knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p013t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p013t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p013t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5501 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3424 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 26 27 3 4 5 6 7 8 9
1 KLRB1 DERL3 S100A8 SPINK4 CTLA4 CCR10 MS4A12 PIGR ANO9 MS4A1 FOXP3 IGFBP7 HNF4A AQP8 KLK10 S100P MTRNR2L12 ADH1C MZB1 CPA3 CLDN5 MZB1 CCL5 DERL3 DPEP1 C1QB CCL5 CCR7
2 IL7R MZB1 VCAN CLCA1 LTB POU2AF1 CEACAM7 HMGCS2 DPEP1 BANK1 IL2RA COL1A1 GPX2 CA4 UCA1 SLPI AL390719.2 PLA2G2A DERL3 HPGDS VWF DERL3 GZMK MZB1 TSPAN6 C1QA CD8A RPS27
3 CD3D IGHA2 NLRP3 MUC2 CD2 MZB1 SLC9A3 UGT2B17 EPPK1 PAX5 CTLA4 COL3A1 DPEP1 DHRS9 KRT80 DSP KAT2A HMGCS2 IGHA2 MS4A2 STC1 JCHAIN NKG7 TNFRSF17 LAPTM4B C1QC GZMA LTB
4 GPR171 TNFRSF17 CD300E ITLN1 CCR6 CD38 CA2 CA12 SLC17A9 TCL1A TNFRSF4 COL1A2 CD24 GUCA2A TFAP2C AZGP1 ANKRD18A UGT2A3 FKBP11 SLC18A2 CLEC14A FKBP11 CCL4 JCHAIN FABP6 AIF1 KLRD1 MAL
5 CD2 FKBP11 FPR1 REG4 TRBC1 NLRP7 CDKN2B-AS1 PLA2G2A RNF43 IGHD ICOS C11orf96 SOX9 C11orf86 KRT17 CEACAM6 MYO6 AGR3 JCHAIN RHEX CDH5 SSR4 GZMA FKBP11 RAB25 GPNMB HOPX RPL34
6 RORA CD79A S100A12 REP15 FOXP3 FKBP11 UGT2B17 TCIM SOX4 VPREB3 TNFRSF18 LUM GDF15 GUCA2B TFF2 MDK EPPK1 UGT2B17 TNFRSF17 TPSAB1 PCDH17 TNFRSF17 CXCR4 SSR4 ASCL2 MRC1 CD160 RPS27A
7 CD3E SSR4 FCN1 HEPACAM2 TIGIT DERL3 SLC26A3 MT1G TNRC18 TNFRSF13C IL2RB IGFBP5 EPCAM TMIGD1 PTPRR GPX2 FAT1 GSTA1 SEC11C HDC TM4SF18 TENT5C CST7 SEC11C MAL2 PLA2G7 GPR171 RPL32
8 CD52 SEC11C CLEC4E L1TD1 SPOCK2 TNFRSF17 GUCA2A MUC4 SOX9 BLK TIGIT SPARCL1 RUBCNL CLCA4 KLK6 CDH1 CDK10 RARRES1 CD79A IL1RL1 PLVAP DUSP5 GZMH IGHA1 TRIM2 C5AR1 NKG7 IL7R
9 CD3G JCHAIN IL1B SPDEF TRAC SEC11C CA1 AGR3 ENGASE HLA-DRA LAYN CALD1 CLDN3 HSD17B2 C6orf15 TNNC2 AC103702.2 B4GALNT2 CD27 CTSG ADGRF5 SEC11C CRTAM GNG7 RUBCNL MS4A6A XCL2 RPL11
10 CD40LG PRDX4 AQP9 FCGBP CD3D CD27 MT1M CA2 SPIRE2 HLA-DPB1 TTN NNMT CDCA7 SLC17A4 FBXO2 EPCAM KNOP1 MT1H CTLA4 CLU KDR PIM2 BTG1 CD79A AZGP1 FCGR3A CD3E RPL9
