knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p009t2

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p009t2"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p009t2.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 6670 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 4112 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 26 3 4 5 6 7 8 9
1 CCL4 PCCA AIF1 AQP8 CA1 LEFTY1 GUCA2A IGLL5 MKI67 APOE MS4A1 IGLV3-1 CD2 PRSS56 NXPE1 GUCA2A IGFBP7 CPA3 FLT3 COL3A1 IL7R PCCA DERL3 B3GNT7 MUC2 FOXP3 MZB1
2 CCL5 LCN15 MNDA CLCA4 CEACAM7 OLFM4 TMIGD1 MZB1 RNF43 C1QB IGHD DERL3 CD40LG DPEP1 PLCE1 GUCA2B COL4A1 TPSAB1 TLR10 COL1A2 LTB IGFBP2 TNFRSF17 NXPE4 SPINK4 CTLA4 TNFRSF17
3 GZMA DPEP1 LST1 GUCA2B SLC26A3 PRAC1 CA4 DERL3 ALPK3 C1QA TCL1A IGHG3 IL7R RNF43 PPP1R12B SLC26A3 SPARC MS4A2 IL22RA2 COL6A3 CD3D NPTX2 MZB1 NXPE1 ITLN1 ICOS DERL3
4 NKG7 IGFBP2 VCAN CA4 CDKN2B-AS1 SLC28A2 CEACAM7 TNFRSF17 CENPJ C1QC PAX5 IGHGP CD3D IGF2BP1 FRYL CEACAM7 SPARCL1 HPGDS CLEC9A BGN RPS27 FAM3B IGLV3-1 NUPR1 REG4 TNFRSF4 FKBP11
5 KLRD1 SOX9 FPR1 GUCA2A GUCA2A ADH1C CLCA4 POU2AF1 CENPF GPNMB BANK1 MZB1 CD3G ASCL2 HSD11B2 CLCA4 VWF KIT CD1C COL5A2 TRBC2 LCN15 FKBP11 LEFTY1 REP15 TNFRSF18 CD79A
6 GZMB RNF43 CSF1R CEACAM7 CA2 B3GNT7 SLC9A3 IGHA2 ATAD5 FCGR3A LINC02397 TNFRSF17 KLRB1 GAS6-AS1 VMP1 TMIGD1 MGP CTSG IDO1 THY1 TRAC VSNL1 CD79A MUC4 KLK1 TIGIT POU2AF1
7 CD8A IGF2BP1 ADGRE2 SLC26A3 SLC26A2 RNF186 CEACAM1 FKBP11 DPEP1 PLA2G7 FCRL1 IGHG4 CD69 CDC20 CENPF AQP8 ACKR1 SLC18A2 CD1A COL12A1 RPL28 KRT23 IGKJ5 FAM3D B3GNT6 SPOCK2 IGKJ5
8 TRGC2 PERP MPEG1 TRPM6 SELENBP1 CFTR SLC26A3 FCRL5 RANBP6 FPR3 CD22 IGKJ5 CD52 CENPF CDHR5 COL15A1 HDC HLA-DQA1 MYH11 RPL34 RBP2 JSRP1 PIGR ATOH1 IL2RA TENT5C
9 GNLY GPX2 CSTA MDK CDHR5 AGR3 MDK CD38 PLEKHA4 MS4A4A VPREB3 FKBP11 CD3E CCNB1 MS4A12 PCDH17 RHEX PIK3R6 SULF1 CD2 TM4SF1 POU2AF1 OLFM4 HEPACAM2 CD28 FCRL5
