knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p013n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p013n"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p013n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 6339 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3670 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 3 4 5 6 7 8 9
1 MZB1 IGKC SH2D6 C11orf86 MS4A1 MZB1 OLFM4 GZMB AQP8 CA7 TENT5C STEAP1 IGHA1 SPNS2 IGFBP7 CCL3 CPVL TPSAB1 HMGCS2 IL7R AQP8 TNFRSF17 GZMA IL7R CLCA1
2 DERL3 IGHA2 HPGDS TMIGD1 BANK1 SSR3 HMGCS2 KLRD1 SLC9A3 OTOP2 MZB1 KRTCAP3 SSR4 TFF1 SPARCL1 CCL4 AC020656.1 CPA3 SELENBP1 CD2 SLC9A3 IGHA2 NKG7 CD3D ITLN1
3 SSR4 IGKJ5 TRPM5 AQP8 MARCH1 TNFRSF17 SELENBP1 KIR2DL4 MS4A12 BEST4 JUN ADH1C MZB1 FER1L6 COL3A1 CCR10 MS4A6A CD40LG PCK1 TRAC TRIM31 JCHAIN CD8A CD3E MUC2
4 TNFRSF17 TNFRSF17 AZGP1 PI3 HLA-DPB1 FKBP11 NUPR1 GZMA CEACAM7 MSLN PDK1 LEFTY1 JCHAIN TBX10 C11orf96 IGKC MPEG1 S100A4 GPX2 CD3D SELENOP FKBP11 CCL5 CXCR4 SPINK4
5 IGHA1 PRDX4 PSTPIP2 TMEM37 HLA-DRA IGHM MUC4 NKG7 SLC26A3 OTOP3 KLF2 CWH43 TNFRSF17 MUC2 A2M TNFRSF17 CLEC10A LTC4S UGT2B17 KLRB1 SLC26A3 PRDX4 CCL4 LTB REP15
6 SEC11C JCHAIN BMX CDKN2B-AS1 CD22 DERL3 PIGR HOPX TMIGD1 MEIS1 IGLV2-14 MYB DERL3 REP15 SPARC IGKJ5 STAB1 IL7R ADIRF CD3E CLCA4 DERL3 CD3D CD3G RAP1GAP
7 IGHA2 IGHA1 COL27A1 SULT1A2 CD83 SSR4 UGT2B17 TRDC GUCA2A ADCY5 DUSP5 TSPAN12 FKBP11 IL3RA TIMP3 MIR155HG CLEC7A TRBC1 C10orf99 CD40LG MS4A12 IGKJ5 GZMK TRAC RETNLB
8 JCHAIN MZB1 HCK COL17A1 LY86 SEC11C TCIM CD160 MUC12 PCSK1N POU2AF1 NFIA SEC11C SYTL5 IGFBP5 IGKJ1 CFP VAMP1 CD24 CD3G TMIGD1 SSR4 CD3E BCL11B ST6GALNAC1
9 FKBP11 DERL3 IL17RB EMP1 TCL1A SEC61B AC103702.2 PRF1 CEACAM1 SPIB IGLL5 DDAH1 CD79A GPR153 NNMT CYBA MNDA RGL4 MT1G ICOS CEACAM7 IGHA1 CST7 CD2 SPDEF
10 SSR3 CCR10 PTGS1 ARRDC4 HLA-DRB1 JCHAIN PLCE1 TYROBP SELENOP HES4 FOSB PPP1R1B PRDX4 MLPH COL6A2 C12orf45 CSF1R ANXA1 PIGR SPOCK2 MUC12 SEC11C CD2 TRBC2 ATOH1
