knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p012n

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p012n"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p012n.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 7596 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 4566 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 26 27 28 3 4 5 6 7 8 9
1 TNFRSF17 TNFRSF17 MT1G ICOS GUCA2A CEACAM7 PPP1R1B CD160 MZB1 TMIGD1 HMGCS2 TAGLN CCL5 LYZ COL1A2 ADAMDEC1 TPSAB1 TMIGD1 AICDA SFRP2 CLDN5 MZB1 CD2 MS4A1 IL7R MZB1 MS4A1 ZG16 MZB1
2 MZB1 MZB1 KRT8 FYB1 AQP8 GUCA2A LEFTY1 KLRD1 TNFRSF17 SLC51B UGT2B17 ACTA2 CD2 CXCL8 C1S CXCL14 CPA3 PI3 MND1 SFRP1 EGFL7 B4GALT3 CD3D IGHD FYB1 IGHA1 BANK1 MUC2 DERL3
3 SEC11C DERL3 KRT18 CD3D CEACAM7 AQP8 IGFBP2 NKG7 UBE2J1 CA4 MUC4 MYH11 CD3D C1QA COL3A1 CCL13 KIT CDA MME EFEMP1 CAVIN2 SDF2L1 CCL5 VPREB3 CD3D IGKJ5 HLA-DRA CLCA1 FKBP11
4 IGHA1 SEC11C LGALS4 IL7R SLC26A3 SLC26A3 AGR2 GZMB JCHAIN AQP8 PIGR TPM2 IL7R C1QB CXCL14 LUM MS4A2 PRAP1 RMI2 DPT VWF TNFRSF17 CD3E IGHM BCL11B TNFRSF17 HLA-DPB1 ITLN1 PRDX4
5 JCHAIN FKBP11 PIGR CD3E MS4A12 CLCA4 EPHB2 GZMA SEC11C HSD17B2 ELF3 C11orf96 CD3E IL1B COL1A1 CCL8 HPGDS SLC51B TCL1A GPNMB PLVAP FKBP11 IL7R BANK1 TRAC IGHA2 VPREB3 REP15 TNFRSF17
6 PRDX4 PRDX4 ELF3 ARL4C CA4 GUCA2B SPINK1 HOPX XBP1 MS4A12 KLF5 MYL9 GZMA C1QC LUM C1S CTSG TRPM6 SHCBP1 FBLN2 FLT1 ST6GALNAC4 CD3G HLA-DRA RPS27 DERL3 HLA-DPA1 KLK1 SEC11C
7 SSR4 JCHAIN HMGCS2 PASK GUCA2B CEACAM1 GPX2 TMIGD2 DERL3 GUCA2B SOX4 IGFBP5 GZMK AIF1 C1R CFH GATA2 HSD17B2 CENPU OGN CLEC14A TRAC TRAC TCL1A ICOS JUN HLA-DRB5 SPDEF CCR10
8 DERL3 IGKC SELENBP1 BCL11B CEACAM1 MUC12 MYB TRDC IGKJ5 CDKN2B-AS1 PCK1 SPARCL1 TRAC STAB1 FBLN1 DCN RHEX DEFB1 PAX5 KRT24 SOX18 IGKC HCST HLA-DPB1 CD3E JCHAIN CD83 TFF3 SDF2L1
9 FKBP11 IGHA2 FABP1 TRAC MUC12 MS4A12 SNORC XCL2 SSR4 CLCA4 GDF15 RERGL HCST MRC1 DCN ABCA8 SLC18A2 CA4 KIF11 MFAP5 ADGRF5 IGHA1 TNFAIP3 CD83 CXCR4 TENT5C TNFRSF13C BEST2 SSR3
10 UBE2J1 SSR4 UGT2B17 CD28 PRSS3 KRT20 ADH1C CCL5 PABPC4 GUCA2A PLN TNFAIP3 CPVL EMILIN1 HAPLN1 HDC PDE9A CD22 C3 CDH5 PRDM1 ANXA1 HLA-DRB5 PASK HSPA1B CD74 MUC4 MANF
11 XBP1 XBP1 KRT19 CD3G KRT20 CDHR5 TRABD2A PRF1 PIM2 CEACAM7 CAV1 NKG7 MPEG1 COL6A3 RBP1 GCSAML C11orf86 CDT1 CD248 PODXL CCR10 KLRB1 HLA-DPA1 TRBC2 SSR4 CXCR4 MLPH SSR4