10 HOPX ASCL2 CPVL TMIGD1 C1QTNF12 NXPE4 DHRS9 CD79A XRCC2 SLCO2B1 IGHM XBP1 GPR171 MKI67 FABP1 GNG11 KRT1 CFP DCN RPL11 SOX9 FCRL5 PRAC1 TPSG1 DUSP4 JCHAIN
11 PRF1 SLC12A2 LILRA5 CD177 SLC4A4 CREB3L1 EGLN3 TENT5C IGF2BP1 MS4A7 FCER2 POU2AF1 TRAC PCCA TSPAN1 CALCRL GCSAML CD1E COL14A1 CD3E TACSTD2 CCR10 AGR2 FCGBP IKZF2 SEC11C
12 GZMH KRT23 LILRB2 MS4A12 FABP1 NXPE1 CDKN2B IGLC7 TIGD1 CD163 FAM129C CD79A CXCR4 IGFBP2 SELENOP RAMP2 IL1RL1 WDFY4 C1S RPL13A PERP SLAMF7 PCK1 ANO7 CD2 IGHA2
13 CTSW GGH CYBB SLC17A4 CKB MUC4 CDA CD27 BRCA2 ADAMDEC1 CR2 SEC11C TNFAIP3 TOP2A MUC12 CDH5 TPSD1 CD207 PDGFRB BTG1 RCN1 IGHA2 SULT1B1 CAPN9 LINC01943 CD27
14 XCL2 NPTX2 HCK TMEM37 MUC12 SULT1B1 SMPDL3A CCR10 GAS6-AS1 MSR1 AFF3 IGHG2 RORA SURF6 CA1 AQP1 GATA2 CPVL ASPN RPS27A CNN3 SEC11C PLA2G2A SPDEF TRAC RAB30
15 TRDC CEL TYROBP SDCBP2 MS4A12 TCEA3 HHLA2 GNG7 AC103702.2 FOLR2 CD83 FCRL5 GZMA TPX2 SLC4A4 CRIP2 SVOPL GRASP SDC2 SPOCK2 GGH FAM92B UGT2A3 ZG16 LAYN CD38
16 GZMK PHB2 CLEC10A SMPDL3A PHGR1 DMBT1 TRPM6 PIM2 TOP2A CD209 TNFRSF13C PRDX4 TRAT1 SAPCD2 PLAC8 CLDN5 CDK15 LY86 PCOLCE RPS15A AL161431.1 XBP1 B3GALT5 ST6GALNAC1 CD3D SSR4
17 CD3E HMGA1 SLC8A1 CDHR2 FXYD3 NUPR1 MS4A12 SEC11C LCN15 MERTK LINC00926 JCHAIN RPLP1 PITX1 PHGR1 CLEC14A CMA1 HLA-DQB1 DKK3 RPL13 MET PRDX4 SELENBP1 SERPINA1 LTB XBP1
18 IFNG RPL37A NCF2 C11orf86 KRT19 MUC5B GUCA2B JCHAIN ONECUT2 LILRB5 HLA-DPB1 SPAG4 BTG1 ATAD5 FXYD3 WWTR1 ITGA2B HLA-DMB CDH11 CXCR4 BMP7 JCHAIN PLCE1 FAM177B IL2RB PIM2
19 CD3G PTMS C1orf162 PDE9A PRSS3 GOLM1 MEP1A SLAMF7 RBBP7 TREM2 BLK SSR4 LINC01871 BIRC5 TRPM6 FSTL1 LTC4S SPIB CARMN BCL11B FOXQ1 CD38 SLC28A2 KIAA1324 RASGRP1 JSRP1
20 KIR2DL4 PHB C5AR1 CDHR5 CLDN8 KCNN4 CDHR5 XBP1 PRSS56 SUCNR1 HLA-DPA1 SLAMF7 CD6 PLEKHA4 CA2 HTRA1 CLU AIF1 PCDH18 RPL32 NDUFA4L2 CD27 GOLM1 BEST2 CD3E TP53INP1