11 UBE2J1 SSR4 SH2D7 SECTM1 LINC01857 CD79A SOX4 TMIGD2 CLCA4 CA4 DERL3 IGFBP2 SSR3 SYT7 COL1A2 IGHA1 VSIG4 IKZF1 CDX2 CD52 GUCA2A MZB1 HCST CTLA4 BEST2
12 PRDX4 SEC11C B4GALNT4 HSD17B2 HLA-DRB5 POU2AF1 CDC42BPA CCL5 ANPEP NEURL1 H1FX EPHB2 SLAMF7 ZG16 CALD1 IGHA2 CD163 KLRB1 CDX1 LTB SLC51B UBE2J1 GZMM TRBC1 MLPH
13 CD27 FKBP11 OGDHL TRIM31 AFF3 TENT5C PCK1 ITGA1 TMPRSS2 SLC2A5 XBP1 OLFM4 UBE2J1 CREB3L1 ADAMTS1 JCHAIN FPR3 BCL11B ADH1C CXCR4 CEACAM1 SSR3 HOPX FYB1 WFDC2
14 SPCS1 CYBA HTR3E SLC51B PAX5 UBE2J1 MKI67 CCL4 SLC51B CTSE IGHA1 CFTR SPCS2 CLCA1 C1S DERL3 P2RY13 CD3E LGALS4 FYB1 MISP HERPUD1 CXCR4 ITK KLK1
15 HERPUD1 IGLV3-1 LRMP HHLA2 IGHD HSP90B1 KLF5 XCL2 TRIM31 ADRA2A IGKJ5 RAB25 POU2AF1 EREG GNG11 PRDX4 SLC8A1 ARL4C AGR2 CD28 ASS1 MIR29B2CHG CD3G CD52 TFF3
16 SEC61B IGKV4-1 CCSER1 SLCO2A1 VPREB3 SPCS1 MLXIP IL2RB TSPAN1 GUCA2A HSPA1B HNMT XBP1 TPSG1 SERPING1 IGKV3-15 FPR1 FYN GOLM1 TRBC1 KRT20 IGKC GPR171 BTG1 RNASE1
17 CD79A XBP1 POU2F3 CLDN23 HLA-DMB RAB30 VMP1 CD7 MISP MT1H IGHA2 PKDCC CCR10 LINC00342 COL4A1 SSR3 CLEC4E RORA UGT2A3 S100A4 SDCBP2 XBP1 TRBC2 TOMM7 FCGBP
18 FKBP2 TXNDC15 ALOX5 CLCA4 TNFRSF13C PRDX4 FAT1 CD8A KRT20 LUZP2 TNFRSF17 PLCB4 TRAM1 S100P CAVIN3 PIM1 AIF1 LCP2 CDC42EP5 ANXA1 LMO7 TXNDC15 CD160 RPS27 SERPINA1
19 XBP1 GNG7 MATK ABCB1 HLA-DQA1 FCRL5 VEGFA SH2D1B PLAC8 CDK18 AC245014.3 SH3BP4 SPAG4 ANKRD36C PLAC9 TXNDC15 LILRB2 FYB1 TSPAN8 GIMAP7 CGN SLAMF7 GPR65 SRGN SPINK1
20 CYBA SSR3 GNG13 LAMA3 CXCR5 XBP1 TRGC2 MUC13 GUCA2B SSR4 CDS1 NUCB2 RASEF FSTL1 MIR29B2CHG CD93 ICAM1 KRT19 RORA EMP1 SPCS2 KLRD1 RPS29 REG4
21 TENT5C SPAG4 CD300LF BTNL3 CD72 IGLC3 LINC01871 ASS1 DMBT1 SEC11C HMGB3 MANEA MB COX7A1 GAB1 LRRC25 RFLNB TCIM ARL4C PKIB CCR10 CRTAM GIMAP7 HEPACAM2
22 IGLL5 POU2AF1 KIT MEP1A IRF8 AC104699.1 LAYN SDCBP2 C2orf54 Z93241.1 MECOM PIM2 SPDEF EHD2 IGKJ4 MS4A4A GIMAP4 MT1E CD4 SULT1A2 CYBA GZMB PTPRC ANO7