12 IGKC IGHA1 DSP GPR183 CLCA4 FABP1 MECOM CST7 SEL1L SLC26A3 MCAM S100A4 MS4A6A COL6A2 FBLN1 KRT1 MEP1A MS4A1 PI16 KDR JCHAIN S100A4 TNFRSF13C GPR183 XBP1 CD37 FCGBP UBE2J1
13 SEC61B SSR3 PHGR1 KLRB1 MISP TSPAN1 CFTR CD7 DUSP5 CEACAM1 CSRP2 KLRB1 C5AR1 ADAMDEC1 ADH1B CLU CDKN2B-AS1 UHRF1 CILP STC1 PRDX4 HOPX PAX5 ARL4C PDK1 LINC01781 TPSG1 FKBP2
14 GNG7 EAF2 CDHR5 CD2 TSPAN1 SLC9A3 AGR3 KIR2DL4 SEC61B SLC9A3 SLC7A2 TRBC1 MNDA NNMT EMILIN1 LTC4S MS4A12 TK1 PRELP MMRN2 SSR4 TMSB4X HLA-DQB1 RPL32 FKBP11 HLA-DQB1 WFDC2 HSP90B1
15 ANKRD28 IGKJ5 PCK1 TRBC2 SDCBP2 TMEM54 ESRP1 XCL1 TENT5C PRSS3 RCAN2 CD3G F13A1 APOE VCAN RGS13 HPGD CD19 WISP2 EMCN PDIA4 TRBC1 CD72 TRBC1 IRF4 LAPTM5 SERPINA1 SPCS3
16 SPCS2 PDIA6 CLDN4 PTPRC AOC1 FXYD3 HMGCS2 CD8A HSP90B1 ANPEP SNCG GZMM CLEC10A SPARC CP KIAA1549 LYPD8 GINS2 COL12A1 CYYR1 AC104699.1 GZMM CD37 RPL30 IGKC MARCH1 TBX10 IGHA2
17 EAF2 HERPUD1 CKB GIMAP7 SLC9A3 PHGR1 DDAH1 FASLG SSR3 TRIM31 LMOD1 SRGN CSF1R ABCA8 CYGB FCER1A PPP1R14D KIF2C F10 TEK DERL3 GZMA GPR18 SRGN HSP90B1 BLK ANO7 SPCS2
18 POU2AF1 HSP90B1 CD24 TRBC1 TRIM31 GPA33 UGT2A3 TRGC2 TXNDC11 SDCBP2 NOTCH3 LTB LST1 IGFBP7 STMN2 SLC45A3 CLDN7 FAM111B CADM3 INHBB SSR3 FYB1 CD22 CD3G FKBP2 CD79A HEPACAM2 CRELD2
19 SSR3 CCR10 MT1E CXCR4 SMIM22 SMIM22 FERMT1 CCL4 PRDM1 MUC12 TNS1 ANXA1 CLEC7A CFH SCARA5 VWA5A LINC01133 MYBL2 OMD KANK3 IGHA2 TRBC2 CD74 RPS12 HERPUD1 GPR183 WNK4 AC104699.1
20 HSP90B1 SPCS1 CA2 SRGN FABP1 IFI27 PKP2 CD247 FKBP11 PI3 FRZB CST7 MS4A4A MXRA5 VCAM1 MAOB TRIM31 HJURP SEMA3E RASIP1 CD2 NKG7 CXCR4 CD2 BTG2 LTB ST6GALNAC1 SPCS1
21 RAB30 SDF2L1 SOX4 CLEC2D CDHR5 PLAC8 SLC9A2 IL2RB POU2AF1 SFN SYNPO2 TRBC2 AC020656.1 COL5A1 TFPI CAVIN2 HRCT1 TOP2A GAS1 TM4SF18 SEC11C CST7 RUBCNL RPS29 HSPA1A CXCR5 SYTL2 SLAMF7
22 HERPUD1 UBE2J1 S100A14 RPS27 TMEM54 CLDN4 KLF5 HCST HERPUD1 TRPM6 NEXN CD69 IGSF6 MMP2 COL5A2 RAB27B AQP8 GCSAM RSPO3 RBP7 CLPTM1L CD7 AFF3 RPL21 SEC11C FCMR S100P JCHAIN
23 DUSP5 SPCS2 TSPAN8 CTLA4 CA2 KRT8 NXPE1 SYTL3 IGKC DEFB1 CAV2 TMSB4X MS4A7 LAMA4 COL15A1 TYROBP PKIB CLSPN HTRA3 SOX17 XBP1 CD52 HLA-DRB1 RPS3A SDF2L1 PAX5 GALNT5 XBP1
24 SPCS1 CYBA CLDN3 RPS29 C10orf99 PIGR SOX9 MATK RAB30 MISP BCAM DUSP2 FPR3 ADH1B WNT2B ANXA1 GUCA2B E2F1 PODN ROBO4 FKBP2 ARL4C CD79A RPS15A RRBP1 REL FAM3D PDIA4