11 CXCR4 IGKJ5 MIR3945HG ANO7 CD3E CRELD2 CDHR5 OLFM4 CLDN4 HLA-DPA1 TNFRSF9 C1R MYC PKIB TACSTD2 EFNA1 PCLO PIGR SSR4 ADCYAP1 EMCN GNG7 TSC22D3 PAIP2B GPX2 SLC16A10 CCL4 CD3D
12 SPOCK2 IGLV3-1 IL1RN RETNLB ZC3H12D CD79B CLCA4 MT1E HNF4A HLA-DRB1 CD28 COL4A1 CLDN4 SLC9A3 AHNAK2 QPRT CLUH MT1E FAM30A GATA2 APLNR POU2AF1 XCL2 PRDX4 ENAH SDS CD7 RPS3A
13 LINC01871 IGHA1 PTGS2 ATOH1 ICOS IGKJ5 MT1H MT1H CPNE7 AFF3 CCR6 COL6A2 SOX4 MS4A12 KRT23 JUP RNF43 SLC4A4 SLAMF7 KIT SOX18 JSRP1 CD3D AC104699.1 ATP9A MS4A4A PRF1 RPS12
14 LTB XBP1 CSTA B3GNT6 RORA LMAN1 TSPAN1 LGALS4 AC103702.2 CD83 ADAM12 DCN ASCL2 PDE9A SULT2B1 PYGB ANO9 CA2 PRDX4 KRT1 F2RL3 FKBP2 GZMM IGHA2 CDH1 HLA-DMB CD3G CXCR4
15 TRAC HERPUD1 OLR1 KLK1 TTN CD79A PIGR CDHR5 GDF15 SPIB LINC01943 C1S CEACAM6 TMEM37 TNFRSF12A LMO7 TMPRSS4 CA12 CREB3L2 RGS13 MMRN2 IGHA1 DUSP2 HERPUD1 CEACAM6 SLCO2B1 TRGC2 RPL3
16 TRAT1 JSRP1 AC020656.1 TPSG1 CD7 NXPE3 CA4 DMBT1 ELF3 LINC01857 LCK COL6A1 CDH1 CEACAM7 TM4SF1 CD24 MKI67 MT1G TXNDC15 MAOB THSD7A SLAMF7 CD8A FCRL5 CDCA7 FPR3 PTPN22 SARAF
17 TNFAIP3 CCR10 IL1A BEST2 RGS1 XBP1 SDCBP2 NXPE1 CHTF18 HLA-DQA1 IKZF2 COL6A3 DSP SDCBP2 MMP7 HNF4A EPS8L2 FAM171A1 IGHA1 GCSAML JAM2 XBP1 IFNG RAB30 FERMT1 CD163 KIR2DL4 RPS16
18 SARAF SPAG4 ACSL1 MB BTG1 IGHA2 PKIB ID1 QPRT CD74 LAIR2 THY1 RAB11FIP1 HHLA2 LAMC2 TSPAN6 ARHGEF11 NXPE1 SSR3 NTRK1 CYYR1 HERPUD1 ZFP36L2 JSRP1 S100P IGSF6 FYN RPS29
19 RPLP1 IGKV4-1 BCL2A1 ST6GALNAC1 TNFRSF9 SLAMF7 DHRS9 ELF3 KIFC2 MARCH1 IL1R1 COL5A2 S100P COL17A1 ANXA3 ATP10B SPIRE2 SI TENT5C RAB27B LDB2 CD79A GPR171 SLAMF7 EBPL CSF1R CXCR4 RPL23A
20 CD69 CD27 AIF1 NEURL1 PTPRC SDF2L1 MT1G LCN2 FAT1 HLA-DQB1 SPOCK2 ADAMTS1 CDH17 UGT2B17 KCNK1 PRELID3B PYGB ARL14 TPST2 LTC4S PREX2 SPAG4 PTPRC UBE2J1 DNTTIP1 MS4A7 GZMM RPL19
21 CREM FKBP2 CFD RAP1GAP ARID5B RAB30 SLC51B ARL14 KAT2A CD37 CD2 COL14A1 MLXIPL ALDOB PRSS22 KRT23 CENPJ RFLNA FKBP2 FCER1A ROBO4 RAB30 CD69 POU2AF1 UCHL3 CD86 LINC01871 RPS6
22 CNOT6L SDF2L1 TYROBP TFF3 FYB1 HSP90B1 PDE9A MT1M CEACAM6 CCR7 TOX2 PAPPA AC103702.2 CASP5 PARD6B C6orf222 MLXIP MAOA SPCS2 CTTNBP2 KANK3 IGHA2 TRBC2 FKBP2 IGFBP2 TREM2 CRTAM RPSA