23 SDF2L1 UBE2J1 AFAP1L2 GUCA2B HLA-DPA1 CD27 GPR171 CDHR5 HRCT1 BTG2 ATP2C2 HSP90B1 TFF3 ANTXR1 TPST2 C1QA FOSB MUC4 TRBC2 PLS1 GNG7 TRGC2 JUNB DLL1
24 LGALS1 SPCS2 HTR3C SELENOP LINC02397 LINC01781 TIGIT PLS1 MYOM1 GLA NXPE4 CD27 SDR16C5 RBMS3 TRIB1 TLR8 SAMSN1 CA2 CCR6 HPGD EAF2 GZMH RPL32 CREB3L1
25 SPCS2 CREB3L2 ZFHX3 SLC17A4 FCRL1 CYBA SLA2 HMCN2 HEPACAM2 SEC61B IGFBP4 FKBP2 SERPINA1 COL1A1 LY96 NFAM1 TNFAIP3 HSD11B2 PTPRC CDKN2B-AS1 ANKRD28 IL7R SPOCK2 FMOD
26 SUB1 TNFRSF18 ADGRG6 SMPD1 TLR10 CD38 CLIC3 CEACAM6 MT1G FKBP2 UGT2A3 SPCS1 MUC4 ITIH5 HERPUD1 SIGLEC1 CCR6 AKR1C3 LCK ANPEP MANEA TMIGD2 RPL28 TPSG1
27 POU2AF1 MANEA PLCG2 GPRC5A CCR7 ERLEC1 FYN DST DOCK4 PDIA4 TCEA3 HERPUD1 ENTPD8 COL14A1 IGKV3-20 ITGAX RUNX3 GPT LAPTM5 TSPAN1 RAB30 PTPRC RPS12 AGR2
28 CCR10 CD27 GRASP CEACAM5 EBF1 SPCS3 CD247 GPA33 MT1M DUSP1 EMP2 CYBA BCAS1 LAMA4 MZB1 C1QC MEPCE MT1X LCP1 PRSS3 LY96 FYN RPS27A ZG16
29 HSP90B1 SLAMF7 CGNL1 CASP5 HLA-DQB1 PIM2 GPR65 TINAG KRT20 CREB3L2 NUPR1 SPCS3 RFLNA EMILIN1 DPP7 IL1B JUND CHCHD10 FYN PLAC8 CD27 LINC02446 ARL4C KIAA1324
30 DUSP5 SPCS3 AVIL PRR15 FCMR SPCS2 TXK CGN GSN PRDM1 FERMT1 GNG7 SYTL2 COL6A1 SSR4 PTAFR SATB1 PLCE1 CREM HSD17B2 IGLV3-1 LCP1 RPL30 GALNT5
31 CD38 HERPUD1 PTPN18 FHL2 CYBB SLAMF7 PTPN22 CLDN4 LINC01559 FOS TCEAL9 SEC61B ATOH1 CFH CD79A SCIMP VIM MAOA TNFAIP3 MUC13 SPCS1 CD7 TXNIP MUC4
32 SPCS3 PDIA6 PAK3 TRPM6 LAPTM5 TCF4 ARHGAP9 SLC17A4 CKB CYBA PROM2 TENT5C GSN CRYAB BASP1 C1QB SLA FABP1 ARHGDIB CA4 CD38 PARP8 RPL21 ERN2
33 EAF2 CD38 ANXA13 KCNK5 LINC00926 FKBP2 CST7 GPRC5A AOC1 JUND CMTM4 DUSP5 FCGBP NID1 FCRL5 FCN1 TUBA1A CA1 CD69 CEACAM6 PDIA6 XCL2 RPL27 WNK4
34 TMEM258 TIMP1 PLEKHB1 XDH CD37 SERP1 HCST FABP1 CEACAM6 BCL2L11 GIPC2 CD38 LGALS9B FBLN1 RAB30 SLC1A3 TRAC CKB ETS1 ARL14 CREB3L2 TRAC HCST TMEM61
35 RAB30 EAF2 DPYSL3 CEACAM7 CD52 FBXW7 SYTL3 DSC2 TMEM176A GADD45B PLA2G2A IGLC3 FOXA3 RBPMS IGHV3-23 MSR1 RGS10 FAM3D CTLA4 CDHR5 POU2AF1 LCK DDX5 SLC12A2