21 CD7 DSP FPR3 TSPAN1 TSPAN1 FAM3D PDE9A ADA2 MLXIPL GPR34 CCR7 IGKC SPOCK2 MLXIPL CDKN2B-AS1 ADGRF5 AC106739.1 NR4A3 SLIT3 RPS3A RNF43 SPCS3 MAOA RAP1GAP CD7 GNG7
22 CST7 JUP CD300E CDA HRCT1 HMGCS2 TMEM37 CRELD2 WDR34 MRC1 HLA-DRB1 SPCS3 GIMAP7 CENPJ C2orf88 KDR MAOB CLIC2 CD248 TSC22D3 S100P SSR4 CA12 RASD1 CD3G UBE2J1
23 CRTAM S100A14 FGR PRSS3 SELENOP ST6GALNAC1 TMPRSS2 RAB30 SLC25A10 MS4A6A HLA-DRA IGHG1 TRBC2 DKC1 ISG15 CAVIN2 AKAP12 HLA-DRB5 EDNRA RPL3 NDUFA8 SPAG4 MUC5B CLCA1 CCR6 PRDX4
24 HCST CD24 IL1B PLAC8 LGALS4 SLC6A14 GPA33 SSR4 SOX4 MPEG1 IRF8 ALDH1L2 RPL28 TRAP1 MDK MMRN2 ADCYAP1 LST1 ADGRA2 RPLP1 AHCY SDF2L1 CES2 PRUNE2 TNFRSF9 ELL2
25 GPR171 TRAP1 CD93 SELENOP AMN ATP2C2 SDCBP2 SPCS3 CLSPN GAL3ST4 CXCR5 JSRP1 RPS27 MCM4 CYP3A5 FLT1 RGS13 SPI1 MXRA8 RPS12 S100A14 MANF SI CPE TRBC2 AC104024.1
26 CD69 RPL23 RAB31 SLC9A3 PIGR TNFRSF11A C11orf86 UBE2J1 NOM1 C3AR1 HLA-DQB1 HERPUD1 PTPRC AL355338.1 SMIM22 LAMA4 SCN7A JAML FOXF1 TPT1 MMP7 LINC02362 CFTR MLPH RORA IGKC
27 CD52 FERMT1 IGSF6 GPA33 PLAC8 SNORC CA2 JSRP1 KNOP1 STAB1 CD37 IGKV4-1 TSC22D3 LCN15 PRSS12 APLNR NTRK1 MARCH1 CDH6 RPS16 ZDHHC9 SELENOM KLF5 NEURL1 LINC02195 FKBP2
28 CD160 HSPD1 FGL2 TMPRSS2 C2orf88 PLA2G2A SLC51B SSR3 HIST1H1B ADAP2 CD79A SPCS2 GIMAP4 XRCC2 PRSS3 PLVAP P2RY14 BATF3 COL8A1 RPL10 DSP TENT5C LGALS4 GPR153 SLAMF1 HERPUD1
29 CD3D ATP5MC1 MS4A6A TRIM31 B3GALT5 SLPI MXI1 SDF2L1 FASN LINC01094 MARCH1 TENT5C TRBC1 PHB TMEM54 S1PR1 CATSPER1 HLA-DQA2 GPC6 PTPRC VPS25 MEI1 MT1E FMOD LCK SPCS3
30 SCML4 DKC1 SPI1 HIST1H1C FLNB TSPAN13 TSPAN1 FKBP2 ENC1 SDS CD74 GNG7 S100A4 NOP56 SLC26A2 SOX18 PTGS2 DNASE1L3 LMOD1 RPL29 CEACAM6 TXNDC15 CDC42EP5 TFF3 TRBC1 IGLV3-1
31 LINC01871 GGCT CD36 SGK1 KRT20 RHBDL2 KRT20 EAF2 CDX2 NPL HLA-DQA1 FAM92B ZFP36L2 BOP1 DDX60 SELP SLC45A3 PLD4 CSPG4 TRBC1 PHLDA2 UBE2J1 ELF3 TBX10 TTN HSP90B1
