11C C11orf86 CXCR4 ZG16 BEST2 MKI67 CENPK HTRA1 NCAPG PAX5 C1QA PROX1 XBP1 SPCS2 SFN RSAD2 UNC5C SECTM1 AFAP1L2
20 LTB MAFB SIAE GMNN SERPINA1 RAB26 SYTL5 GZMA RAB30 MIER3 LAPTM5 HEPACAM2 MB TPX2 RBMS3 GCSAM TNFRSF13C MPEG1 GMNN VIM CRELD2 SLC37A2 CLDN23 GUCA2A OASL DCLK2
21 GIMAP4 UGT2B17 MAOA NFIB ERN2 SPINK1 TRANK1 CD7 PRDX4 MUC12 CD52 TPSG1 GNE RAD51AP1 PLAT TUBB2B AC023590.1 AIF1 HES4 MANEA TPST2 SELENBP1 CEACAM7 DOCK4 CDA CD300LF
22 CD7 TMEM238 CA2 PLBD1 ATOH1 SYTL2 CD177 TRGC2 CRELD2 FLNB LTB ERN2 TMEM61 CDCA7 GNG11 GINS2 CD72 C3AR1 DIAPH2 CREB3L2 AC104699.1 BSG GUCA2A MT1G ENTPD8 IL17RB
23 S100A4 PRDX5 FABP1 ARSE KIAA1324 GALNT5 MUC13 CD3G ICAM2 SLC6A8 CD22 MUC4 AGR2 TIMELESS SERPING1 BIRC5 TMEM131L C1QC SHTN1 GNG7 MANEA TPRN CEACAM1 GUCA2B GUCA2A CGNL1
24 ARL4C AC103702.2 CES2 DEGS2 SPDEF WNK4 BEST2 XCL1 SPCS2 CLCA4 CD37 ATOH1 ZG16 ATAD5 C1S CXCR5 IRF8 NFAM1 PRKAG2 DUSP5 SSR3 CES2 PLAC8 CEACAM1 COL17A1 GRK5
25 FYN ATP5ME SLC4A4 TSPAN6 MB PRUNE2 ENTPD8 IL2RB SRM CDHR5 FCRL1 ANO7 FMOD C21orf58 LIFR CLSPN RFTN1 CD93 HEPACAM2 KLHL6 SPCS3 LGALS3 ANPEP CCNYL1 SDCBP2 PLCG2
26 ARHGDIB CDX1 MAVS SLC44A3 WNK4 L1TD1 DST SLA2 CLPTM1L AHCYL2 AFF3 WNK4 AC005833.1 AURKB COL6A2 UCHL1 CCDC85A C1QB NEO1 UBE2J1 UBE2J1 ETNK1 CEACAM5 NEURL1 PLAC8 FYB1
27 CD52 MLEC HADH MYB GNE DLL1 SYTL2 CD247 PIM2 CHP1 POU2F2 MLPH WFDC2 MELK MYL9 VNN2 FCRL3 PTGS2 WNK2 CD27 SDF2L1 ANPEP MUC12 ADRA2A CEACAM6 POU2F3
28 ZNF331 HSPA1B GPX2 PTGR1 CBFA2T2 NEURL1 SPATS2L SIRPG AQP3 PLS1 HLA-DMB AGR2 CDC42EP5 XRCC2 C11orf96 PAX5 KLHL14 CLEC4E LAMB1 HERPUD1 DUSP5 AHCYL2 SDCBP2 CEACAM6 TMEM37 AVIL
29 CD40LG ATP5MC3 MIR194-2HG RAB32 CREB3L1 CRACR2B SDR16C5 CD3D SSR3 LRRC19 CD79A BEST2 DLL1 FOXM1 COL3A1 CDCA2 HLA-DMB TLR8 ZNF814 PRDX4 CD79A FXYD3 MISP SCIN C11orf86 CCSER1