36 GNG7 NUCB2 MAP7 SLC9A3 CXCR4 HERPUD1 LCP1 TCF7L2 SDCBP2 NFKBIA TSPAN6 ANKRD28 TCIM TFPI IGKV3-11 IGSF6 PIK3R1 SOX4 SRGN TMEM54 CRELD2 TMSB4X ARHGDIB MB
37 CRELD2 RAB30 IGSF21 MS4A12 CD74 PRDM1 KLRB1 COL17A1 CEACAM1 ANKRD28 TRIM2 AC104699.1 CAPN8 MGP LINC00582 RGS18 AQP3 TCEA3 BCL11B TMPRSS2 DUSP5 DUSP2 RPL38 NEURL1
38 PDIA6 SELENOM MARCKSL1 SLC26A3 SELL IGLC2 ADRB1 FXYD3 PDE9A MCL1 MGST2 PRDM1 QSOX1 LIFR XBP1 ADGRE2 DUSP1 IGFBP2 TMSB4X CLDN23 AC104699.1 THEMIS TMSB4X ARFGEF3
39 BST2 CD79A DKK3 DHRS9 BLK EAF2 FCGR3A PKIB FRMD1 UBE2S HMGCS2 CREB3L2 KLK1 COL5A2 IGKV1-17 TGFBI ALOX5AP DSP RPLP1 SFN SPAG4 ANXA1 RPS21 MCF2L
40 MANF TPST2 TPM1 AKR1B10 REL TRAM1 CD3E IFI27 MT2A TSC22D3 SNX7 ERLEC1 MINPP1 PLAT SEC11C RNF144B ZNF331 MT1M RPS12 GPRC5A NUCB2 KLRB1 KLRB1 AC005833.1
41 PDIA4 ANKRD28 ITPR2 PRAP1 LTB RPL36AL CD96 SLC44A4 NOTCH2 TMEM107 MRPL15 CRELD2 DST CAVIN1 JUND PTGS2 SRGN TXN TRAT1 C11orf86 TENT5C ID2 RPL34 GNE
42 SLAMF7 TENT5C FYB1 ABCG2 CD79B ANKRD28 CD3D PRSS8 MT1E HSPA1A LAPTM4B BCL2L11 SECTM1 FN1 CREB3L2 TLR2 STAT1 PHGR1 RPL28 SECTM1 SPCS3 BTG1 RPS26 PRUNE2
43 PPIB CNPY2 TREH TINAG HLA-DOB MANEA TRBC2 PHGR1 CARD16 NFKBIZ AKR1C3 PDIA6 TM4SF5 COL15A1 GLA PLA2G7 IGHV1-24 NXPE4 SLA GPA33 SEC61B MYBL1 RPLP2 CDC42EP5
44 PRDM1 CRELD2 SPIB CEACAM6 FAM177B B4GALT3 SH2D2A SGK1 CDHR2 IRF4 SH3RF2 DPP7 FAM3D LHFPL6 TIMP1 SIGLEC7 BTG2 PPP1R1B RPS27 LAMB3 CD79A PTPN22 UBA52 L1TD1
45 ANKRD28 KRTCAP2 LIPG GUCA2A POU2F2 DUSP5 SCML4 TMEM54 CEACAM7 SDF2L1 RNF186 SDF2L1 SCGB2A1 HTRA1 VIM FCER1A BST2 ATP8B1 GPR183 MYH14 TPST2 ALOX5AP GIMAP4 ANXA13
46 TXNDC15 SPCS1 GRK5 LRRC19 RIPOR2 SDF2L1 PTPRC KRT19 MT1X ANKRD37 NFIB IGHA2 TSPAN1 LMOD1 TNFRSF18 CD1E RASSF5 S100A14 LCP2 BTNL3 TRAM1 CTSW RPL19 PLCB4
47 NUCB2 C12orf45 SPTLC2 SMIM31 CD79A EVI2B EVL CA2 SLC20A1 AL360012.1 KCNN4 ST6GAL1 MUC13 ADAMTS4 EAF2 CD209 UBE2I UQCRC1 RPS27A DST TIMP1 PRF1 S100A4 DOPEY2
48 AC104699.1 AC104699.1 KCNQ4 TMCC3 SESN3 ITGB7 CD3G MYH14 CYR61 PPP1R15A MRPS35 BST2 SPATS2L MAP1B FKBP11 CD36 MYBL1 SULT1B1 TPT1 COL17A1 ARID5B TNFAIP3 RPS3A ELF3
