knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p012t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p012t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p012t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 6185 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 4122 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 3 4 5 6 7 8 9
1 IL7R DERL3 IGHA1 DPEP1 CCL5 PIGR S100A9 DPEP1 CLCA4 LINC01871 IGHA1 LEFTY1 DERL3 IDO1 IGFBP5 NOS2 HMGCS2 MS4A1 TPSAB1 TNFRSF17 CCL5 IGHG4 FOXP3 MUC2 C1QB KLRB1
2 RPS27 FKBP11 MZB1 MLXIPL GZMK PLA2G2A S100A8 KRT23 CEACAM7 IL22 DERL3 RNF186 TNFRSF17 FCER1A IGFBP7 DUOXA2 CA1 VPREB3 CPA3 JCHAIN HOPX IGHG3 CTLA4 CLCA1 C1QA CD3D
3 RPS27A PRDX4 POU2AF1 CPNE7 KLRD1 PCK1 VCAN ASCL2 GUCA2A IL26 FKBP11 SLPI CD79A HLA-DQB1 CXCL14 SMIM5 MT1H TCL1A MS4A2 PRDX4 CD8A IGHG2 TIGIT ZG16 C1QC CD69
4 CD2 IGKC FKBP2 RNF43 NKG7 SELENBP1 S100A12 BMP7 SLC26A3 CXCR6 MZB1 ADH1C MZB1 CD1C COL3A1 TRIM40 FABP1 CD22 HPGDS IGHA1 GZMA IGHGP IL2RA SPINK4 AIF1 CD3E
5 RPS12 MZB1 IGKJ5 EPPK1 XCL1 PHGR1 CD300E CLDN2 GUCA2B ICOS JCHAIN AC008397.1 JCHAIN CD1E COL1A2 XDH CHP2 BANK1 GATA2 DERL3 TRGC2 IGHG1 IL1R1 ITLN1 HLA-DRB1 CD2
6 CD3E SEC11C IGHA2 OLFM4 CD8A FABP1 TNFAIP6 GAL AQP8 SPOCK2 IGKC KCND3 POU2AF1 CSF2RA A2M DHRS9 CA2 IGHD SLC18A2 SSR4 NKG7 MZB1 ICOS REP15 MS4A6A TRAC
7 RPL32 CD79A JUN DMBT1 XCL2 CDHR5 FCN1 PTPRO DUOX2 CD3D TXNDC11 PPIC SSR4 FLT3 LUM C11orf86 PLA2G2A CXCR5 RHEX MZB1 CXCR4 IGHM TBC1D4 SPDEF CD14 LINC01871
8 TRAC TNFRSF17 FKBP11 GPX2 CTSW KRT8 AQP9 FERMT1 CA4 CD3G XBP1 LRRC19 IGHA1 ITGAX SPARC CASP5 UGT2B17 FCRL1 HDC SEC11C CD69 CD79A CD3D BEST2 CYBB CD3G
9 RPL34 SSR4 SDF2L1 REG1B GZMA LGALS4 AC245128.3 SBSPON CEACAM1 LCK HERPUD1 S100A16 FKBP11 CD207 COL1A1 TGM2 C10orf99 AFF3 KIT FKBP11 KLRB1 POU2AF1 MAF WFDC2 STAB1 CREM
10 RPLP1 JCHAIN JCHAIN REG1A HCST FAM3D OLR1 FAM3B SELENOP CCR6 SSR4 AGR3 PRDX4 HLA-DOA SPARCL1 TRIM31 SLC26A3 CR2 KRT1 EAF2 KLRD1 HERPUD1 FAM184A TFF3 MPEG1 IL7R
11 KLRB1 IGHA2 SDC1 TNS4 CCL4 UGT2B17 NCF2 DACH1 TMIGD1 KLRB1 CD79A IGFBP2 IGHA2 CPVL MGP SLC15A1 MT1M LINC00926 MAOB HERPUD1 CTSW XBP1 LAIR2 HEPACAM2 MRC1 TRBC1