30 CD6 CD24 HSD11B2 ESD RETNLB RETNLB FCGBP CD3E ANKRD28 CD177 CNR2 CDC42EP5 RETNLB MCM7 NNMT FANCI CD79B MSR1 CDK18 SPCS3 EAF2 CD24 PRSS3 CTSE GPRC5A DKK3
31 CREM KLF5 SULT1B1 SUCLG1 SYTL2 HEPACAM2 SERPINA1 TIGIT CSF2RB SFN HLA-DQA2 L1TD1 HEPACAM2 NCAPH LAMA4 CENPU BCAS4 CD209 MUC5B AC104699.1 JCHAIN PLCD3 SECTM1 MT2A CEACAM7 KIT
32 GIMAP7 MAOA MUC4 AKR7A3 MUC4 SLC12A2 SAMD9 CCL4 ADA2 SGK2 LINC01857 WFDC2 MLPH PCNA CRIP2 FCRLA TLR10 ITGAX GNPTAB CD79A IFNAR2 SULT1A1 CEACAM6 CKB CGN TAS1R3
33 LAPTM5 COX5B ABCC3 DECR1 GMDS ATP2C2 KCNK1 PTPN22 SPCS3 GPA33 LINC02397 CRACR2B KIAA1324 OLFM4 COL1A2 NUF2 SUGCT LST1 SCN9A IGHA1 SRPRB GUCA2A COL17A1 HRCT1 TMIGD1 PLCB2
34 ICOS RPS2 CDH17 NTPCR CDC42EP5 MBOAT2 SPDEF GPR65 UBE2J1 MXI1 IRF8 FOXA3 SCGB2A1 CDK1 RCAN2 E2F1 AFF2 STAB1 PREP TSC22D3 HSPA13 HSD17B2 SFN TTC39B SLC3A1 MATK
35 RORA RPL36 HMGCS2 MTCH2 PRUNE2 SPDEF TSPAN1 AC007349.2 TENT5C KRT20 LINC01781 KLF4 KRT18 SMC2 CRYAB MS4A1 LAT2 CD36 MUC4 ICAM2 GNG7 MISP GPRC5A MT1E CD177 CSMD1
36 SKAP1 NRARP METTL7A CFTR SLC4A7 FRYL S100P UBASH3B IGLC5 CDKN2B HLA-DQA1 SYTL2 SLC12A2 BRCA2 SNCG UHRF1 AFF3 IL1B ADRA2A EAF2 EMP3 SLC27A4 SLC1A1 CEACAM7 TMPRSS2 ADGRG6
37 ETS1 TPI1 TP53I3 CKMT1B GALNT5 PLCB4 TPSG1 HCST EMP3 FABP1 BLK TMEM61 FOXA3 PBK NES RFC3 LY86 FCN1 GUCY2C AC104024.1 PRDM1 PRR15 HKDC1 KRT20 ADGRF1 PAK3
38 GZMM RPL8 ZRANB2 MRPL15 TCEA3 GOLGA8A EREG FYN SDF2L1 SELENOP SELL PRUNE2 GALNT8 POLQ EMILIN1 CDT1 AC009502.1 AC020656.1 C1orf21 SPCS1 CD38 CDHR5 TMEM37 SDCBP2 RHOF GRASP
39 CTLA4 ELF3 IMPA2 MCF2L AC005837.1 KLK1 CD8A ITGB7 KRT19 CD72 MB RAB15 MND1 COL6A1 PBK BASP1 C1orf162 SLC25A10 IGLV3-1 ADA2 AKR1B10 PLAUR NOTCH2 SLC1A1 PLEKHB1
40 CD247 PLCE1 CKMT1A URAD FAM83E REP15 TNIP3 B4GALT3 ACOX1 CD74 RASD1 KLF4 TOP2A NID1 ESCO2 HLA-DMA CXCL8 QSOX1 BRSK1 FCRL5 TMIGD1 CGN MT1M MIER3 CORO2B