23 MYBL1 TXNDC15 C5AR1 PRUNE2 SKAP1 TENT5C TMIGD1 SELENBP1 CD24 GRASP F5 FBLN1 LEFTY1 SLC26A3 MSLN GFPT1 LLGL2 MT1M HERPUD1 CSF1 PALMD SDF2L1 TXNIP TENT5C AHCY MSR1 CD3D RPLP2
24 LRRN3 AC104699.1 AC245128.3 DNAJC12 DUSP4 UBE2J1 MT1E PLCE1 DSP CD79A ZC3H12D EMILIN1 QPRT CEACAM1 PDP1 CES2 MOGAT3 SPINK1 UBE2J1 ALOX5AP RASIP1 PRDX4 KLRD1 CD27 SLPI CYBB PIK3R1 RPL13A
25 FYB1 CRELD2 THBD SPINK1 S100A4 IGLL5 SFN NXPE4 CLDN3 LINC00926 IL1R2 SULF1 PERP SMIM5 OCLN MAL2 ATAD5 ACADS IGHV4-34 PTGS1 TIE1 ANKRD28 RPS27 IGLV3-1 CD24 PTAFR CTSW SELL
26 PTPRC IGKC CD14 CREB3L1 IL7R EAF2 KRT20 KRT8 MACC1 HLA-DQA2 DUSP4 AEBP1 SLC12A2 CA2 SLC2A1 KLF5 ZKSCAN1 LEFTY1 CRELD2 AC020571.1 AFAP1L1 CD27 TRAC XBP1 PRELID3B SLC15A3 PARP8 RPL30
27 RARRES3 TENT5C MNDA PIGR CD52 PIM2 GPA33 PHGR1 ATP9A LINC01781 TRAC FSTL1 CES2 DUOX2 EPB41L1 ATP9A NKTR REG1A RAB30 DLC1 CD34 FBXW7 DDX5 EAF2 VIL1 CD14 KLRB1 RPS15A
28 TRBC2 SSR3 CFP KIAA1324 CD247 CEP128 TMEM54 HSD11B2 LLGL2 HLA-DMB CD7 GNG11 RPS21 GPA33 NDFIP2 CXADR ABR CFTR CCR10 VWA5A CXorf36 FCRL5 CD3E CCR10 ANXA3 SIRPA SLA2 TXNIP
29 GIMAP7 SPCS2 S100A9 MUC4 LAYN TRAM2 SLC4A4 TSPAN8 VEGFA IRF8 RASGRP1 DKK3 SLPI SLCO2A1 CXADR SLC39A4 MAVS ST6GALNAC1 TNFRSF4 PTGS2 TEK CCR10 CD3G SPAG4 SLC12A2 HLA-DRB5 TRBC2 RPL13
30 FYN DUSP5 PTX3 WFDC2 CD3G SPCS3 HSD17B2 GOLM1 CDK10 LAPTM5 LTB CDH11 NORAD PTPRH MAL2 CLDN3 ENC1 MECOM TTN HPGD EXOC3L2 TP53INP1 HCST SPCS2 PFDN4 STAB1 IL7R TRBC2
31 TMSB4X SPCS3 NCF2 VSIG2 IL2RA PRDX4 CEACAM1 ATP8B1 ARGLU1 HLA-DRB5 CD247 FBN1 TFF3 SULT1A2 CDA DDR1 CCNL2 ALDOB IGKJ5 TYROBP JCAD HSP90B1 PRF1 IGKJ5 ANXA4 TYROBP PDE4D RPLP1
32 S100A4 SPCS1 CPVL ERN2 CD28 SSR3 SLC26A2 PLCB4 RUBCNL CXCR4 LINC02195 CYGB AL117382.1 SLC51B P4HA2 CLDN4 ENGASE CHP2 TNFRSF18 FERMT2 ADGRL4 IGKJ5 RUNX3 SSR3 AKR1C3 HLA-DQA1 HCST RPL10
33 BTG1 CYBA IRAK3 AGR3 PBXIP1 FKBP2 FSIP2 PCK1 GPX2 LTB SLAMF1 ANTXR1 ELF3 BTNL8 FOXQ1 MYO10 BRCA2 OLFM4 XBP1 CLNK ERG JUN PARP8 SDF2L1 PPP1R1B GNB4 PTPRC RPL28
34 CXCR6 POU2AF1 CXCL8 SERPINA1 SRGN TP53INP1 FCGBP MTRNR2L12 MYC FCRLA CD3D CHL1 RPL8 C1orf115 SLC2A12 IFI27 AFDN SNORC POU2AF1 CADPS SHANK3 BTG2 H3F3B DUSP5 DKC1 APOE CD69 RPL21
35 TRBC1 MEI1 LST1 AGR2 SARAF IGHA1 FABP1 PTPRF MYO6 NR4A2 CXCR6 MXRA8 IFITM3 CLDN23 CEACAM6 SPTBN1 DST AGR2 SDF2L1 GMPR PCDH12 SPATS2 TRGC2 CRELD2 CCND1 SIGLEC10 GZMB GIMAP7