12 RPS19 HERPUD1 HIST1H2BG LCN2 TRGC2 MUC12 FPR1 MTTP CDHR5 CD3E PIM2 C15orf48 HERPUD1 HLA-DRB1 CALD1 CLCA4 SELENBP1 TNFRSF13C IL1RL1 IGKC CD3E PIM2 TNFRSF4 ST6GALNAC1 CPVL RPLP1
13 RPL21 IGHA1 HDLBP SOX4 HOPX ELF3 ACSL1 FAM84B TSPAN1 RORA PRDX4 S100A14 SEC11C KCNMB1 PTGDS TFF1 PCK1 HLA-DPB1 GCSAML CD79A CD52 SSR4 TNFRSF18 ANO7 HLA-DMB LTB
14 RPS29 SDF2L1 SEC61A1 MYC RPS27 LEFTY1 MNDA ZNRF3 PI3 GPR171 IGHA2 SULT1B1 IGKC CFP TPM2 CTSE HRCT1 PAX5 TMEM233 XBP1 HCST IGLV2-14 ARID5B KLK1 DNASE1L3 SPOCK2
15 TPT1 SPAG4 RRBP1 CLDN4 CXCR4 KRT18 MIR3945HG CLDN1 SLC9A3 PDE4D TNFRSF17 CD24 UBE2J1 HLA-DQA2 DCN EMP1 CEACAM7 TLR10 SLC45A3 FKBP2 CD2 DUSP5 LINC01943 ATOH1 CSF1R ICOS
16 CD3D FKBP2 TENT5C FAT1 BTG1 CLDN3 CLEC4E SP5 KRT20 SH2D2A IGKJ5 PLA2G2A XBP1 HLA-DQA1 RARRES2 DUOX2 S100A14 HLA-DRA SVOPL SSR3 PRF1 IGKC TRBC2 FCGBP FCGR3A TMSB4X
17 CD52 IGKJ5 CD79A NOTUM CST7 MT1G C5AR1 PCP4 MS4A12 CD2 TENT5C UGT2B17 FKBP2 CLEC10A C1S CDA CD24 HLA-DRB5 CAVIN2 CCR10 CD3D IGLL5 F5 REG4 IGSF6 CXCR4
18 RPS14 XBP1 SSR4 SOX9 TMSB4X CLDN4 CD14 PROX1 GPA33 IL2RB PDK1 TMEM246 SDF2L1 TLR10 TIMP3 CEACAM7 CDHR5 HLA-DPA1 CALB2 SPCS1 TRBC2 IGHV3-21 TRAC TPSG1 MS4A4A S100A4
19 RPL11 SSR3 DERL3 CYP2W1 NR4A2 CD24 AIF1 CYP2W1 DUOXA2 GZMA SDC1 KCNK1 IGKJ5 ARHGAP22 COL4A1 HRASLS2 CDKN2B-AS1 SPIB RGS13 UBE2J1 CD7 ST6GAL1 CD28 B3GNT6 PLA2G7 TNFAIP3
20 RPS15A CCR10 HSP90B1 IFITM3 IFNG HMGCS2 IL1B ENAH FABP1 GZMB SSR3 PLA2G10 PIM2 HLA-DMB COL6A2 SAA1 AOC1 FCMR CLU SPAG4 TRAC TENT5C CCR6 RETNLB CLEC10A RORA
21 RPLP2 MANF XBP1 BMP7 DNAJA1 C10orf99 SLC11A1 YAP1 TRIM31 PTPN22 SEC11C MUC1 CCR10 CLIC2 NNMT PDE9A CKB BLK CTSG POU2AF1 TNFAIP3 PRDX4 CD247 RAP1GAP MS4A7 LCK
22 BTG1 SPCS1 PIM2 ELF3 ID2 AMN PTX3 NOTUM CEACAM6 CREM ZNF791 AKR1B10 AC104699.1 HLA-DRB5 COL6A3 ANGPTL4 FXYD3 SWAP70 PVALB SPCS2 PTPN22 DERL3 CD2 FAM3D ENPP2 CD52
23 CXCR4 TXNDC15 Z93241.1 B4GALNT4 GNLY KRT19 CSTA GNG4 MUC12 TRAC FKBP2 LGR4 RAB30 CD86 COL4A2 CA4 HSD11B2 RUBCNL ADCYAP1 SELENOM CST7 ANKRD28 IL2RB ERN2 SLCO2B1 TRBC2