49 PIM2 SEC61B TAS1R3 MUC12 GPR18 FAM49A TRGC1 FLNB MT1F NRARP MEST TIMP1 CEACAM6 MMP2 FOSB FGR PDK1 CES2 BTG1 CES2 BCL2L11 LINC01871 RPS3 TCIM
50 ISG20 JSRP1 ARHGEF38 SIRT6 FCRLA PABPC4 TNIP3 LMO7 TMEM176B KCNQ1OT1 FABP5 EAF2 BAIAP2L1 FOXF1 KRTCAP2 CSTA MPG SLC39A5 RPS29 PRSS8 SPATS2 PIP4K2A LAPTM5 QSOX1
51 ERLEC1 FKBP2 FRY PKIB LYN ELL2 GZMM EPCAM KRT19 CDV3 RARRES1 ALG5 IFIT3 FXYD1 BCAS2 CXCL8 RAC2 CISD3 SARAF HMCN2 HSP90B1 ARL4C SARAF TCEA3
52 CREB3L2 IGKV3-20 CCDC28B HPGD SWAP70 SUB1 SPRY1 HPGD TMSB10 CITED2 BEX3 SELENOM MFSD4A PTN DNAJC1 SIGLEC10 JUNB CLDN3 RPL32 DSC2 FKBP2 CD52 CD69 CRACR2B
53 FTL SDF2L1 RGS13 SDCBP2 GPR183 FAM30A CCL4L2 CDKN2B-AS1 GPA33 IGHM URAD DDOST SLC7A11 ABCA8 POU2AF1 ZNF385A RPL34 IGFBP4 MAF MEP1A PIM2 SRGN SLA GMDS
54 SELENOM ERLEC1 MTSS1 DIO3OS RNASE6 HSPA13 TRAC TMEM37 KRT8 H2AFX MAP3K21 SPATS2 LIPH MFGE8 SELENOM CLEC1A CD69 FXYD3 SAMSN1 DHRS9 MEI1 SLA RPL11 KLF4
55 KRTCAP2 TRAM1 HOTAIRM1 CA4 SNX10 DDOST PIP4K2A SFN CCNYL1 EGR1 ESRP1 TMEM258 CTGF NES MEI1 C1orf162 TIMP1 BCL2L15 RPL21 TMEM37 UBC CD69 RPS15A GALNT12
56 HLA-DQA2 LGALS1 PROX1 ARL14 BTG1 PDIA6 AOAH PDE9A FXYD3 PPP1R10 IMPA2 RAB30 WNK4 SYNPO2 EIF2AK4 CMKLR1 POU2AF1 CHP2 CD6 AHCYL2 PRDM1 S100A4 RPSA CDX2
57 SELENOS TMEM59 ATP2A3 LAMB3 RPS27 SEL1L XCL1 KRT8 CDHR5 DDIT4 BZW2 TXNDC15 B3GALT5 GJA1 SLAMF7 OLR1 ZBTB38 TFCP2L1 RPL30 ARRDC4 LGALS1 JAML RPS20 FAM3D
58 RPN2 SDC1 CAMP CEACAM1 BCL2A1 TMEM258 PIK3R1 CDHR2 MDK H3F3B SLC44A3 TPST2 CDC42EP3 RCAN2 PDIA6 CLEC9A GNAI2 ABCC3 GIMAP4 CLDN4 ST6GAL1 MYL12A RPS13 GDF15
59 TRAM1 MANF KRT18 CGN CD19 SSR2 CD8B CLDN3 S100A6 IER2 PKP2 BASP1 SCNN1A TNS2 ELL2 IRAK3 ETS1 SMIM22 RPL38 IFI27 TMEM258 ARHGDIB RPLP1 DNAJC12
60 LMAN1 CLPTM1L LIMCH1 LINC01559 RPS23 RPN2 ARHGDIB ABCB1 MISP ZFP36 GPX2 SUB1 SMIM5 CRIP2 SPCS2 NLRP3 KDM5A TMEM54 CNOT6L TMBIM1 DDOST BCL11B PFDN5 SYTL2