36 ARHGDIB GNG7 PLEK SMAD9 TRBC2 SRM GUCA2B ABCC3 SPTBN1 FCMR S100A4 CLMP HMGA1 TSPAN1 MBOAT2 GDF15 LUC7L3 SULT1B1 ZBP1 P2RY14 SOX17 UBE2J1 TNFAIP3 MANEA TOX3 NRP1 ZFP36L2 BTG1
37 SLA SLAMF7 CYBB ENTPD8 TMSB4X CPNE5 CYP3A5 MUC5B OLFM4 CD52 HLF GPC6 SPTBN1 MEP1A TNNC1 PDZK1IP1 UTP14C C10orf99 ISG20 AREG PCAT19 CRELD2 SRGN SPCS1 EPCAM HLA-DQB1 SLA TRBC1
38 CD96 CD38 RNF144B TCIM GMFG TXNDC11 CDKN2B SPINK1 EPS8L2 REL SH2D2A COL4A2 SCD AHCYL2 DNTTIP1 ELF3 TRIM2 TCEA3 MANEA ANXA1 NPR1 CD38 CNOT6L MIR29B2CHG PERP CPVL RNF125 TRAC
39 CD6 PIM2 C1orf162 ANXA13 CNOT6L DCPS PHGR1 FAM3D AFDN LY86 TRBC1 COL5A1 KRT19 USP2 LMO7 PIPOX CENPF LCN2 DNAJC1 ALDH1A1 NOVA2 IGLV3-1 CD2 JUN GNG4 TFEC TMIGD2 RPS26
40 ETS1 NUCB2 RETN MLPH CCR4 HSH2D AQP8 AC023157.3 ARHGEF11 SMAP2 GBP5 SPARC CYP2W1 HSD3B2 PDZK1IP1 PERP KCNQ1OT1 LGALS4 FBXW7 GLUL MYCT1 SSR3 RARRES3 TP53INP1 HNF4A MPEG1 CD52 FAU
41 ZFP36L2 FAM30A LILRB2 AC005833.1 RPS26 JCHAIN VSIG2 TFCP2L1 CDCA7 RPL11 PBXIP1 COL12A1 GOLIM4 CDHR5 INAVA RAB25 OGT C15orf48 CCDC69 ARHGAP18 ARHGEF15 GAB1 NR4A2 CYBA AL117382.1 CTSL ITGA1 RPS19
42 PDCD4 MANF CXCL2 MT1G ARHGDIB SSR4 TMEM37 KRT18 CDH1 POU2F2 CD3E CFH KRT8 CYP3A5 GJB3 PPL ANKRD36C PLCB4 SPAG4 VIM CALCRL SEL1L CALM1 TXNDC15 GFPT1 RNASE6 PTGER2 RPS8
43 IL18R1 SELENOM FPR2 WNK4 ITK CLPTM1L SLC17A4 AOC1 ENC1 RPS23 STAM CAVIN3 CDX2 PRAP1 TMEM45B KRT20 NFATC2IP LIMA1 SDC1 CD69 NUAK1 ICAM2 ETS1 NUCB2 EIF6 C3AR1 CNOT6L FYB1
44 IL22 SEL1L RAB31 LGALS4 BCL11B SPATS2 MISP C10orf99 CDH17 CD79B CARD16 PLAC9 TNNC2 DUOXA2 FHL2 APP ASH1L MUC4 SPCS1 CD9 LINC01235 HIPK2 DNAJA1 IGKV4-1 QPRT CLEC7A CST7 CD3E
45 SRGN UBE2J1 LILRB3 ZG16 CXCR4 MANF SULT1B1 AGR2 TMC5 RPS11 ARHGDIB PXDN KRT18 OASL LINC01559 FAM84B PLEC GOLM1 PDK1 ACSL4 FLT1 MEI1 SARAF MANF BZW2 CD68 TMSB4X RPS28
46 CD7 TMEM59 FGR TCEA3 PRDM1 FCRL5 AOC1 NUPR1 VIL1 RPL9 GBP2 COL15A1 KLF5 ENTPD8 CRB3 KRT19 BDP1 ATP8B1 GAB1 CD63 FAM107A NUCB2 EIF1 HSP90B1 ZDHHC9 VSIG4 TRAC TPT1
47 ICOS LMAN1 CD93 FAM3D LINC02195 PPIB AMN EPS8L3 ZBTB7A PLD4 TNFRSF1B NEGR1 JUP XDH S100P SMIM24 NEAT1 PBLD ERLEC1 KIAA1549 HSPA12B TXNDC11 TMSB4X IGHV3-30 PPIC MMP9 TSC22D3 RPL10A