24 RPL19 CRELD2 ANKRD28 TBX3 CD160 NXPE1 MPEG1 GDF15 CDA SLC4A10 SEL1L VSIG2 MIR29B2CHG SLC8A1 FN1 EPS8L1 ATP8B1 CD83 LTC4S GNG7 CD3G SEC11C LTA NEURL1 CD93 PTPRC
25 RPL30 SPCS3 HERPUD1 NKD1 RPS12 FXYD3 LILRB2 BMP4 SDCBP2 TRBC2 BTG2 SATB2 DUSP5 PLD4 COL18A1 LAMA3 VSIG2 FCER2 SCN7A HSP90B1 BTG1 TNFRSF17 LTB MUC4 HLA-DQB1 PDE4D
26 S100A4 TMEM59 SIL1 GDF15 RPS27A ATP8B1 RBP7 ETV4 COL17A1 CD69 CREB3L2 RAB25 TXNDC11 AIF1 THY1 PTPRR AKR1B10 HLA-DQA1 TIMP3 NUCB2 GZMK BTG2 CD7 HSD11B2 C3AR1 GPR65
27 LTB NUCB2 IGLC2 CTTNBP2 CD7 SOX4 FPR2 RBP1 CDHR2 RGL4 SPAG4 TNFRSF11A FCRL5 SPI1 COL6A1 CDHR2 MAOA HLA-DRB1 IL1RAPL1 MANF TMSB4X IGKJ5 SPOCK2 MCF2L RASSF4 RPS19
28 RPS3A SELENOM HSH2D SPINK1 MYL12A PPP1R1B TYROBP KCNMB4 SERINC2 CTLA4 MIR29B2CHG CKMT1B SSR3 SH2B3 PLAT FA2H PIGR IRF8 RAB27B JUN ANXA1 JCHAIN CD3E WNK4 CD163 CD7
29 RPL13A GNG7 PDIA4 TMC5 GZMH GPX2 HCK MAL2 GPRC5A CD52 HIST1H2BG ATP8B1 ANKRD28 HLA-DPB1 ADAMTS1 CEACAM1 KRT19 HLA-DQB1 MITF SDF2L1 PTPRC FKBP11 TNFRSF9 MLPH LILRB2 BTG1
30 RPL37 LMAN1 AC007952.4 LRP4 CD3G CA2 CFP EPHB2 PIGR CD40LG SLAMF7 CKMT1A CRELD2 PPP1R14A PDGFRA TMEM37 TSPAN1 CXCR4 VWA5A PDK1 GZMM RAB30 LCK ENTPD8 NRP1 RPS12
31 RPL38 UBE2J1 TXNDC11 KRT18 CD2 TSPAN8 CYBB AKR1C3 PRSS8 SIRPG DNAJC1 C10orf99 SPCS2 LST1 FSTL1 GUCA2A LGALS4 CD74 HS3ST1 IGKJ5 IL7R PRDM1 HS3ST3B1 LGALS4 SLC8A1 RPS27
32 RPL28 IGLV3-1 BTG2 PROX1 CD3D CDC42EP5 ACOD1 TSPAN6 AL365226.2 S100A4 HSP90B1 SPINK5 MANF LGALS2 FBLN1 SAA2 GOLM1 MARCH1 ALS2 SEL1L CD160 FBXW7 STK17B PIGR ADAP2 CLEC2D
33 TRBC1 SPCS2 IGLC3 PGGHG DDX5 AC103702.2 RETN APCDD1 PHGR1 ITK JUN CDX1 HSP90B1 MRC1 ADH1B EGLN3 CES2 CD37 DLC1 CRELD2 NR4A2 HSP90B1 ZC3H12D SCNN1A FPR3 IL2RB
34 EIF1 HSP90B1 PDK1 AC136475.3 RPS29 SLC44A4 CD93 CDCA7 TMEM54 LTB SDF2L1 CREB3L1 EAF2 FGR COL14A1 HHLA2 FAM3D LINC01781 TYROBP FCRL5 GPR65 BHLHE41 PBXIP1 CDC42EP5 RGL1 CCR6
35 RPL13 ERLEC1 HSPA1B FOXQ1 STK17A S100A14 LST1 TM4SF1 TMPRSS2 FURIN GYPC DDAH1 TXNDC15 P2RY14 EMILIN1 TMPRSS2 SULT1B1 LY86 STXBP6 SEC61B RPS27 TRIB1 LAYN CREB3L1 AXL TMIGD2