25 FKBP2 SLAMF7 EPCAM BTG1 FXYD3 CA4 SLC12A2 CTSW SDF2L1 PKIB BGN PTPRC IL1RN LTBP4 CHL1 STXBP6 HHLA2 ASF1B CYP4B1 FAM110D SPCS1 PTPRC LAPTM5 BTG1 CYBA BTG1 B3GNT6 IGHA1
26 SDF2L1 SEC61B FXYD3 CNOT6L IFI27 CD177 ITGA2 LINC01871 IGHA1 KRT20 MAP1B DNAJA1 CD163 SERPING1 NEGR1 ALOX5AP BMP3 HLA-DMB THBS2 GALNT18 AGA LCK CD52 RPL19 PABPC4 SMAP2 ATOH1 PDIA6
27 PRDM1 FKBP2 CHP2 ZNF331 KRT8 SDCBP2 TOX3 KRT81 SERP1 PRAP1 CRIP2 CD52 VSIG4 PMP22 DKK3 PTGS2 PTPRH TMEM131L ADAMTSL4 PALMD RPL8 RGL4 FCER2 RPS13 PDIA4 HLA-DRB1 ERN2 HERPUD1
28 PDIA6 SPAG4 SLC26A2 ARHGDIB SFN KRT19 SLC44A3 IFNG IRF4 TSPAN1 CPE REL CD93 CYGB MMP2 PTGS1 TMEM37 BIRC5 SHISA3 APLNR CD3D SRGN HLA-DQA1 SARAF IER2 CD52 ELF3 CYBA
29 IGKJ5 MANF GPX2 SPOCK2 TSPAN8 CA2 OLFM4 GZMM SPCS1 SULT1A2 WTIP FYN NCF2 CTSK THY1 MITF CEACAM7 TUBB2B LRRN4CL EXOC3L2 IFNAR2 BCL11B BLK RPL9 PRDX4 CD22 TFF1 SEC61B
30 CYBA GNG7 AOC1 RPL30 KRT19 MISP MUC4 CD3E TRAM1 CDA CRYAB MYL12A CD209 COL6A1 MFAP4 GLUL CYP3A5 MKI67 PAMR1 PCAT19 RPS4X LCP1 FCRL1 CCR7 SLAMF7 HLA-DQA1 SPINK1 CLPTM1L
31 SPAG4 SPCS3 CA7 CCR7 CLDN3 CLDN3 RNF186 LCP2 FBXW7 PPP1R14D C1QTNF1 CD7 LILRB5 CCDC80 COL5A1 S100A4 CEACAM1 IRF8 PCOLCE2 ADGRL4 CYBA MYL12A HLA-DMB RPS27A EGR1 RPS27 RAP1GAP EAF2
32 TPST2 CRELD2 LGALS3 RPL37 PHGR1 MUC13 FAM171A1 ITGA1 PDIA6 HPGD ATP1A2 JUNB P2RY13 FSTL1 PAPPA LMO4 C19orf33 HLA-DRB1 CHRDL1 SHANK3 TXNDC15 SH3BGRL3 CD79B SPOCK2 DUSP5 RPS23 SCNN1A MEI1
33 SLAMF7 TXNDC15 BEST4 LCK HSD17B2 SELENOP SYT13 TRBC1 SPCS2 TMEM45B CNN1 CXCR4 LILRB2 IFITM3 NR2F1 HS3ST1 SDCBP2 GTSE1 LRRC17 DOC2B IFNG CD8A BTG1 CTLA4 CREB3L2 SWAP70 CREB3L1 DDOST
34 AC104699.1 SDC1 CDH17 RPL32 CLDN4 AOC1 KRTCAP3 KLRB1 SLAMF7 SMIM22 C2orf40 LCP1 SIGLEC1 ISLR EMID1 BACE2 B3GNT3 CR2 OLFML1 MYCT1 RPL7A LTB SWAP70 RPLP2 FOS IRF8 TPM1 TMEM258
35 SPCS3 TPST2 C10orf99 RPS12 PLAC8 PRSS3 FOXA1 CD96 FKBP2 MEP1A SYNM CALM1 CD36 NEGR1 ADGRL3 CSF1 SLC26A3 BCL7A VEGFD NOVA2 PDK1 LINC01871 POU2F2 RPS3 PIM2 POU2F2 CLDN4 KRTCAP2
36 TENT5C DUSP5 KLF5 CREM EPCAM SERINC2 EHF SH2D2A CLPTM1L TMEM37 LDB3 ACTB CSTA CALD1 GGT5 VIM GUCA2A VPREB3 FLRT2 ENPP2 UBE2J1 GPR65 FCMR RPS26 TMEM107 NR4A2 KRT18 TXNDC15