48 FKBP5 MANEA FGL2 CDC42EP5 TNFRSF4 LAX1 HMGCS2 CDC42EP5 ELMO3 RPS3A STK17B PCDH18 SMIM22 TRIM31 AC104534.1 SLC44A4 ARGLU1 TSPAN8 NUCB2 LAPTM4A ADAMTS9 SIL1 ID2 LMAN1 LEFTY1 KCTD12 CRYBG1 RPS14
49 RGS1 ITM2C G0S2 FABP2 TNFAIP3 SPCS2 PLAC8 TP53I3 AZGP1 TCF4 SAMSN1 NID1 LAPTM4B SFN CPE CDH17 SMIM31 SEL1L CAPG FILIP1 IGLL5 IL7R PIM2 BACE2 LAIR1 GZMH RPS5
50 PDE4D RAB30 CLEC7A CRACR2A PIK3IP1 SEC61B MEP1A HES1 IRF2BP2 RPS8 CCR4 AKAP12 IFI27 CDHR2 EMP1 NEBL CDC42EP5 SPCS3 SRGN ADCY4 AC104699.1 FYN FAM30A MAPK13 C1orf54 SYTL3 CD69
51 ARL4C ERLEC1 ADGRE2 CA12 STK17B IGLV3-1 SELENOP ACADVL MUC5B GPR183 RAC2 POSTN TPM1 LINC01559 CHMP4C DNAJC15 SELENBP1 TSC22D3 ALOX5 EGFL7 SPCS3 CTSW SPCS3 TMEM45B SPI1 SCML4 ETS1
52 LCK CLPTM1L LILRA5 PHGR1 AC058791.1 RABAC1 PRSS3 MLXIP JUP BTG1 PMAIP1 EDNRB AHCY AOC1 CDK8 NORAD RNF186 ANKRD28 TESPA1 FZD4 PABPC4 HOPX TMEM107 PON2 DOCK4 TNFAIP3 TOMM7
53 AC020571.1 TP53INP1 MPEG1 SCNN1A CREM GMPPB LGALS4 MT1F D2HGDH RPL23A CREM SERPING1 RPS18 FCGBP SERINC2 PPDPF BCL2L15 RGS1 LAT2 FAM110D ANKRD37 CD7 TPST2 RNF43 APOC1 TRDC EIF1
54 CLEC2D HSPA1A THBS1 KRT18 LCK HERPUD1 SELENBP1 MT1X PERP RPL32 FYB1 CCDC80 VIL1 ARL14 MARVELD2 LAMB3 CCDC68 JSRP1 MLPH FAM69B IGHG1 PIK3R1 ANKRD28 NFE2L3 FCER1G CLEC2D RPS3
55 DDX5 HSP90B1 OSM FRYL SMAP2 IFNAR2 KRT19 FRYL MYH14 RPS27 APBB1IP CYR61 S100A6 BTNL3 SLPI DPEP1 NXPE4 KLF2 IL18R1 CAVIN2 SPCS2 RPS29 HSPA1A KLF5 ABCA1 GZMK RPS4Y1
56 PARP8 IGHV1-24 LYZ B3GNT7 ETS1 DUSP5 LINC02023 HEXIM1 ZKSCAN1 NFKBID ITM2A PLAT RNF43 LINC02023 CDCP1 HEBP2 GPA33 HSP90B1 BCL2A1 INHBB FAM30A RPS27A ANKRD37 SOX9 LILRB4 CD2 BCL11B
57 TXNIP SEC61B CD36 KLF4 ZNF831 MEI1 GPT MT2A PTK6 RPL13A UCP2 EDNRA FAT1 SLC3A1 CEACAM5 ZNF703 SIAE KLHL6 LEO1 SOX7 SEL1L3 TRAT1 IGHV3-74 S100A16 CTSB BTG1 RPL18A
58 RNF19A RABAC1 MS4A6A COL16A1 HLA-A PNOC ACADS SLC44A4 LAMP3 TRBC2 ASPN PPDPF MISP MYH14 FXYD3 TCIM PRDM1 TIMP1 ZNF521 IGHM ANXA1 KLF2 GTF2F2 LILRB2 CD96 CD52
59 TSC22D3 IGKV3-20 TNFAIP2 BCAS1 CARD16 AC104699.1 FXYD3 MLXIPL RPL34 RUNX3 GGT5 TOX3 KRT20 DSG2 CAMK2N1 PLCE1 CLPTM1L LIF ZNF385D PRDM1 AC044849.1 TMEM59 GPR160 PLXDC2 XCL1 RPL6