36 CD3G SEL1L IER2 HKDC1 RARRES3 TCEA3 SMIM25 SOX9 MUC13 CD96 ST6GAL1 GOLM1 SPCS1 MNDA LAMA4 SLC9A3 GPA33 PARP15 PIK3R6 CLPTM1L IFNG SDF2L1 TNFRSF1B SERPINA1 C1orf54 TRAT1
37 TRBC2 PDIA6 CCR10 IFI27 CD69 KLF5 G0S2 RAB25 AOC1 TANK CYBA SLC9A2 SPCS3 ZNF385A GNG11 RSAD2 MOGAT3 SELL LIF MEI1 PTGER4 ELL2 CD3G ELF3 DAPK1 PFN1
38 JUNB CYBA NEAT1 VWA1 CD52 CA12 CXCL8 AC021218.1 MISP MAF POU2AF1 MUC4 LMAN1 P2RY13 COL5A2 SDCBP2 LINC00483 EBF1 AKAP12 TMEM59 REL SPCS2 IKZF2 B4GALNT2 SIGLEC12 ARHGDIB
39 ANXA1 FCRL5 UBE2J1 RASEF GZMM CDX1 EREG SYT7 PDE9A TMSB4X RAB30 TMEM30B CYBA MARCH1 TFPI PLOD2 GPT CD19 ALOX5AP TENT5C TRBC1 SSR3 PTPRC KRT8 AOAH STK17B
40 RPL23A EAF2 FOSB ANO9 ZFP36L2 MUC4 TREM1 ZNF703 SLC44A4 CLEC2D HSPA1B PPP1R14D TENT5C PKIB SULF1 CEACAM6 SIAE LTB CD9 TXNDC15 XCL2 AC007952.4 BTG1 VSIG2 CD209 TPT1
41 TMSB4X AC104699.1 HSPA5 EPHB2 TRBC1 TMEM54 LILRA5 BACE2 SFN PTPRC SPCS2 HEPH PDIA6 IGSF6 BGN PI3 DHRS11 CD79B PTGS2 RAB30 XCL1 SEL1L3 S100A4 KRT18 FCER1G MYL12A
42 RPS13 CLPTM1L KCNQ1OT1 NOXO1 TRAC DSP PTGS2 RNF43 PTPRR TNFRSF25 LMAN1 SEMA6A SEL1L HLA-DRA EDNRB GPA33 LINC02023 RPL19 KIAA1549 AC104699.1 MATK HDLBP SKAP1 SPINK1 VSIG4 RPS27A
43 CD69 PIM2 TRIB1 AC103702.2 RPL38 MT1E NLRP3 IFITM1 HHLA2 CD247 TPST2 GPA33 LGALS1 JAML COL15A1 C4BPA B3GALT5 CCDC50 HPGD ISG20 DNAJA1 CREB3L2 IL1R2 SYTL2 CMKLR1 REL
44 DNAJA1 KRTCAP2 DUSP5 TACSTD2 CALM1 GOLM1 ITGAM MLXIPL DHRS9 STK17B ISG20 MAOA BHLHE41 GRASP PLAC9 IFIT2 CDC42EP5 RPL13A PTGS1 PDIA6 PDCD4 TXNDC11 CMTM6 L1TD1 LILRB5 RPL28
45 RPL27 TMEM258 IGLV2-14 SLC12A2 ANXA1 SMIM22 FGR NEBL DST LAPTM5 ARID5B SHROOM3 PRDM1 HLA-DPA1 AEBP1 HK2 KRT8 RPL11 LYL1 SDC1 ID2 TCF4 CXCR6 SLC44A4 CD36 LCP1
46 RPS20 MEI1 TMEM107 KRT8 RPL21 MTRNR2L12 HRH2 NFIA TMEM37 FYN SPCS3 DSG2 LINC02362 SCARF1 COL12A1 LMO7 MT1G RPL32 CATSPER1 CYBA CCL4 ISG20 UCP2 AGR2 SIRPA THEMIS
47 RPS6 PAIP2B SEC11C NAALADL2 RPS15A SLC26A3 AC020656.1 HNF4A ASS1 CD28 UBE2J1 AKR7A3 HSPA13 CCL22 EDIL3 SLC6A8 CA12 RPS11 FCER1A SPATS2 DDX5 NR4A1 RASGRP1 PHGR1 CCR1 ACTB
48 TNFAIP3 SEC61B CD27 ARHGEF38 MALAT1 S100A6 CD36 TMEM45B IFI27 ETS1 GNG7 AGR2 SELENOM RAB31 COL5A1 CIDEC PHGR1 RPS27 RAB37 SELENOS LINC01871 AC104699.1 RGS1 GALNT5 ADGRE2 RPL37