41 CCL5 RARRES2 GPR160 AC103702.2 AC103702.2 SELENOP CD2 SPCS1 CA2 CD79B ELF3 ERN2 ZWINT TMEM47 AURKB HRK NCF2 TRABD2A FKBP2 IGHA1 PLAC8 PRAP1 CLCA4 TM4SF1 ZFHX3
42 GZMK TSPAN8 CYB5A ATP2C2 PRKAG2 SLC7A11 TRBC2 IGLV3-1 BSG LINC00926 KRT18 ANXA13 TUBB CAV2 SUGCT CD40 FPR1 ADD3 CSF2RB SSR4 PAPSS2 PPARD MT1F MISP SPTLC2
43 TNFAIP3 TCEA3 PKP2 CRACR2B SH3PXD2A TFF3 TNFRSF9 EAF2 CES2 PARP15 B3GNT6 DNAJC12 LIG1 PTN LMO2 HLA-DQB1 S100A9 DCTPP1 SPCS2 LINC02362 S100A10 CA4 MT1X SMPDL3A PBXIP1
44 GZMA NDUFB7 UQCRFS1 GDF15 AKAP9 CREB3L1 TRBC1 FCRL5 TMEM37 FCMR JUN WNK4 DIAPH3 MMP2 FAM111B MAP3K7CL PILRA HECTD1 HSP90B1 A1BG CEACAM1 SLC17A4 CDHR2 SFN ITPR2
45 CD48 GAPDH SNX7 LGALS4 HSD11B2 PARM1 SCML4 JCHAIN RETSAT SMAP2 HID1 MUC4 MCM2 FSTL1 NUSAP1 MARCH1 CFP NXPE1 SELENOM TENT5C VDR MIER3 AOC1 SPATS2L HIP1R
46 DUSP2 C10orf99 HDHD5 VSIG2 GMDS SCNN1A SH2D2A TPST2 APPL2 CD19 GALNT5 ARFGEF3 ATAD2 ARHGAP29 SHCBP1 POU2F2 TGFBI AL603756.1 SEC61B SPCS1 CHP2 MS4A12 CARD16 AQP7 TREH
47 LCP1 LCN2 TNFRSF11A SLC12A2 NUMA1 LPIN2 FASLG LAX1 SLC20A1 CR2 ARFGEF3 IGFBP2 CHEK1 GPC6 CDCA7 BLK FCGR1B CDX1 DPP7 HERPUD1 ETHE1 SPATS2L SLC2A5 LAMB3 HOTAIRM1
48 TSC22D3 RPS18 CMTM4 DOPEY2 MTRNR2L12 BCAS1 KLRB1 DUSP5 CGN REL AKAP9 RASD1 UBE2T FERMT2 CDK1 CERS4 TREM1 LEFTY1 ELL2 CD27 AQP8 PKIB GSN MEP1A TBC1D2B
49 IKZF1 LGALS4 ATP5MC1 PLCB4 XIST B3GNT6 LCP2 IFNAR2 PHGR1 ZNF331 URAD CAPN9 WDR76 FOXF1 CENPH BCL7A CSF2RA TMSB10 MANF CREB3L2 S100A14 SMPD1 NBPF14 ISG15 GDPD5
50 ITK RPL12 IMPDH2 L1TD1 ELF3 IFI27 CCL4L2 EVI2B MEP1A FCER2 IGFBP2 ANO7 FANCA RNF150 STMN1 BCL2A1 VMO1 HES1 PDK1 VIM PKIB PPP1R14D DST LAMA3 FRY
51 TMSB4X IER3 CHPT1 ARFGEF3 CDC42EP5 LINC00342 SAMSN1 OSTC MISP GPR18 TPM1 LGALS4 CCDC34 COL18A1 BCAS4 HLA-DPB1 PLD4 MTRNR2L12 EMP3 ITGA8 PRSS3 C1orf115 GOLM1 SULT1A2 ATP2A3