60 CD53 ANKRD37 TREM1 HMGCS2 TNFRSF18 DDOST C10orf99 ZMYM2 RASGRP2 FAS EHD2 EPPK1 TP53I3 TINAGL1 KIF3B TSPAN1 LMAN1 ARHGEF6 GNG11 BCL2L11 TRBC1 BTG2 KRTCAP3 NCF2 CREM RPL27A
61 TMIGD2 JUN EREG FOXA3 ADAM12 SPCS1 CA12 C6orf222 CD72 PTPRC ITIH5 IGFBP2 CDKN2B-AS1 KRT20 FERMT1 PLA2G10 GNG7 CLIC1 MGP MIR29B2CHG JUND SEC61B ITGA2 SLC8A1 ID2 PIK3IP1
62 CTLA4 BTG2 TLR2 MT1E TBC1D4 AQP3 AC254629.1 KNOP1 RPSA MAST4 BGN FERMT1 CCDC68 RND3 PTTG1IP NIPAL1 PIM2 S100A4 CRIP2 ERLEC1 SLA IGKC CSE1L ADAP2 GPR65 JUNB
63 CD5 IGHV3-23 NAMPT ELF3 RPS27 PHGDH MGLL ARHGAP32 RPL19 SKAP1 NDN PRELID3B PIGR PRSS3 DNTTIP1 NUPR1 H1FX STXBP6 RAMP2 ISG20 GZMB FOSB CPNE1 SLAMF8 MYBL1 RPL5
64 CCR6 TMEM258 HLA-DRA SYTL2 JUNB ISG20 KRT8 DST RPS27A ZNRF1 COL18A1 GFPT1 SELENOP CAMK2N1 CXXC5 CDX1 EIF2AK3 SH3BGRL3 GABRD TXNDC15 CRYBG1 IGHV3-23 NIFK EMILIN2 TXNIP UBA52
65 RPS27A KLF2 AP1S2 GSN CYTIP CLIC4 HSD11B2 SLC12A2 FAU CD52 FERMT2 MAP7 TMEM54 SLC15A1 TOX3 SH2D4A MANF RGS10 LINC01985 ST6GAL1 SRSF7 ERLEC1 RCN1 AC020656.1 PDCD4 RPL18
66 OXNAD1 UBC CXCL3 NEDD4L RUNX3 PLCG2 SEMA6A NORAD RPLP2 ARID5B EFEMP2 PMEPA1 SCNN1B MET MAP7 BMP2 ITM2C SAMSN1 S1PR1 CYBA CD247 PABPC4 JUP RAB31 SARAF RPS20
67 MGAT4A IGLC2 HCK GALNT12 IL2RB NT5DC2 HHLA2 BICDL2 RPS20 RORA PDGFRA HSPD1 DSC2 NECTIN4 MUC13 FAM3D CYBA NFKBIA FGD5 DPP7 CCL4L2 TSC22D3 EHF CD300A ETS1 RPL36
68 SMAP2 IGLC3 RILPL2 TSPAN1 DDX5 ZBP1 COL17A1 CGN RIPOR2 CD3G MMP2 ATP5F1E CGN BCL2L1 ADGRG1 PCK1 HIPK2 BMP2K FAM167B IGKC MYBL1 PIM1 CES2 LST1 RARRES3 RPS18
69 PIK3IP1 MEFV HSPA2 SAMSN1 TCF4 CKB FERMT1 RPL10 GMFG SCARA5 NCOA7 EMP1 SDC4 RPS21 PAPSS2 CYTIP CTNNBL1 ADGRL2 LINC01480 HLA-E IER2 CDH17 VMO1 PIP4K2A RPS4X
70 PTPN22 ICAM1 CRACR2B RAP1A APOBEC3G TCIM RAB11FIP1 RPS13 HLA-A LHFPL6 PM20D2 PPP1R14D TMPRSS4 PTK6 EPHX2 TP53INP1 CKLF FAM171B MANF HLA-A IGKV3-20 SRPK1 HLA-DMA RPS19 RPL38
71 CDC14A KCTD12 HSD11B2 RASGRP1 PDIA4 TSPAN8 MUC12 RPS28 MALT1 TFPI KNOP1 EGLN3 GPRC5A RAB11FIP1 NEU4 TXNDC11 TUBA1A TMEM233 CREB3L2 TOMM7 HSPA1B DCTPP1 HLA-DOA GFPT2 RPS7
72 ANXA1 LRRK2 GNE IKZF3 TXNDC15 SERINC2 HERC2 SP110 CYTIP ADH1B ADGRG1 SMPD1 PRSS8 KRT8 IGFBP2 BST2 IDS NRN1 EIF2AK4 JUNB EGR1 DSP PMP22 LCK KLF2