49 RPL9 ALG5 EGR1 BACE2 RPL23A HES1 VNN2 VIL1 TRPM6 FYB1 TXNDC15 CA12 IGLV3-1 WDFY4 FBN1 SLC26A3 SLPI LAPTM5 ANXA1 LMAN1 CLEC2D CD79B FYB1 CLDN4 MMP12 BCL11B
50 RPS3 SDC1 NR4A1 CLDN3 TNFAIP3 ST14 BCL2A1 SCD HPGD STK17A SEL1L3 PDZK1IP1 SEC61B CLEC7A MXRA5 ACHE GGT6 CLECL1 GMPR BTG2 S100A4 MIR29B2CHG MAST4 PADI2 CD68 CD96
51 FYB1 LY96 AL360012.1 ZNF703 RPS3 CA1 CFD SYBU PRSS3 PFN1 HSPA1A PIGR BTG2 TYROBP SDC2 PLS1 SLC44A4 CD52 A2M-AS1 SPCS3 ZFP36L2 LMAN1 SLAMF1 NXPE1 MSR1 GPR171
52 DDX5 SLAMF7 SSR3 C2CD4A CD3E FRYL CLEC7A GPX2 LMO7 AC020571.1 CCDC69 DSC2 PDIA4 SCIMP LHFPL6 GUCA2B ADIRF HLA-DMB GLUL IGLV3-1 RGCC SPATS2 IL26 ARFGEF3 PTAFR PTPN22
53 RPS21 SELENOS FBXW7 TCIM JUNB DMBT1 CLEC4D PLEKHS1 PLAC8 ARHGDIB CLPTM1L FAM3D SPATS2 BATF3 CAVIN3 SELENOP MS4A12 TCF4 TMEM44 ALG5 MYL12A JUN PBX4 TPM1 CCL3L1 RPL32
54 TOMM7 MANEA IGLL5 CEBPD RPL30 TLCD2 RAB31 MSX2 CD177 RASGRP1 RORA KLF5 FNDC3A HLA-DMA CRIP2 CDHR5 AMN GPR18 ARMH1 KRTCAP2 CD247 IGLC2 CREM ATP2C2 MARCH1 IL22
55 MYL12A CHPF UBC CCND1 EIF1 UQCRC1 IRAK3 NFIB CLDN4 IL7R SELENOS B3GNT7 ELL2 CEACAM4 PXDN GPRC5A CES3 RPL21 SAMSN1 IER2 RPS12 CD27 HLA-A FXYD3 SLAMF8 RPLP2
56 BCL11B CD38 PPP1R15A CXCL1 DUSP2 HIST1H4C IL1RN FZD3 MYH14 IL17A CCR10 PKP2 NUCB2 CD109 ITIH5 LAMB3 SI RPL18A CAPG UAP1 GZMB FCRL5 DUSP16 GSN HLA-DOA RPS29
57 RPL10 LINC02362 PTCH2 CLU TRDC HEXIM1 C1orf162 CEL C1QTNF12 LCP2 MYCBP2 RHBDL2 MEI1 PLEK MMP2 PDZK1IP1 DENND2A RPS21 PAQR5 LY96 LCP1 TP53INP1 SIRPG CA12 P2RY6 CD40LG
58 RPL3 SRPRB FAM30A PLXNB1 HLA-A MT2A STEAP4 DSC3 FXYD3 TNFRSF1B H1FX LGALS4 TMEM59 OGFRL1 CYGB PRSS8 KRT20 POU2F2 CADPS ERLEC1 RPS29 FKBP2 IL17A HMGCS2 CCL4L2 FYB1
59 RPSA JSRP1 DPP7 TNFRSF10A CRTAM CHCHD10 IGSF6 ZNF704 CYP3A5 TRBC1 HSPA5 TSPAN8 TMEM107 CD80 CDH11 TRIM15 PRSS3 BASP1 BEX4 SLAMF7 GPR171 UBE2J1 SRGN DLL1 TFEC ALOX5AP
60 RPS23 TMEM208 CRELD2 EPCAM H3F3B GUCA2A HCAR3 PERP SMIM22 AC058791.1 HSP90AA1 TRIM2 CHPF LY86 ECM1 TSPAN1 TST RPLP2 SMYD3 CREB3L2 RPS19 DNAAF1 GBP2 CLDN3 FGL2 SRGN