37 IGHA2 PRDM1 CA1 CD7 GPA33 FAM3D PLCB4 LCP1 IGHG4 CDHR5 ACTG2 SH3BGRL3 PLA2G7 SPARCL1 LINC01082 EGR1 SLC17A4 GPR18 COL8A1 FAM167B MANEA PFN1 MARCH1 JUNB MANF RPS11 VSIG2 PDK1
38 ALG5 FTL TMEM54 RGCC TMIGD1 GPRC5A CDX1 GPR65 EAF2 AOC1 EFHD1 ID2 TYROBP FN1 CLMP FTH1 PRR15 SUGCT MEDAG ERG SPCS3 CD69 IRF8 RPL38 UBE2J1 LY9 NEDD4L MANEA
39 ADA2 FCRL5 KRT20 LTB HPGD KRT18 KIAA1324 PTPN22 ANKRD28 IFI27 PLS3 RGCC TGFBI CYR61 SFTA1P ARHGAP18 LINC00483 ESCO2 PTGIS SOX7 CHST12 LAT SMAP2 RPS21 SEC61B GRASP TCIM LMAN2
40 MANF ANKRD28 CES3 RPS15A TRPM6 ELF3 MAOA TYROBP CD79A SLC17A4 NRGN BTG1 FGL2 A2M COL6A5 SRGN TMEM45B NDC80 NLGN1 ZNF385D RPL10 CD40LG REL RPL34 IGLL5 RPL11 LGALS4 NUCB2
41 PDK1 AMPD1 CDC42EP5 RPS3 SERINC2 EPCAM GATA6 TMSB4X EIF2AK4 SERINC2 CCDC3 GMFG OLR1 COL5A2 CDH11 ACSL4 CLCA4 UBE2T SGCG TIE1 SEC24A DNAJA1 LYN RPL11 HIST1H2BG CCR7 BCAS1 CD79A
42 SPATS2 UBC GOLM1 SLC2A3 SLC51B TSPAN8 WFDC2 TNFAIP3 HLA-C GPA33 GUCY1A1 HLA-E CMKLR1 PDGFRA FOXF2 LAPTM4A C1QTNF12 NCAPG AADACL2 CXorf36 GBP5 ACTB SLC2A3 PTPRC SSR3 RPLP2 CDC42EP5 SPAG4
43 UBC ALG5 SOX9 RPS3A PIGR PKIB DSG2 GZMH ISG20 DHRS11 KCNAB1 CCL4 CFP STMN2 TMEM150C CD9 XDH AURKB AOX1 JAM2 MANF ARHGDIB CXCR5 CD28 SDC1 RPL13A ENTPD8 RPN2
44 PPIB DDOST FLNB TPT1 LGALS4 SLC17A4 GDF15 CRTAM PDIA4 TMEM54 ITGA7 PFN1 DNASE1L3 RBP1 SAMD11 NFKBIZ SFN PXK OSR2 AVPR2 SUB1 RPS29 GRASP MALAT1 DUSP1 RPS13 GSN PPIB
45 NUCB2 NUCB2 CDX1 SARAF MUC13 TRIM31 ATP8B1 FYN SEL1L3 EMP1 SUSD5 RPL28 ADAP2 COL4A2 EPHA7 FOSB EMP1 E2F8 IL33 BAALC SEC61B RORA LTB RPL37 IGLC2 RPS20 IFI27 UBC
46 ERLEC1 PPIB DSC2 RPS27A ANPEP LGALS4 MYO10 GNLY MANEA FXYD3 EDNRA RPS27 CD68 BMP4 IL34 SAMSN1 TMEM82 BRCA1 PCOLCE CCM2L EDEM2 GZMK CD19 RPL28 SPCS1 RPL21 PHGR1 FTL
47 DDOST PIM2 PLCE1 RPL21 DHRS11 CKB ARSE PIK3R1 ERLEC1 FABP1 AOC3 CD48 C3AR1 AEBP1 CCL11 HPGD CEACAM6 CDKN3 C16orf89 LINC02452 GNG7 CXCR4 CR2 RPS6 HSPA5 RPS21 PIGR LMAN1
48 CCR10 LY96 S100A6 RPL28 KRT18 PI3 NXPE4 PDE4A MANF PLAC8 FRY FYB1 TLR2 EMID1 CCL2 CD84 SLC9A3 UBE2C SCARA5 CD36 RPL3 TRGC2 RPL18A TPT1 KCNQ1OT1 RPL32 AGR2 IGKC
49 MANEA MANEA MIR194-2HG TIGIT CGN RETSAT UGT2B17 TNFSF14 EVI2B C11orf86 DES DDX5 RGS18 NR2F1 FBN1 AC020571.1 DHRS9 CD79B ADAMTS16 THSD7A TPST2 RPS19 RPS27 RPL13 CITED2 KLF2 FOXA3 CD27
50 SUB1 IFNAR2 BSG LAT PKIB HPGD ST6GALNAC1 PTPRC GMPPB CA2 RBPMS2 HLA-A SLC8A1 PLP1 COL3A1 CD69 MAL2 RGS13 PRRX1 NRN1 IRF4 DUSP2 RPS11 RGCC RPN1 RPSA KRT8 CHID1