61 SERP1 BST2 HIP1R LRRC1 RPL13A ADA2 TMSB4X LAMB3 S100A10 DNAJB1 ITGA2 IGLC2 ITLN1 CYGB UBE2J1 GFRA2 NFKBIZ LGALS3 RPS3A HHLA2 SELENOM RUNX3 RPL9 URAD
62 SRPRB SRPRB RASSF6 RHOF SLC2A3 LMAN1 IL18RAP ATP1B1 FLNB RPN1 HSDL2 KRTCAP2 FHL2 PMP22 TENT5C LST1 RPL24 CDH17 ALOX5AP JUP ELL2 SYTL3 RPL23 MT1G
63 BASP1 ALG5 SOX9 CLRN3 RPL19 CLPTM1L COTL1 ARL14 PROX1 RASD1 AKR7A3 EVI2B SDCBP2 FRZB TMEM208 MS4A7 TNFRSF17 HADH RPLP2 ST14 PABPC4 LAG3 RPL37 TPM1
64 EMP3 RPN2 IL13RA1 IL18 RPS8 ISG20 ALOX5AP HHLA2 PRSS3 RHOB RAB32 VIM AC128688.2 COL18A1 SPCS1 IL1RN IGLV1-44 CA12 RPS15A TMEM45B SUB1 ITGA1 EIF1 MUC5B
65 SEL1L HSP90B1 MGAM2 TJP1 RPL21 MANF TRBC1 XDH TTC39B BRD2 LCN2 PABPC4 SMIM33 SNCG MANEA NCF2 CD44 SLC26A2 CD53 CA2 ALG5 SH3BGRL3 RPL13A VSIG2
66 PABPC4 MEI1 IGSF3 TMEM45B RPL23A IGHG2 ID2 RFK CA2 AC020916.1 VSIG10 FBXW7 GALNT5 GUCY1A1 SPATS2 LILRA5 EIF1 EPCAM SH3BGRL3 SPATS2L SDF2L1 REL RPL7 FOXA3
67 TPST2 DUSP5 SMTN RFK RPS20 BASP1 PTGER2 FBLIM1 SCIN MIR29B2CHG CNN3 DNAJC1 VSIG2 TMEM47 PIM2 LILRB5 TSC22D3 CES3 RPL11 EPCAM RPN2 CXCR6 CCR7 LGALS4
68 ALG5 DDOST DEFB1 EPS8 RPS13 SELENOS PARP8 TSPAN8 HSPB1 IRF1 SPINK1 MANF SAMD9 SLIT3 KLHL6 P2RY6 PHF20 CYC1 MYL12A XDH SEC62 TNF RPS28 FRYL
69 FCRL5 FTL CD14 ASS1 CR2 NUCB2 UBASH3B LGALS3 PHGR1 HSP90AA1 RHBDL2 SELENOS IFI27 EDNRB FNDC3B THBD RHOH PPP1R16A CD247 EPS8 PLPP5 CCL4L2 RPL31 IGFBP2
70 SRM FCRL5 FGFR4 ITPKA RPL11 REEP5 CREM HNF4A MYH14 TUBB4B HMGN5 ARID5B LINC01559 MXRA8 JUN C5AR1 IGHA1 SPINK1 RPS20 PDE9A SDC1 NR4A2 RPL13 SCNN1A
71 TMED10 DPP7 PBXIP1 MIER3 RPL23 IGLV2-14 SAMSN1 SLC6A8 IFI27 AL627171.1 IDH1 RPN2 CEACAM1 TNS1 HSP90B1 P2RY14 TNFRSF18 KLF5 RPL27 RHOC FBXW7 ZFP36L2 CD48 SLC4A7
72 SEC61G SEC62 SLCO3A1 KCNK1 RPL32 LGALS1 CXCR6 EMP1 CLDN3 SIAE ISG20 AGR2 CNN1 ST6GAL1 TYROBP MZB1 ATP5MC3 HCST TMEM171 MANF ETS1 RPL23A B3GNT6
73 DPP7 TMEM107 NCMAP UPP1 RPS3A MIR29B2CHG PTGER4 SELENBP1 SCRN1 MFHAS1 ANKRD37 FAM83E CYR61 ALG5 HLA-DMB SIAH2 CORO2A RPL37 UPP1 AC104024.1 DDX5 SKAP1 HSD11B2