52 LCK YBX1 NDUFAB1 B3GNT6 RASD1 LGALS9C SYTL3 LMAN1 PRR15 TCL1A SLC12A2 GDF15 SHMT1 TNS1 NCAPG2 SWAP70 ITGAM EML4 SDF2L1 SEC61B MAOA TSPAN1 PROX1 PDZD3 KCNQ4
53 ITM2A EFNB2 PYCARD NEDD4L TCIM SMIM6 LCK DCPS TJP3 RASGRP2 FRYL ELF3 NCAPG2 MXRA5 BCAT1 HLA-DRA CMKLR1 KLF5 CYBA SELENOM S100A6 RHOC PDE9A PRSS3 MARCKSL1
54 BTG1 HSPA1A MPC2 PRKAG2 QSOX1 LCP1 LINC02362 PKIB SLC2A3 NEURL1 KCNMA1 FANCI SLIT3 WDR76 CD83 CD86 ERCC6L2 CRELD2 POU2AF1 GGT6 SLC51B CDHR5 LMO7 LYZ
55 RPS27 HEXIM1 NUBPL RAB27A CAPN8 SKAP1 SEC61B OASL CD53 DOPEY2 HPCAL1 GTSE1 MXRA8 CDKN3 LCP1 SLC8A1 ARHGAP21 PIM2 SRM FSIP2 DHRS9 TMEM176B CFDP1 TPM1
56 TRAT1 TIMM13 AGR3 HID1 LIPH PDE4A ZBP1 SGK1 GRASP IER3 URAD MAD2L1 ANTXR1 ORC6 LAPTM5 C5AR1 GTF2F2 IGKC ENAM PIGR IFI27 GPA33 TRANK1 SDC2
57 ANXA1 GSTP1 CISD1 HSD11B2 ISG15 ARHGAP9 HLA-DQA2 HPGD BTG1 GNE MCF2L NCAPG ISLR NEIL3 CNR2 C5AR2 C1orf35 TNFRSF18 NUCB2 AGPAT2 CASP5 GUCY2C SLC17A4 PTPN18
58 GMFG COX5A C1orf53 RASD1 CCDC68 LDLRAD4 SUB1 MYH14 BCL2A1 LGALS4 TPM1 HMGB2 COL5A2 HRK AICDA F13A1 AHI1 LINC02362 CLPTM1L TP53I3 TMPRSS2 TMEM176A TSPAN1 NCMAP
59 RPS27A RPLP0 ATP5F1C AL021453.1 RFLNA PTPRC DDOST CTSA NR4A2 MCF2L RPL36 LMNB1 FBN1 DMC1 LTB CALHM6 TMC4 SUB1 HSP90B1 CHP1 ASS1 PRKG1 CEACAM1 MTSS1
60 SCML4 GOLIM4 MLEC FGFR2 TCF7L2 EVL HSP90B1 TP53I3 KLF2 SLC4A7 GALNT5 DUT COL15A1 TYMS HLA-DRB5 MS4A7 DSP LINC01480 PIM2 MYH14 SLC6A8 CCL20 IFI27 CAMP
61 ITGB2 UQCRC1 HNMT FOXA3 FAM3D CD52 SSR4 CLCN2 RPS27 KIAA1324 NUPR1 UBE2C FILIP1 IRF8 LINC02397 CD4 PPP2R1A BST2 LGALS1 CDKN2B MAL2 MYH14 MUC13 RASSF6
62 RPS15A CISD3 PLA2G2A FABP2 B3GALT5 TRAC LY96 SLC17A4 RPS23 NANS B3GNT6 CENPM NOTCH3 BRCA1 RHOH CD300E PNN A1BG ITGB7 GNA11 TNFSF10 PDZD3 ABCB1 SLCO4A1-AS1
63 PIK3IP1 SOX9 DNPH1 NUPR1 RAB27A GLIPR1 ERLEC1 USP2 ARHGDIB TCEA3 ATP2C2 ALDH1B1 FBLN1 RNF144B CD37 CLEC12A DMXL2 RAB30 ALG5 MVP LAMB3 DSC2 RHOC LIPG