32 CXCR4 GAPDH OLR1 PTPRR PLA2G10 AGR2 AQP8 MANF MACC1 A2M CR1 SELENOM LTB GINS2 SCNN1B EMCN ST8SIA6 PPP1R14A ADAMTS2 TXNIP S100A16 PDK1 CKB NUPR1 SIRPG NUGGC
33 ITGA1 FAM3B S100A8 ISG15 SMIM22 PAPSS2 CDKN2B-AS1 HSP90B1 CDK12 IGSF6 RPS11 CD38 RPS19 EPHB3 SDCBP2 CYYR1 ARMH1 ITGAX ADAMTS12 RPS6 CLDN1 BRSK1 MUC12 CREB3L1 CREM SLAMF7
34 GZMM RPL35 C3AR1 CEACAM1 VSIG2 MAOA PLAC8 PRDX4 TRAP1 FCGR1A FCMR PIM2 TPT1 HMGA1 CA4 TM4SF18 IL13 MS4A6A ARHGEF25 RPL9 JUP ALDH1L2 CES3 L1TD1 PBXIP1 LINC01480
35 TRBC1 NHP2 KCTD12 C2orf88 KRT8 SPINK5 XDH ELL2 VARS APOC1 TLR10 CD27 BCL11B SOX9 KRT20 GJA1 VWA5A HCK C11orf96 RPLP2 DMAC1 HERPUD1 SPINK5 WFDC2 ZC3H12D CCR10
36 PTPRC DMAC1 S100A9 HPGD SCNN1B CES2 EMP1 SPATS2 HELLS CSF1R RPL13A NUCB2 TXNIP PTK7 SGK1 FZD4 CSF1 CACNA2D3 EMILIN1 RPL14 CD9 IGKC GPT B4GALNT2 STK17B ADA2
37 CD2 ZNF703 HLA-DMB SECTM1 PCK1 AKR1C3 PI3 TP53INP1 DSP SLC1A3 CD72 MEI1 AC058791.1 RBP2 CDKN2B PREX2 SMIM1 ARHGAP22 THBS2 ETS1 SLC2A1 IGKV4-1 ATP2C2 DNAJC12 RGS1 TCF4
38 BTG1 S100P LYZ MISP IGSF9 CA12 CDHR2 SPCS2 GPX2 AXL HLA-DRB5 ST6GAL1 TMSB4X VARS DST FBN1 DLC1 AC004687.1 GUCY1B1 CD3G MRPL45 FKBP2 CA2 FAM3D PTPRC SPCS2
39 XCL1 RPL31 TLR2 FXYD3 TMEM54 KLF5 PRSS3 MEF2C CCDC34 MAFB RPS8 TP53INP1 FYB1 TCOF1 CD177 PXDN OSBPL6 C1orf162 LHFPL6 RPL18A RPF2 SSR3 CD24 MUC5AC SKAP1 FBXW7
40 TRGC1 PSMB7 HLA-DRB5 IFI27 GPA33 PDZK1IP1 CA1 MANEA MCM4 LRRC25 SMAP2 FKBP2 RPL34 WDR34 PCK1 CALD1 PTGS1 CD86 PDLIM3 RPS15 CASC8 PIM2 SLPI AGR2 IL7R TXNDC15
41 CLEC2B RPL8 HRH2 HHLA2 IFI27 HOXB13 SLC6A8 HERPUD1 GSPT2 HLA-DMB CXCR4 UBE2J1 CCL5 ONECUT2 MUC13 PALMD ALOX5AP SIGLEC10 COL6A2 RPS29 KRTCAP3 GNG7 AGR3 ERN2 ARID5B SPAG4
42 TMSB4X IPO5 IRAK3 MUC12 S100A6 SI LINC01133 PDK1 NOP56 PLAU EBF1 FAM30A SRGN AURKB SLC17A4 FAM167B EMID1 HLA-DMA NNMT RPL18 CUL4A NUCB2 GPX2 BCAS1 S100A4 SELENOM