74 ELL2 TMEM258 DAB2 SCNN1B RPLP2 SMARCB1 GLIPR1 RHOC GOLM1 TNFRSF11A SEL1L KCNK1 COL6A3 PDK1 ITGAM FOS ACADS RPSA SERINC2 SEL1L RARRES3 RPS19 ETS2
75 GLA PDK1 FES TMBIM1 RPL27A CREB3L2 SIRPG CA1 CLDN4 CISD1 TMEM59 TCF7L2 AKAP12 DUSP5 RTN1 RPL30 TMEM238 RPL19 SPINT1 PPIB XCL1 MYL12A ATP2C2
76 CLPTM1L GAB1 EIF1B LMO7 RPL37 CCR10 RARRES3 ZBTB7B TM4SF5 AIMP2 FOSB SMIM6 LUM CD55 DNASE1L3 RPS4X COX5B GPR171 PRAP1 JUND TRBC1 TPT1 SNORC
77 WARS PIM2 L1TD1 CDKN2B SMAP2 MEF2C LCP2 ARRDC4 NBPF14 TRABD2A TSC22D3 APOL1 CSRP2 RPN2 S100A9 RPS27A MECOM RASGRP1 CASP5 FTL ZNF331 TNFAIP3 HMGCS2
78 ICAM2 SELENOS HEPACAM2 C1orf116 CD53 IRF4 SLA TPRN GUCY2C GGCT LMAN1 CLDN4 FBN1 TIMP2 SPI1 RPL32 AC103702.2 DDX5 NBL1 GAB1 ACTB RPS6 SH3PXD2A
79 OSTC ST6GAL1 BCAM PLS1 RPS27A TMED10 CD52 CES2 VIPR1 CDX2 DNAJC3 MX2 ECM1 BTG2 PILRA IRF4 SFN UBA52 SLC44A4 GLA SCML4 ETS1 ALDH1A1
80 LMAN2 TSC22D3 FURIN PLEKHG6 LCP1 RPL10 SMIM3 MGLL PHLDA2 SLPI KLF2 B3GNT6 CCL2 SPAG4 C3AR1 RPL19 AKR7A3 LDHB FABP1 AC009404.1 NCR3 PIK3IP1 NUPR1
81 DDOST H1FX CHDH TMPRSS4 RPL18A WARS CORO1A CLDN23 SMIM22 PPIC PDIA4 BEST2 TPM2 PRDM1 HRH2 NAP1L1 NUPR1 CD48 PI3 KRTCAP2 LAPTM5 RPS14 MT1E
82 UBC MIR29B2CHG ACTN1 MISP RPL10A ZBP1 CD2 SSFA2 CDC42BPA SMAGP JUND IFIT1 CCDC80 ANKRD28 LYZ RPL35A SIAE RPS6 CLDN3 BST2 RPL28 RPS24 RASD1
83 FBXW7 TMED10 PPDPF ACOT8 RPS16 IGHV3-74 LAG3 AHCYL2 TMEM54 SLC9A2 IGHV3-7 ELF3 BGN IGKV4-1 C5AR2 MDM2 AMN AC026979.2 GNA11 TXNDC11 CLEC2D ICOS RARRES1
84 VIM FAM30A ANXA4 KRT20 RPL30 LMAN2 LINC02446 PIGR EPCAM NDC1 SERP1 TMC5 PGM5 MIS18BP1 S100A8 CD48 S100A16 ITK KRT8 RPL10 IFNG RPL27A SMIM14
85 PDK1 ICAM3 BIK JUP RPS11 DPP7 SEPT7 MXD1 CLCA4 FAM171A1 IGLV3-1 PLAC8 GPC6 PABPC4 SDS XBP1 ZNF703 RPS19 MIER3 ERLEC1 SKAP1 RPS16 GALNT3
86 RPL10 DNAJC1 SNORC SMPDL3A RPL9 RPL7A SRGN CA4 ADIRF NIPSNAP3A H1FX DDX60 C1R PELI1 S100A12 FKBP11 OLFM4 PTGER4 GIPC1 CLPTM1L CD48 RPS7 MT1X
87 RPL36AL PRDM1 PTPRJ MXD1 RPSA OSTC LCK CDH17 MUC3A CASP6 JUN LMO7 CSPG4 SDF2L1 HAVCR2 RPS15 DDAH1 RPL13 SCNN1B SRPRA RPS12 RPL10A BCAS1