64 MSN RPL13 SDHAF3 SH3PXD2A SECTM1 SLA XBP1 PDE9A PTPRC GDF15 IL1R2 UMPS NR2F1 BLK BANK1 ADAP2 XIST TIMP1 PHGDH SGK2 HHLA2 C1orf21 JUP MAP7
65 JUNB MARCKSL1 EI24 CDX2 TP53INP2 TXK ALG5 ECE1 CXCR5 VSIG2 IER3 HIST1H3G GJA1 E2F8 FCRL1 AXL EPCAM TPST2 FKBP2 EMP1 ENTPD8 SAMD9L ALDOB KRT18
66 CYTIP NXPE4 MAOA GALNT12 PLAC8 PARP8 CHPF BTNL8 TSC22D3 ANXA13 JUN KIF20B OLFML2A KATNAL1 EML6 TYROBP HIST1H4E CD38 XBP1 PLS1 GPA33 FLNB TNFSF10 IFI6
67 LCP2 RPL37A UQCRC2 SOX4 LMO7 SLFN5 PDIA6 TMEM54 ARHGAP24 BCAS1 SYTL2 WDR34 GGT5 UBE2C BMP7 LILRB5 RALGAPA1 MIR29B2CHG IGKV4-1 SLC22A18AS CLDN4 IMPA1 LRRC19 BCAM
68 CD37 RPS8 MRPS9 QSOX1 MUC4 ZAP70 CD27 PLOD2 CD69 SH3PXD2A TCEA3 HIST1H1B PCDH18 XRCC2 HLA-DQA2 CD1B ATP8B1 CHPF CSF2RB IGSF9 LMO7 GNPTAB PRSS8 IGSF3
69 RPL30 SLC25A6 ADD3 HPCAL1 MGLL CXCR4 PDK1 SLC27A4 RPL34 FAM3D L1TD1 MCM8 TMEM204 AC005332.8 TMEM156 DNASE1L3 CCDC69 PDIA6 CLCN2 PHGR1 SLC20A1 GPA33 LIMCH1
70 NKG7 RPS9 SQOR ELF3 EPS8L1 ITM2A VIM RHOF RPLP2 GMDS SLC9A3R2 DNMT1 TPM2 MAP3K7CL SIT1 LRRK2 TMEM258 ERLEC1 CD177 TM4SF1 ATP1B1 MS4A12 UTRN
71 RPS12 RPL35 HMGN5 FAM83E CEACAM6 LRRN3 CREB3L2 GNA11 TLR10 FOSB RAB27A MCM3 CFH CAMP HLA-DPA1 RGS18 IGLC2 DPP7 DSC2 CD177 MUC12 ASS1 CD14
72 CELF2 IER5L ITGA2 SOX9 RIOK3 ARHGDIB LGALS1 TMEM45B RPL11 CBFA2T2 PRUNE2 WDR90 FXYD1 CCNB2 CD53 FCGR3A THEMIS2 TMEM258 SULT1A2 PRSS8 MISP SAMD9 ARHGEF38
73 GPR183 TSPO CWH43 SCNN1A CLDN4 CTSW PPIB PRSS12 RGS19 UNC13B SNORC MYBL2 COL4A2 MKI67 CORO1A PTAFR PABPC4 AQP3 TST UPP1 CAMK2N1 HRASLS2 IL13RA1
74 SAMSN1 ADD3 MDH2 FRYL IFIT1 CREM COL4A4 TPRN RPL23A HMG20B CRACR2B CDC6 AKAP12 MCM6 CCDC88A MRC1 ITGB7 SUB1 MT2A SYNPO ECE1 SQSTM1 SPIB
75 DDX5 RPL28 EYA2 KLF4 SDCBP2 PIP4K2A SPATS2 SHROOM1 JUNB HSD11B2 GMDS TUBA1B COL6A3 NDC80 HLA-DOA LAIR1 GYPC DDOST CHCHD10 KRT20 KRT19 DST ANLN