51 CRELD2 HSPA13 HES1 RPL19 FAM3D ANPEP OVOL1 ABI3 PRDX4 MUC13 NFASC RPS29 SPI1 CCL13 MATN2 ATP6V0A2 RIMKLA SWAP70 FBN1 TPO PIM2 RUNX3 FCRLA ZNF331 PRDM1 RPL30 CLDN3 DUSP5
52 SDC1 PAIP2B AC103702.2 UBA52 CES2 TMIGD1 TCEA3 CLEC2B SPCS3 KRT19 GUCY1B1 CREM HCK SCARA5 PCDH7 BMP2K SULT1A2 VNN2 MYOC NOS3 SPOCK2 RPS27 LY86 RPL36 AC104024.1 RPL27A TSPAN1 ERLEC1
53 CD27 SPATS2 TST TMSB4X TMEM45B COL17A1 URAD RGL4 TMEM258 TSPAN8 GJA4 RUNX3 RAB31 CCL8 NID1 SDCBP CD177 PBK ADAMTS5 HYAL2 ZDBF2 REL RPL13A KLRB1 Z93241.1 CD79B SLC44A4 OSTC
54 CLPTM1L PDK1 GPA33 RPS6 PRSS8 PRSS8 SMAGP LCK SRPRA CA1 MYOCD ARL4C CD14 C11orf96 VAT1L IL18R1 HRASLS2 AL139020.1 ADH1B LIMCH1 TENT5C CD247 CHI3L2 RPL35A SEL1L RPL19 RASEF DNAJC3
55 DNAJC3 TNFRSF18 SH2D6 RPL11 ST14 SFN MT1G TXK NUCB2 HRCT1 DACT3 RORA JAML RARRES2 BMP4 GPR65 ARL14 HLA-DRB5 SHISA6 LDB2 RPL22L1 SKAP1 SELL RPS20 MANEA RPS29 FXYD3 ALG5
56 TXNDC11 AC104699.1 MISP TRAT1 CD177 CA1 TRIM2 CORO1A CANX MYH14 CASQ2 RPL38 CCL3L1 MATN2 MXRA5 PPP1R15A PRSS3 BACH2 FST PCDH12 KPNA2 RPL28 RPL11 PIK3IP1 H2AFX RPL27 HSD11B2 HSPA13
57 TRIB1 HSPA5 SMIM22 FKBP5 CDKN2B-AS1 MYH14 CERS6 PFN1 GNG7 CLDN3 CAP2 ARHGDIB SDS CP PLEKHH2 MLPH ANPEP LMO2 ANGPTL2 RAMP2 FYB1 TPT1 RPS23 GIMAP7 FOSB RPL23A KLF4 CSF2RB
58 ISG20 SUB1 HSD11B2 CD48 MYH14 LGALS3 DSP EVL P4HB HHLA2 NRIP2 IFNG GPR34 CDH19 LAMA4 RPL23 PRSS8 HLA-DRA TNXB CALCRL HSP90B1 ZNF331 LY9 UBA52 EAF2 RPL37 SPINK4 SELENOS
59 TMEM59 TMEM59 CES2 JUNB RHOC S100A6 MEST CD2 DNAJC1 BTNL3 NTRK3 SLA RNASE6 PLAT NOVA1 EGR3 MUC12 NUSAP1 SRPX PTPRB IL7R CREM RHOH RPL31 NFKBIA LYN PTPRF PRDM1
60 CREB3L2 SEL1L ATP1B1 TBC1D4 TST CAMK2N1 SNHG18 DOK2 CRELD2 AMN FHL5 HSPA8 MSR1 ADAMTS1 BMP5 ALOX5 MISP SPIB CCDC80 GPR146 NKG7 RPS27A RPL23 RPL13A GADD45B RPL31 MCF2L SEL1L
61 PDIA4 TENT5C NXPE4 RPL31 MEP1A TMPRSS2 NEO1 ACTB CD27 CASP5 CSPG4 MALAT1 PTGS2 NRXN1 NNMT PTMA LGALS2 FANCI SLIT3 PCDH17 ALG5 RGCC RPL19 RPS28 POU2AF1 RPS12 FRYL HSPA5
62 FCRL5 TRAM1 CAMK2N1 RPL34 PCK1 RHOC EPCAM GATA3 IGLC3 TST COX4I2 RARRES3 SLAMF8 SERPINF1 IL1R1 KDM6B PLS1 HLA-DPB1 FBLN5 AFAP1L1 SDC1 RPS12 RPS20 ARHGDIB TRIB1 SP110 MUC13 TMED10
63 SEL1L CREB3L2 SFN RPL13A SLC17A4 PDE9A TSPAN8 APOBEC3G SUB1 C10orf99 SORBS2 SARAF CCR1 NOVA1 PCDH18 RNF130 ASS1 ORC6 ECM1 ARHGAP29 HLA-C SAMSN1 CYBB SLC2A3 KLF2 RPL9 RNASE1 SIL1