61 CALM1 PDK1 MAPKAPK2 VIL1 TSC22D3 PRDX5 PLEK TACSTD2 GSN SH3BGRL3 RGCC GNG12 HIST2H2BE CACNA2D3 FXYD1 SCNN1A TMEM54 SMIM14 ZNF618 DUSP5 PARP8 IGKV4-1 RORA KIAA1324 RAB31 CALM1
62 RPS28 POU2AF1 SQSTM1 SELENBP1 TRBC2 SPI1 SPINK1 XDH CD7 ICAM2 CDH17 TP53INP1 ARHGAP31 FERMT2 AOC1 ADH1C LYL1 ADGRE2 PIM2 RARRES3 Z93241.1 TNIP3 NEDD4L S100B RPL10A
63 ZFP36L2 ICAM2 AL355075.4 ETS2 RPS19 PRAM1 CEMIP SLC6A8 SLAMF1 DUSP5 CBLC TRIB1 SIGLEC10 KANK2 MISP PLCE1 RPL37 CSF1 ANKRD37 CD96 TMEM107 ZNRF1 URAD SASH1 EVL
64 RPL5 LGALS1 GLA MYO6 PTMA CPVL CDH1 LAMB3 ARPC2 ANKRD28 SLC4A4 GNG7 NCF2 RBMS3 SERINC2 TFCP2L1 RPS20 CD69 TXNDC11 CREM SOCS3 SLA FRYL SLC15A3 GMFG
65 PFDN5 MIR29B2CHG IGHV4-39 RMRP LCK FGL2 MEST PDZK1IP1 TNFRSF18 PABPC4 PTPRK SDC1 IL1B GPC6 MYO7B MUC12 RPS8 ATP6V0A2 ANKRD28 GNLY SEC61B ETS1 AOC1 MMP9 RPS15A
66 RPS26 DUSP5 HSPA1A SFN UBE2S CD68 LACTB2 CGN GMFG PRDM1 CCL28 CREB3L2 AFF3 PCDH18 KRT20 MYO1A RPL23 NAP1L5 Z93241.1 PTMA UBC TRBC1 TCEA3 IL1B RPL21
67 RPL27A ISG20 HSP90AA1 PERP PTPRC LYZ SEMA3C MDK RPLP1 ZBTB38 SERPINB5 PDK1 FAM49A DKK3 HPGD MISP RPS3A P2RX1 UBC ARHGDIB HIST2H2BE GBP5 IFI27 LIPA DDX5
68 RPL31 TPST2 BCL2L15 RPL32 THBD RNF128 EPCAM ZAP70 IER2 SOD3 UBC KYNU GJA1 TJP3 BTNL3 RPL23A LMO4 TMED9 RPS27A CPEB4 CARD16 EHF P2RY13 GIMAP7
69 RPS16 SPATS2 CXCL3 RPS14 LYN RASEF ELF3 LAT UBC EPCAM ST6GAL1 IL22RA2 FOXF1 KCNK1 TSPAN8 RASGRP2 SRGN IRF4 GZMH SELENOS FCMR TCIM PTGS2 SH3BGRL3
70 RPL35 SERP1 KLF5 SRSF3 CTSS NR2F1 CCL28 RARRES3 HLA-C PI3 ERLEC1 ZNF366 EHD2 LHFPL2 SLC4A4 RPS13 ALDH1A1 PTCH2 PIP4K2A SPCS1 RPS26 AC103702.2 HLA-DRB5 RPL27
71 HLA-E PDIA4 ARHGAP32 FYN MAFB PLPP2 EMP1 CORO1A AC104024.1 CTSE KRTCAP2 RASSF2 ANTXR1 BMP2 NXPE4 NR4A2 CD63 FNDC3A ITGA1 SEL1L RPS27 CRACR2B ADAMDEC1 CD6
72 UBA52 BTG2 ARHGEF10L RPLP2 MS4A6A FAM210B APOBR CKLF ARMCX3 CEACAM5 RALGPS2 HCK EDNRA TM4SF1 UGT2A3 RPS27A BTK CD27 TMIGD2 ERLEC1 AC058791.1 FOXA3 CLEC7A CD247
73 CD40LG SEC62 MUC12 TOMM7 SERPINA1 PRSS3 PDZD3 ACTB IGHV1-3 TMEM54 PPIB FGD2 TMEM47 SLC6A14 MT1E RPS23 VIM ARMCX3 ALOX5AP SLAMF7 RHOH KLF4 C5AR1 RPSA
74 JUND PPIB ATP10B SH3BGRL3 LILRA2 TSPAN12 KRT8 SPRY1 NUCB2 DUOXA2 SPAG4 FGL2 ADGRL3 PTPRH PAPSS2 RPL9 GRAP2 PPIB SRGN MANF CACYBP PRUNE2 MNDA STK17A