76 RPL21 RPL29 DCTPP1 AKAP9 IFIT3 CD69 TRAM1 TSPAN1 RPL19 HSPA2 EGR1 DSN1 NEXN TK1 KLHL6 HRH2 H1FX LMAN1 TDP2 CDHR5 PHGR1 PPARD ANXA13
77 SLFN5 RPL31 CENPV TPM1 TCIM SPRY1 CALU SEMA3B RPL30 ATP2C2 FAM3D AC025580.1 LUM LY86 MAP4K4 SCIMP AC009404.1 OSTC LIMA1 TMBIM1 KRT8 CA4 PROX1
78 CNOT6L MUC4 CCT2 CAMK2N1 MXD1 PTGER2 NUGGC FBLIM1 RPL32 NUPR1 SLC4A7 HMGN5 BGN VPREB3 AC012368.1 P2RY6 NUGGC IKBIP MAPK3 TP53INP2 MUC13 PTPRH MYO1B
79 RPL34 S100A14 PRDX3 EHF SAT1 TNFRSF1B HSPA13 SULT1A2 RPS27A RAB26 SLC7A8 PM20D2 FAM107A CCNA2 HLA-DQA1 NLRP3 TXNDC15 AC009404.1 ZBTB7B MUC13 MDK RHOD PTPRJ
80 GPR171 RPS3 AL355338.1 IER3 RSAD2 DOCK10 HERPUD1 SULT1A1 DDX5 CAMK2N1 FABP2 C19orf48 CCL2 PTTG1 EBI3 THBD LGALS1 TRAM1 MT1M ACAA2 HR UPP1 TLE4
81 NR4A2 RPS19 CASP6 BCAS1 FAXDC2 SH2D1B SRPRB VDR RHOH SOX4 NEURL1 SMC4 SNAI2 CR2 CD79A OLR1 TRAM1 PPIB PKP3 HRASLS2 S100A10 CDHR5 KLK11
82 SYTL3 COX4I1 EFNA5 FAM3D LGALS9B MSN DPP7 NDRG1 CYTIP GALNT12 DOPEY2 CCNA2 DAAM2 KIFC1 LINC01857 SPI1 HSPA13 RAB30 HHLA2 HSD17B2 NEAT1 SMIM5 CHD6
83 CLEC2D RHOB PHB2 GALNT7 DDX60L PITPNC1 RPN2 GPRC5A RPS20 PLXDC2 VSIG2 LEFTY1 PREX2 CENPM TMED8 PLA2G7 TXNDC11 NUGGC PDE9A DSC2 FNIP2 DDX60 ALOX5AP
84 RPS3A COX6B1 CISD3 NANS XAF1 SRGN TMEM258 FXYD3 RPL13A AC103702.2 TTC39A SYT13 ANGPTL1 BMP7 STK17A ZNF385A SEC62 C16orf54 SLC20A1 PTPRR MYO15B DSC2 PLEKHG7
85 RPL28 HNRNPAB DMAC1 JUN CDHR2 CD53 IGLV2-14 AC254629.1 FAU FABP2 TSPAN13 REG1A WWTR1 LINC01215 PTPRC GPR34 PPIB LAX1 UGT2B17 LRRC19 PARP4 TOR1AIP2 PIK3CG
86 PRKCQ EHF AIMP2 AHI1 VSIG2 GZMM TCF4 TMPRSS2 RPL21 ABLIM1 SH3BGRL3 RARRES2 IGFBP6 CHAF1A UCP2 SIRPA IRF4 CHPF DHRS9 RETSAT LINC01559 CLDN4 VAV1
87 CCR6 MYO10 MRPL58 PCK1 IRF7 CLEC2B FKBP2 HNF4A PHACTR1 NR4A1 TCIM HIST1H3B ECM1 SPI1 CD52 KCTD12 CLPTM1L ELL2 WSCD1 EFHD2 LYPD8 RHOU TMEM63A
88 SLC2A3 REG1A ATP5PB CEACAM1 HAVCR2 PDIA4 DST RPS3A QSOX1 GALNT3 DTYMK RUNX1T1 KNL1 PIK3AP1 SEMA6B SEL1L TNFRSF18 LINC00483 APPL2 CA2 PDCD6IP ARGLU1