64 SELENOS IGLV3-1 MT1H RPL9 CAMK2N1 CES2 MGST2 REL TP53INP1 CYP3A5 HSPB6 TOMM7 S100A9 PTGDS CCDC102B CAPG DHRS11 FCRLA LOX PREX2 RPLP1 RARRES3 RPL23A RPS14 H1FX RPS8 SMIM22 TENT5C
65 TXNDC15 MEI1 AC023157.3 PTGER4 PRAP1 CGN CREB3L1 ALOX5AP SEC61A1 C1QTNF12 PPP1R14A RPS12 CLEC9A PAPPA EDIL3 NFKBIA CLRN3 LRMP ABI3BP CX3CL1 SERP1 CD6 RPL37 LDHB SERP1 EZR KIAA1324 TRAM1
66 MEI1 PDIA4 EPS8L3 RPS13 SULT1A2 BSG TSPAN6 TRBC2 CDV3 EPCAM RASL12 GPR65 FPR1 PXDN ITIH5 MYADM KRT20 RFTN1 FGF7 SPNS2 EAF2 EVL RPL32 RPS8 GNG7 RPL38 FAM83E ICAM2
67 TMEM258 CLPTM1L OTOP2 ANKRD12 ELF3 MVP HOXA11-AS CD3G PPIB SELENOP HSPB7 NR4A2 CYBB COLEC12 APOE SGK1 CLDN23 LY86 TGFBR3 TMEM255B RPS18 LCP2 RPS8 TOMM7 SELENOS BASP1 H1F0 TXNDC11
68 TRAM1 CSF2RB KLF4 RPS20 PPP1R14D HHLA2 CASP6 CD69 CYBA ASS1 CDH6 SPINK2 ITGAM DKK3 COL1A2 DUSP6 SECTM1 NUF2 FBLN1 HSPA12B RPS27A CLEC2D RPSA RPS23 FBXW7 RPL10A DISP2 SERP1
69 HSPA5 TXNDC11 ATP8B1 RPS21 SLC6A8 TRPM6 RAB25 NR4A2 UFM1 C19orf33 CALD1 XCL1 EMILIN2 LAMA2 LAMB1 CTNNBL1 C15orf48 CD72 MMP2 ZNF366 RAB30 HLA-A RALGPS2 FYN CD27 RPS27A KRT20 POU2AF1
70 FTL POU2AF1 CDX2 YPEL5 PI3 TST AC103702.2 SEPT7 ZBTB38 ENTPD8 ANGPT1 TNF CLEC4E COL14A1 CXCL1 NR4A3 TTC22 CCNA2 PDGFRA TAL1 ANKRD28 HSPA8 RASGRP2 CREM AL360012.1 RPL18A QSOX1 SRM
71 PABPC4 LMAN2 SLC4A4 RPLP1 SELENOP LMO7 CDS1 COTL1 LMAN2 MAL2 KANK2 RPS19 CD163L1 FBLN2 SVEP1 CD63 C1orf210 TYMS GREM2 GNG11 FBXW7 CD48 RBM38 RPL24 TMEM258 UBA52 MGLL SUB1
72 RPN2 CHPF TPRN RPS28 CYP3A5 MAL2 ZNF703 TRAC IGLC2 GGT6 KCNA5 RPL30 TTYH3 CCL2 FSTL1 AC020916.1 ITPKA RBM38 DCN CD93 CCDC167 RPLP1 RPS13 CD7 ANKRD37 ZFAS1 CKB LY96
73 CD38 RAB30 CA12 RPLP2 LGALS3 DHRS9 CD24 PIP4K2A IGHG3 PRSS8 SOD3 PIP4K2A FCER1A POSTN PTN UBB SERINC2 CHEK1 LVRN CLEC1A DCPS CORO1A SMIM14 LTB UBC RASGEF1B CD177 CREB3L2
74 LMAN2 ERLEC1 PRSS3 GIMAP4 CA1 SLC6A8 AC005833.1 MAP3K8 GLA C2orf88 CAVIN3 RPS15A HLA-DMB SCN7A ALDH1A3 PEBP1 TJP3 HLA-DPA1 GPX8 ATOH8 CRELD2 RASGRP1 RPL21 RPL27 SPCS3 RPS3A SHROOM3 SLC35B1
75 PIM2 TMEM208 ST14 RPL13 CDA CDKN2B-AS1 MT1E ARHGAP9 SELENOS KRT8 CACNA1H STK17B HAVCR2 GGT5 EFEMP1 CLIC1 BTNL3 BCAS4 LHFPL6 CRIP2 RNASEH2B RPL27 BACH2 RPS16 SEC61G IGHD HMGCS2 TMEM208