75 TSC22D3 TXNDC11 EPB41L1 HLA-E TLR2 NKD1 CDC42EP5 GPRIN3 RGS1 GALNT7 SRPRB C1orf162 LTBP2 MUC13 SLC22A18AS BTG1 LAPTM4A PDIA4 FYN HIST1H2BG ARHGDIB AGR3 HLA-DQA1 HLA-A
76 RPL10A HSPA13 BMP4 SRSF2 MEFV CENPV CA2 ABRACL MANF CLRN3 ISG20 LYN MXRA8 CYP3A5 PI3 LRRK2 TESPA1 HSPA5 HLA-A PDIA6 LIMS1 PTPRF EPB41L3 RPS3A
77 RPS24 RAB30 CXCL2 ARL4C PIK3AP1 GSTO2 PKIB IL4I1 DPP7 STAP2 EIF2AK3 GNB4 NKX2-3 SFN MEP1A FAU FTH1 KDELR1 FYB1 RABAC1 FURIN RAB26 TYROBP RPL19
78 CCL5 UBC DSP CLEC2D LILRB3 TNFRSF12A LCN2 COL5A3 RRBP1 NXPE4 LY96 CD83 COX7A1 TMC5 SMIM22 SMAP2 CD44 TRAM1 STK17A CYBA ICA1 HES6 SLC7A7 AC058791.1
79 PTMA TENT5C C2CD4B PRF1 TNFAIP2 SLC22A3 CASP5 MYL6 FNDC3A PBLD KLHL6 BCL2A1 RUNX1T1 TTC22 EPCAM RPS16 LAT2 KLF2 CRTAM HSPA5 RNF213 SMIM22 CCL3 GPR183
80 ID2 ITM2C TSPAN8 RGCC COTL1 PDZK1IP1 SMPDL3A MSN HDLBP FXYD3 ALG5 NAV1 SNAI2 FAXDC2 LGALS2 RPL13 BMP2K KCNQ1OT1 DUSP2 SEC61A1 ANKRD12 TSPAN1 HLA-DPB1 RPL11
81 CD48 CREB3L2 SLC25A25-AS1 RPL13A CXCL2 ARHGAP32 TSPAN8 CLEC2B PDIA4 MECOM SLAMF7 GRK3 ADGRL2 ASS1 FLNB RPL34 CLNK DNAJC1 SH3BGRL3 IGKV3-20 CCL20 CTBP2 LST1 LCP2
82 RPS4X C12orf45 ASCL2 RPL10A CREB5 ATP9A SMIM5 TMIGD2 TMEM59 GALNT5 SELENOS COTL1 MFAP4 DSG2 GUCA2A SP110 EGR1 TMEM107 RNF125 FNDC3A PHTF2 S100A14 GNB4 ITM2A
83 SARAF FNDC3A ENGASE GZMB HLA-DRA TMC5 ENTPD8 CD6 GOLGB1 EDN3 SEL1L3 RASSF4 SMARCA1 IFIT3 TRPM4 RPL30 ARHGAP18 HIST1H2BG BCL11B PTCH2 FAS NXPE4 EBI3 RPS13
84 HLA-A DNAJC1 S100P GPR65 ITGAX AC083809.1 SLC17A4 ABI3 ELL2 TMEM45B CLPTM1L LAMP3 LINC01082 SOWAHC ELMO3 RPS7 MYADM RPN2 SH2D2A PDK1 SATB1 SLC12A2 CD163L1 CD48
85 RPL35A OSTC REG3A HSPA8 KYNU PIWIL2 PTPRH G3BP2 CD27 ESRP1 HSPA5 MS4A6A CCL11 DDX60 CAPN5 CD79A MLPH FBXW7 SEPT7 SELENOM SAMSN1 CAPN5 IRF8 DNAJA1
86 RPS7 IGKV3-11 YAP1 PFN1 ITGB2 CNTNAP2 ARL14 MYL12A SRPRA ST6GALNAC1 TRAM1 PLEKHO1 BMP5 ADM B4GALNT3 RPL18 NFKBIZ SEC62 RPLP1 SPCS3 DDX5 MT1G PIK3AP1 SARAF
87 RPS25 RPN2 APCDD1 RPL19 NAMPT CCND1 PLS1 SLA CPEB4 ALDH1L1 ZNF791 SAMHD1 FOXF2 PLA2G2A SATB2 RPS6 TMEM154 SERP1 RORA CLPTM1L FRMD4B NUPR1 MAFB LAT