89 SARAF C19orf70 CYC1 GLUL RUNX3 SPAG4 RHOC RPSA CDC42EP3 FAM13A ITGB8 LAMB2 HELLS PARP1 TNFSF13B C16orf54 ICAM3 DHRS11 MYH14 S100A6 PKIB CAPN12
90 SMAP2 COX6C MRPL3 CLTB PREX1 EDEM2 LGALS3 RPS13 RPL36 ATF3 MCM6 COL5A1 SGO1 LINC01215 JAML LMAN1 DNAJC3 SLC17A4 ALDOB VIPR1 RFK LUC7L3
91 GLIPR1 COX7B MECOM STX19 MATK ST6GALNAC4 HSD17B2 CYBB RAB27A TSTA3 CENPF RERGL WDHD1 MEF2C SDC3 RGS1 SEL1L MT1E ST14 PLCE1 NEAT1 NAV2
92 TPT1 EEF1A1 TIMM13 BTNL3 RGS1 PDE4B LIMA1 SH3BP5 NEDD4L H1F0 RMI2 PDGFRA ZWINT GRAP SLAMF8 GLA KLHL6 CORO2A SLC14A2 SRI TP53INP2 TESC
93 ALOX5AP ATP1B1 PPP1R14B SMIM14 CNOT6L SERP1 SMIM5 TCF4 TCIM ERI3 AK4 ATP1A2 TOP2A CR2 TMIGD3 CXorf21 ALDH1L2 ACADS CFDP1 SLC17A4 APOBEC1 PPDPF
94 RPL19 TCIM AC008397.1 MX2 ADRB1 NUCB2 PDCD6IP ADAM28 SNORC RAB26 TRAP1 POSTN FFAR1 RNF144B SDS SERP1 B4GALT3 C10orf99 MXI1 EMP1 LINC01559 FURIN
95 CD53 ATP5PD MRPS35 MALAT1 CLEC2D ELL2 TMEM236 LYN GOLGB1 AC103702.2 DHFR CSRP2 A4GALT ARHGDIB TRPS1 SOCS3 THEMIS2 TSPAN8 MEP1A BSG TICAM1 SPAG9
96 RPL10 ATP5MC1 MRPS33 SLC16A9 CLIC3 PSAT1 RFK RPS28 FAM13A AGR3 RFC4 TGFB1I1 CCDC85A HLA-DRB1 CCR1 EIF2AK4 GYPC GDPD3 PLS1 APOBR MGAM2 AKAP9
97 RPL23A ID4 DHRS4-AS1 AGR2 RGL4 SSR2 DSC2 CD48 ID4 HSD11B2 FBL PGM5 BCL7A ANKRD33B HAVCR2 MEI1 LMAN2 HSD11B2 PDCD6IP HSPB1 HSD17B2 ANXA1
98 EIF1 S100A16 HSPE1 CYP3A5 PIK3IP1 P2RX1 CDH1 RPS21 TSTA3 ID4 POLE PLEKHH2 AL157402.1 EBF1 IL1RN BCL2L11 EVI2B GPA33 VILL TDP2 IFIT1 TET2
99 RPL9 PCK1 ATP5PO TUBB2A JAML ISG20 LAMB3 RPS8 EHF FRYL RFC2 DCN BRIP1 DAPP1 CYBB ISG20 EDEM2 C2orf88 DST NEURL1B APPL2 FGFR4
100 RPS14 JUN TXN MX1 AL031280.1 SELENOM TUBA1C RPS11 EGR1 COX6C GMNN NKX2-3 CDC45 LRMP EMILIN2 ERLEC1 ANKRD28 SLC4A4 ABCB1 HES1 BTNL8 NCKAP5

separation of epithelial, stromal and immune cells

Cell split