88 BTG2 UBC TLE4 PTPRH RPL12 ORAI2 IFNG KRT18 TMPRSS2 WDR12 UBC TMEM173 TMTC1 TGFB1 HCAR2 CREB3L2 LEFTY1 RPL9 TINAG FNDC3A JUNB RPS15 EHF
89 RPL22L1 ISG20 ASMTL AHCYL2 RPS21 ST6GAL1 OXNAD1 PRSS3 LGALS3 CKMT1A RPL36AL TRIM31 FBLN2 SEC62 SDC3 GBP1 SLC25A10 RPS13 FXYD3 OSTC RPS27 LCP1 SOX4
90 ICAM3 LMAN1 PIK3R5 PLIN3 LINC01781 CSF2RB TNFRSF1B MIER3 TSPAN1 EDIL3 IGLV2-14 MGLL PDGFRA H1FX VCAN IGHA2 ID1 LAT PRR15 SELENOS CRYBG1 RPL35A EMP2
91 ST6GAL1 VIM VAV1 PLPP1 RPL28 BST2 LDLRAD4 CDKN2B ATP1B1 BRI3BP BTG2 MST1R GPX3 FAM174A HLA-DRB5 NACA PAPSS2 RPL13A RFK DNAJC3 CORO1A ITGB2 ENTPD8
92 SPAG4 LMAN2 C3orf70 PLAUR RPS2 GLA CXCR4 ETNK1 MUC13 PTGDR LMNA KRT20 GLT8D2 ARID5B CYBB RPSA CFTR CLEC2D RHOF VIM COTL1 RPS18 H1F0
93 SIL1 ARID5B KRT8 PRSS3 RPS12 TMEM208 CKLF GGT6 FA2H TRAP1 IGKV3-20 CLDN3 NKX2-3 FTL HLA-DOA RPL10 ELF3 TOMM7 SIRT6 DNAJC1 EVL FKBP5 PPP1R1B
94 RGS1 OSTC TRHDE SFN RPL38 RPL18 ZNF331 PLEC ID1 GJB1 IGHV3-23 IFIT2 ISLR TMEM59 RASSF4 ANKRD37 EHF JUNB TRPM6 RPL3 PTMA RPL36 IL13RA1
95 RNASET2 ANKRD37 MYO1B TMPRSS2 RASSF2 PDIA4 IKZF2 HKDC1 SGK1 GSTO2 IGKC RSAD2 FOXF2 CRELD2 GNB4 RPL11 PTPRF ACTB SLC17A4 REEP5 CNOT6L RPL12 ESRP1
96 IRF4 IGKV3-11 EHF PDGFA SNX2 KRTCAP2 PYHIN1 GNG12 FABP1 PALLD TRANK1 MFAP4 SEL1L TFEC RPL14 PRDX5 RPS3 PHGR1 TSC22D3 TXNIP PTMA EPHB2
97 B4GALT3 IGKV1-5 LUC7L3 C3orf85 RPS29 PPIB CBLB ARL4A USP2 SYT13 SMIM14 ABI3BP SEC61B CCR1 AC005261.1 RAB25 COTL1 ENTPD8 H1FX CREM GATA3 GLUL
98 RPL3 JUND S100A6 GIPC1 RPL27 ICAM3 LAPTM5 C11orf86 S100P EPHX2 FXYD3 GJA4 ICAM1 ACSL1 EEF1A1 URAD RPL27A LINC02023 ICAM3 PTGER2 RPS10 BACE2
99 LY96 BTG2 PIK3CG STX19 RPS6 RPL3 CLEC2B TP53I3 DST MAOA ARL14 GUCY1B1 TRAM1 CD302 DCAF5 KRT8 FKBP5 ABCB1 TMEM59 CALM1 NAP1L1 GSE1
100 SPATS2 GLA TBC1D2B TICAM1 RPS7 SRM SSH1 DHRS9 LYPD8 KITLG MCF2L SLC7A2 PDE4B HLA-DQA1 RPL5 ATP5F1D RPL34 KRT19 RPL36AL LCP2 RPS23 PCK1

separation of epithelial, stromal and immune cells

Cell split