73 LPIN2 SLC2A3 NPW EIF1 DERL1 SEMA3B CDX2 YPEL5 JAK1 CTSK POFUT1 SMIM6 LSR SLC17A9 SHROOM3 ARID5B REL GJA1 IGKV3-20 SYTL3 H1FX ESD FGL2 RPLP1 NACA
74 AC058791.1 CCL3 GALNT5 ANKRD12 ERLEC1 ENTPD8 NCOA7 RPL18A OXCT1 EDIL3 MUC12 AKR1B10 EPDR1 MYL9 SLC28A2 DUSP5 ID2 SPARCL1 LMAN1 CD48 IGLC2 PGRMC1 LRRC25 ANXA1 DDX5
75 RPS19 SOD2 ARL14 KLRB1 OSTC CCDC68 CCNL2 SELL TNIK LOXL2 ITGA2 SLC6A8 CDH1 SMIM22 PDK4 RPL36AL SELENOK SERPINE1 TRAM1 TNF FOS DPM1 HLA-DQA2 SRGN RPS11
76 GZMA CD83 ALDH1A1 UCP2 LINC01480 FRMD1 PMEPA1 NACA BTG1 TPM2 MUC5B PLAC8 RAB22A MGAT4B CKB EAF2 EGR3 CLEC1A DNAJC1 FOSB IGLC3 LMO7 CCL18 DUSP2 RPL29
77 RASGRP1 CCL3L1 REG1A IL1R1 C16orf54 TMPRSS2 ABHD11 RPS14 CORO1B HAPLN1 EIF2S2 VILL TRIM29 EPB41L1 MT1X IGLV3-1 UBB COL15A1 CPEB4 RPLP2 IGHM PLPP2 HLA-DPB1 ALOX5AP RPL24
78 GMFG CD163 IFI27 TXNIP NUCB2 ANPEP ITPR3 RPS5 TMEM154 FKBP10 TRIM2 PRSS3 L1CAM EIF2S2 CREB3L1 CD38 SOCS1 VEGFC ITM2C CMC1 HSD17B12 HLA-DRB1 DDX5 CD48
79 RPS27 SPI1 KRT8 RPS4Y1 CCDC69 NEU4 VARS RPL27A CCND2 RBMS3 PPP1R1B SLC4A4 DSP DLGAP4 HSD11B2 IGHV3-23 H3F3B ADAMTS4 EVI2B MYL12A NDFIP2 MMP12 EVL RPL37
80 CRYBG1 STX11 RASD1 TSC22D3 SUB1 TP53I3 BAIAP2L1 RPS16 CD5 PCOLCE TRAP1 CDKN2B S100A16 SOX4 MT1F CPEB4 OSBPL8 PGM5 PDIA4 RPLP1 SCD HLA-DRA RGS1 PTPRC
81 GLIPR1 CTSS ARFGEF3 STAM PDK1 VILL SCD DCK IL32 CCL11 IPO5 SERINC2 PRELID3B CPE PPP1R1B SELENOS TNFSF10 ARHGAP29 SEC61B RPL28 USH1C CXCL16 RUNX3 ITK
82 EMB SAMSN1 NXPE1 SH3BGRL3 DENND5B TCF7L2 LPIN3 DDX5 TMSB4X PDGFRB MUC13 ACVRL1 LAMB3 SOX9 TMEM54 ISCU DUSP6 LHX6 IGLC3 RPS19 CDX1 EPB41L3 SKAP1 RPS15
83 TPT1 SERPINA1 ATP8B1 RPL28 CSF2RB ARL14 UCKL1 RPL21 P2RY10 A2M PRDX5 C19orf33 TMBIM1 PRR15L PRSS3 TRAM1 PRDX1 DLC1 KLF2 CLEC2D HACD3 MNDA RNF19A CD3G
84 FNBP1 TNFAIP6 FAM3B RNF19A CPEB4 MT2A YTHDF1 RPL5 CD4 BICC1 ANO9 VSIG2 PERP GTF2IRD1 DEGS2 CSF2RB RAC2 DYSF IGHG2 RPL23A CCT5 LY86 OXNAD1 RPL27
85 GPR65 ITGAM MCF2L IKZF2 TPST2 PCK1 TRIM2 ADAM28 PHLDA1 FOXF2 CCND1 LAMA3 S100A14 LNX2 GJB1 TMEM258 FOXP1 BCAM H1FX RPS26 SPRYD7 MAFB CBLB RPL14
86 ALOX5AP C3AR1 UNC13B IRF1 BLNK CES3 GFPT1 KDM6B FYN ISLR VEGFA NBL1 JUP SCD SEMA6A FNDC3B ATP6V0A2 HYAL1 RABAC1 UBE2S DDX27 HCK EMB CD2