76 B4GALT3 DNAJC3 SLC44A4 RPL27 GIPC1 SLC4A4 EPHB3 KLRF1 SEC61G GPRC5A CAVIN1 UBE2S RASSF4 FXYD1 COL14A1 MAPK6 FABP2 TPX2 SERPINF1 PTPRM SLAMF7 RPL30 RPS2 RPL23A KRTCAP2 RPL8 CAMK2N1 GNG7
77 KRTCAP2 TMEM258 VSIG2 RPS26 CEACAM6 S100A10 CMTM4 GPR171 HDLBP FAM3D KCNMB1 ZNF331 SLCO2B1 ITIH5 COL1A1 ARL5B TST CDCA7 ISLR FGD5 TMEM134 RPS15A RPL12 CLEC2D SPCS2 RHOH S100A6 SEC61G
78 SERP1 CTHRC1 PHLDA2 CD52 SLC44A4 TCF7L2 IMPA2 CKLF IGHA2 DHRS9 MFGE8 EIF1 TNFAIP2 MXRA8 PROS1 IER2 CA2 RAD51AP1 ADGRD1 HYAL1 RPS14 ALOX5AP ZNF331 RPSA PDIA6 RPL23 AGR3 SDC1
79 HSPA13 TIMP1 APOBR TOMM7 DSC2 SECTM1 GOLM1 ID2 OSTC CGN CARMN RPS27A P2RY6 VCAN C1R FOXP1 TSPAN1 CD1C AL078639.1 PDE2A RPL35A DDX5 RPS21 RPS4Y1 PPP1R10 RGS2 EHF SRPRB
80 LMAN1 SIL1 LIMA1 SMAP2 TMEM37 SLC51B S100A16 SKAP1 TMED9 SMPDL3A RERG SRSF2 CD86 COL16A1 MXRA8 SERPINB1 AOC1 CENPF COL6A3 ALPL RPS19 CLEC2B RPL28 RPL5 TUBB4B RPL28 ARL14 CXorf21
81 IRF4 DNAJC1 MYH14 APBB1IP C1QTNF12 C10orf99 SH3RF2 CD52 MTDH C1orf115 TIMP3 RPL27 NLRP3 EDIL3 PTGDS NR4A2 SMIM22 DHFR IGSF10 THBD RPS2 IL2RB RPL31 RPL7 TXNDC11 PFDN5 TM4SF5 LGALS1
82 MIR29B2CHG KRTCAP2 LGALS3BP MALAT1 DEFB1 HSD17B2 CDX2 MYL12A LMAN1 PLS1 MGP RAC2 FCGR3A CDH11 PTGFR PRDX1 C10orf99 HLA-DQA1 FSTL1 RBP5 PDIA6 ARPC2 RPL13 CD48 HIST1H2AC AC004687.1 RASSF7 TPST2
83 CD79A LMAN1 TMEM238 MAF LINC00483 CCDC68 ATP2C2 RNF125 HSPA5 CD177 MAP3K7CL RPS21 LILRB4 PCOLCE SNAI2 DDX3Y SLC6A8 HLA-DMA RGS22 SEMA3F IGKJ5 RPS3 RPS3A PFDN5 IGLC3 MEF2C CEACAM6 TMEM59
84 SMARCB1 TRIB1 SPIB RPS14 ENTPD8 CYP3A5 GSTO2 SRGN RPL36AL PRR15 TBX2 PTPN22 GFRA2 SPP1 PMP22 RPL36AL ANXA4 WDR76 LMO3 ARAP3 HERPUD1 PTGER4 CD69 TBC1D4 H3F3B RPS6 EPCAM HDLBP
85 IGKV3-20 IGKV3-20 CISD3 HCST LINC02023 HK2 GIPC2 FYB1 RPLP0 RHOC RYR2 PNRC1 SIRPA NID1 SCT H3F3B USH1C BASP1 LUM ADCY4 FAM214A JUNB RPLP2 EEF1B2 HSP90AA1 RPS2 URAD IKBIP
86 LY96 TMED10 MT2A FYN SPINT1 SLC44A4 S100A14 DOCK10 TMED10 PHGR1 LTBP1 HLA-F CD300E TFPI PDGFRA ATP5MC2 SMPDL3A ASPM ADAMTSL3 ITGA5 GLIPR1 ICOS RPL27A RPL23 FAM30A CYTIP PLA2G10 PHGDH
87 FNDC3A SERP1 DSG2 RPSA ETHE1 HES1 C10orf99 ARHGDIB RPL8 SPINT1 RNF150 TPT1 ITGAX LAMB1 SERPINF1 RPS6KA5 TMEM54 ZWINT HTRA1 ENG TRIB1 RPS21 CCR7 FKBP5 SUB1 RPL13 TMEM54 CNPY2
88 FBXW7 CD27 MVP RPL35A AMN UACA LGALS4 GZMK SSR2 CLDN23 PDLIM3 ABRACL AOAH PTCH1 SFRP1 IL18 GGT6 BLK MRC2 TM4SF1 PPIB IFNG HLA-DMA YPEL5 ZFP36 RPL34 CDHR5 RABAC1