88 SRGN KDELR1 ENC1 PDCD4 ADGRE2 FDFT1 KRT19 TNFAIP3 KRTCAP2 EFNB2 DNAJC3 FNIP2 HTRA3 FHL2 CLDN3 RPL10A ADRB2 HSPA1B ARL4C IGLC3 CTSC FAM83E RNF130 CORO1A
89 GIMAP7 HIST1H2AE PRUNE2 KLRB1 CR1 IFITM3 HK2 CXCR4 TP53INP1 ABHD17C MAPKAPK2 BID ISLR TRANK1 KRT18 RPS12 IL18 HSPA1A LTB HSPA1B JAK1 GALNT12 SPI1 UBA52
90 SRSF3 HSPA5 TPM1 GIMAP7 SLC7A7 S100P ST14 OSTF1 IGKV3-20 GJB1 DDOST AC004817.3 FENDRR TNIP3 TRPM6 SLC2A3 IL18R1 TMEM258 RPS15A PDIA4 PHLDA1 GMDS HCK RAC2
91 PTPRC LMAN2 MUC13 IL7R CD302 AGMAT CLDN3 LCP1 IRF4 CDS1 HIST1H2BG RAB32 ABCA8 MDK HSD17B2 RPL29 RHOBTB3 EGR1 ATP1B3 SRM FYN TRPM4 TLR2 FYN
92 MALAT1 A1BG TRIM2 RPS20 STX11 NRXN3 LAMA3 CNOT6L IGLC3 PTPRF UAP1 SNN BICC1 MUC12 DSC2 RPL27A CD84 H1FX RPL28 FNDC3B WNK1 GNE TGFBI RPL23A
93 H3F3B ANKRD28 MT1G RPL27A IL1A KRTCAP3 LIPH PYHIN1 ERLEC1 NXPE1 FNDC3B CCDC88A TNS2 TMEM54 MUC13 EEF1B2 FOXP1 FOS GATA3 HIST1H1C TSPAN5 BCAS1 RNASE6 CLEC2B
94 SPOCK2 HSPA1A PPP1R16A DYNLL1 GLUL CFTR TFF1 BTG1 KLF2 SLC44A4 LMAN2 G0S2 MAP1B DST PLCD3 GRASP APOE IGLC3 SRSF2 NEAT1 RAC2 TSPAN8 SIGLEC1 RPS21
95 RPL36 SLC35B1 IER5L ITGA1 AC015912.3 PTK2 NOS2 GNA15 SEC24A CA2 FBXW7 MPEG1 GGT5 SLC40A1 ELF3 RPL12 ALOX5 CITED2 MYBL1 DNAJC3 CST7 QSOX1 PLAU MYL12B
96 RORA RABAC1 NUPR1 ZNF331 TMEM170B FAM213A PLA2G2A DNAJA1 TSC22D3 GALNT12 CD27 SERPINB9 C1R SECTM1 PCLO TMEM154 RPS6KA5 FAM30A RUNX3 POU2F2 ACTB DSP IL1RN RPL34
97 H2AFZ IGKV4-1 FUT6 RPL28 SNX10 SNX7 ACVRL1 SRGN FOSB RARRES1 RABAC1 FSCN1 SFRP1 SLC44A4 PPARG RPS14 MCTP2 SEC61G RPLP2 RGS1 PFN1 MBOAT2 FCGR1A PTMA
98 RPL24 HSPA1B C6orf222 SRSF7 PLBD1 HILPDA FUT3 RAC2 CDV3 B3GNT3 SUB1 DAPK1 CFH FABP1 CDKN2B RPS15A FER RASD1 CKLF EDEM1 CSF1 ATP8B1 CXCL8 RPS20
99 EEF1A1 SRM MT1E RPS23 TBXAS1 TRIM29 RHOC RHOH UFM1 GPT TMED10 LMO2 FKBP10 MUC4 ACVRL1 IDI1 PTMA IGHA2 RPL21 PTPN1 GMFG EPCAM LRRC25 RPS7
100 AC020571.1 FAM30A PRSS3 APOBEC3G LITAF ENC1 TCF7L2 GIMAP7 CRELD2 CDC42EP5 ICAM2 AC020656.1 NEXN SMPDL3A CDH17 UBA52 BACE2 IGKV4-1 HLA-E TMEM59 REL GPX2 SPRED1 RPL13A

separation of epithelial, stromal and immune cells

Cell split