87 TNFAIP8 SLC11A1 NXPE4 GBP5 TRIB1 AC023157.3 MYO10 CD40 ARL4C DDR2 ADIRF MIER3 AFDN CCND1 TNFRSF11A PIM1 ADRB2 ANGPTL2 IGLC2 DUSP1 TSPAN8 TSPAN4 RPS27 RPL12
88 CD247 SMIM25 PLA2G10 IL18R1 ITM2C ETNK1 KLF5 BCL2A1 PRDM1 GUCY1B1 CPNE7 TMPRSS2 C4BPB LAD1 SERINC2 IGLL5 PTMA ACKR1 CLPTM1L ARHGDIB MAP7 MFSD1 CD48 ANKRD12
89 RPSA KYNU S100A14 ARL4C TMEM156 IFI27 IER3 RPS29 PFN1 PTGDS PSMA7 C1QTNF12 SRPX2 TFF3 CES3 TMEM59 PLIN2 RHOJ SPCS1 PIP4K2A AC103702.2 GPR34 ZNF331 PFDN5
90 STAT4 EMILIN2 FXYD3 CST7 PIM1 TPRN KIF3B SNX2 FANK1 TGFB1I1 ATP2C2 LYPD8 SH3RF1 GSS EPCAM DDOST FTH1 ATOH8 IGHV3-23 ITK HSBP1 SIGLEC1 GLIPR1 RPS2
91 STK17B MXD1 HYI PMAIP1 ST6GAL1 DUOX2 SCAND1 UCP2 TBC1D4 NEXN EHF LRRC19 KLF5 SNHG18 AKR1C3 UBALD2 DUSP10 DPYSL3 HIST1H2BG AC026979.2 RPP40 PILRA THEMIS RPS23
92 RPS3A COTL1 RARRES1 MAST4 PRDM1 MUC12 PFKL RPL7A REL MXRA5 ENGASE TRPM6 MYO6 PSMA7 PHGR1 BTG2 CDC42EP3 CCM2L MIR155HG CD52 TPD52L1 CCL3 SH2D2A RPS13
93 PBXIP1 HRH2 CYP3A5 UGP2 ANKRD28 SGK1 TRAP1 RPL18 SELPLG FHL1 RPL36 SECTM1 FSTL3 ARFGEF2 TMEM246 SSR2 TIMP3 AL583785.1 TMEM258 HLA-C PPP1R14B LILRB5 NR4A2 LDHB
94 ITK HCAR2 CLDN4 APBB1IP IKBIP AGR3 ADGRG1 RPL12 CLEC2D VSTM4 ITGA6 RHOF SYT7 TMC5 GIPC2 ICAM2 GNA15 FAM155A TRIB1 PTGER2 HDAC2 CLEC11A TSPYL2 TSHZ2
95 CYTIP NR4A3 AOC1 BTG3 PDIA6 DSC2 BACE2 RPL3 PARK7 SFTA1P RPL35A HPGD PPL GID8 LGALS2 IGLC3 TNFAIP3 HEG1 UBC GIMAP7 ACTL6A ACP5 PIK3IP1 TNFAIP3
96 CD48 IGSF6 ANKRD36C RPS29 SEL1L CHP2 PKP3 UBA52 LAT ADAMTSL3 AFDN CHP2 MUC13 ANXA4 UGT8 ZFP36L2 MYL6 AP001528.2 FOSB BRD2 GSS CXCL8 CYTIP TSC22D3
97 G3BP2 HLA-DRB1 SLC12A2 RPL11 IGHV3-23 EPS8L3 ABCC3 SMIM14 SIT1 FIBIN STAU1 PLA2G2A MYOF PMEPA1 DSG2 ATF4 SMYD3 TLL1 IER2 RPS15A NQO1 DMXL2 AC044849.1 RPL7A
98 RPL28 CD302 SMIM14 G3BP2 HIST1H2BJ C1QTNF12 ZNF703 HLA-DMA CORO1A ACTA2 SPIRE2 SMPDL3A COL17A1 FOXQ1 MGST2 IGLC2 TNFRSF9 IGFBP3 HSPA1A ZFP36 IFITM3 HMOX1 CELF2 RPL35A
99 CCL5 HCAR3 TM4SF5 HLA-E DAPP1 TST EFNA1 AL121944.1 RGS1 KANK2 AZGP1 MUC12 TPMT DUSP8 HNF4G TMEM107 LMO4 LIFR PPP1R15A PTPN22 CTTN RNF144B RPS27A RPL35
100 ERN1 ITGB2 TRPM4 MAF ITGB7 MT1X ILF3 RPLP1 SYTL3 LAMA4 LMO7 GDPD3 RAB25 PTPRF DHRS11 SEC61B EGR1 PTPRM HSPA5 SOCS1 CYB5B LGMN FYB1 SRGN

separation of epithelial, stromal and immune cells

Cell split