89 TP53INP1 RPN2 S100A10 RPL27A LAMB3 ATP1B1 TOM1L1 SSBP4 IGHG1 TMPRSS2 PALLD SRSF7 AXL PTN PCOLCE LDHB LAMB3 KIFC1 IGFBP6 BTNL9 LGALS1 SLFN5 YPEL5 RPS10 MCL1 RPL12 CA12 HLA-C
90 ARMCX3 SELENOS LLGL2 ITM2A CKB FCGRT MAP7 CREM DDOST CES2 FILIP1 MYADM PTAFR LRP1 PITX1 SLC2A3 GPA33 CHAF1A AHNAK2 LIFR FTL ATP5F1E NR4A2 RPS15 GLA RILPL2 LIPH DNAJC1
91 SRPRA CD79A CEACAM7 RPL23 PLS1 SLC26A2 TFCP2L1 CD3D RGS1 GIPC1 A2M FOSB TBXAS1 SLITRK6 BICC1 CD44 CDHR5 SCIMP GRIK1 F2RL3 SPAG4 SARAF RPL27 RPL27A AC020916.1 EEF1B2 CAPN5 SLC1A4
92 SEL1L3 ICAM2 GUCA2A LDHB TJP3 ST14 EMP2 PREX1 RPL10 LAMB3 IGFBP7 ATP5F1E TFEC COL4A1 FN1 NR4A1 AKR1B10 LAPTM5 TFPI IL3RA Z93241.1 ABRACL CYTIP ZFP36L2 NEU1 RPS14 ID1 CHPF
93 REEP5 REEP5 GOLIM4 RPS7 GPRC5A SELENBP1 SIAE RAB8B RBBP8 CAMK2N1 ADAMTS8 DNAJB1 CD4 MRC2 MAMDC2 LYST GPRC5A ZNF367 THY1 GJA1 IGHV4-39 PTPN22 RPL29 PTMA TSC22D3 RPS16 SERINC2 LINC02362
94 TIMP1 ISG20 RND3 RPS16 LINC01133 PLS1 RARRES1 STK17B CALR CEACAM6 RBPMS H2AFZ ADGRE2 PLAC9 FABP4 SELENOK DOK4 CDCA7L FGF13 LMO2 RPL24 RPL23A RPL30 ANKRD12 CDK2AP2 SNX2 DDR1 ICAM3
95 OSTC C12orf45 SLC26A3 RPL38 ASS1 CDH1 IDH1 OSTF1 SEC62 DSC2 MYLK YME1L1 CXCL2 COL15A1 PLAC9 ABCA1 MUC13 MAP4K4 SDC2 EVA1C SEL1L3 GMFG RPS5 CCND3 RGS1 RPS5 TSPAN8 RPN1
96 SEC62 HLA-C UQCRC1 RPS15 TCF7L2 PCK1 VIL1 ZNF331 H1FX LYPD8 PRDM16 SAP18 FOLR2 IL1R1 COL6A2 RPS4Y1 TMC4 BCL6 CTSK S1PR1 NMRK1 RAC2 RPL10A CEMIP2 RASD1 HLA-E TMC5 ISG20
97 TMED9 PABPC4 IER3 CD247 S100A6 SPINT1 SATB2 RARRES3 RRBP1 CLDN4 NCS1 FXYD5 C1orf162 AKAP12 P2RY14 PLIN2 CGN CCNB1 ASPN FAM107A GZMK LAPTM5 BASP1 RPS2 DNAJB1 YPEL5 CRACR2B SEL1L3
98 DNAJC1 TMEM107 CHCHD10 RPL7 SLC26A2 EMP1 GMDS RAC2 GNAS SECTM1 PLAC9 TSC22D3 CCL3 ID4 TCF21 DDX5 CLCN2 CYBB SPON2 HEG1 RPLP0 GBP5 GPR183 RPS25 NR4A1 RALGPS2 GPA33 CD38
99 ELL2 MIR29B2CHG NDUFB7 RPS2 LMO7 MEP1A ERN2 ARPC2 ARF4 PDE9A TMEM47 KDM6B CCL4L2 MAFB FOXF1 PRDX6 C2orf88 CDK1 MGP CAV2 RPS15A RPSA RPS29 ETS1 BRD2 RPL35A TCEA3 PIM2
100 TMEM107 FNDC3A ID1 GZMM HRCT1 GIPC1 FAM213A FOSL2 SELENOK PIGR COX7A1 ZC3HAV1 FCN1 BMP5 SPON2 SEC11A C1orf115 DCK MMP23B MMRN1 ITGB7 ITM2A AC004687.1 RPL10A PPP1R15A CD69 SLC12A2 ITGB7

separation of epithelial, stromal and immune cells

Cell split