43 LCP1 VIL1 CD86 SMIM22 LGALS3 ATP8B1 CD177 AC104699.1 MCM7 NRP1 RPS27 SEL1L THEMIS AC103702.2 IFI27 LDB2 TYROBP HAVCR2 NEXN FAU MACC1 RAB30 DMBT1 ENTPD8 BCL11B PDK1
44 TXK CD9 FAM49A ENTPD8 MISP SYT13 C1QTNF12 IGHA1 HIST1H1E C5AR1 RPLP2 SPCS1 RPS27A TK1 ABCA5 ADGRL2 CST6 S100B PDE1A RORA OLA1 P2RX1 TSPAN8 ANXA13 IL32 MANF
45 PTPN22 SET EMILIN2 FABP1 AOC1 RARRES1 SLC17A4 IGKJ5 BDP1 CTSL LILRA4 ERLEC1 STK17A UTP14A CKB ADAMTS9 HPGD XCR1 TCEAL7 S100A4 UCHL3 HSP90B1 VSIG2 ARFGEF3 TNFAIP3 IGHA1
46 SRGN TPI1 CLEC5A SERINC2 ITM2C UGT2A3 MUC12 IGLV2-8 SURF6 AIF1 RPL34 SDF2L1 RPS15A CCDC34 AMN MMP2 GRAP2 FCER1A FIBIN KLRB1 TSPAN6 LY96 TMC5 TFF1 TBC1D4 ST6GAL1
47 RPS27 CCT4 HLA-DQB1 LINC02023 CLDN3 BACE2 LRRC19 ISG20 ENGASE CMKLR1 REL SSR3 IKZF1 KIF4A PLA2G10 ROBO4 ACSL4 PLEKHO1 TPM2 FYB1 RPL36A AC104699.1 SLC44A4 SYTL2 TNFRSF1B MANEA
48 ZFP36L2 RBP2 SIGLEC10 MEP1A FAM3D SIAE MISP DUSP5 PUM3 CCR1 FAU TXNDC15 ETS1 FBL MXI1 THSD7A MEIS2 AFF3 COX7A1 RPS19 IGF2BP1 MANEA ST6GALNAC1 SCGB2A1 GATA3 FAM30A
49 IL2RB RPL7A RTN1 PPP1R14D SULT1B1 PPP1R1B AOC1 SPCS1 FN1 RASSF4 RPS3A MANF HSP90AA1 FASN TMEM37 F2RL3 RAB33A SERPINF2 AEBP1 RPL19 HMGA1 TP53INP1 PHGR1 MUC4 ETS1 TXNDC11
50 IKZF3 PAICS CD14 CCDC152 ABCA5 NOX1 COL17A1 TRAM2 EIF3B TFEC SELL RAB30 RPLP2 DSP RIOK3 ADGRL4 FCER1A HPS5 CYGB RPS11 GPX2 SPCS2 TFCP2L1 SCNN1A CCR4 SSR3
51 MATK EIF3B BCL2A1 CDKN2B CDC42EP5 AC008397.1 SERINC2 CPNE5 MPHOSPH8 CYBB SPIB CRELD2 RPS29 SRPX2 MISP JAM2 CLNK P2RY13 PDGFRA RPS28 ZIC2 ERLEC1 TCEA3 SMIM14 SLA SDF2L1
52 CD247 RPL36A SIGLEC12 CA2 HSD11B2 LRIG3 PKIB LMAN1 ARGLU1 CPVL LY9 HSP90B1 RPL13A GPX2 TMPRSS2 TIE1 TTLL7 FAM49A EHD2 TNFAIP3 PHB2 CRELD2 HSD11B2 TCEA3 ARHGDIB EAF2
53 CD96 NSA2 SIRPA SPATS2L CD177 PPP1R12B CEACAM5 IGF1 POLD2 VSIG4 RPS5 MANEA RPL11 MCM3 PNPLA2 ERG PNMT BASP1 GUCY1A1 RPL37 GGCT IGKV3-11 MIR194-2HG GSN IL1R1 KLHL6
54 TXNIP MYC PLXDC2 CGN TSC22D1 SLC9A2 SELENOP ERLEC1 CHD4 CD14 RPS27A TRAM2 RPS12 BRCA2 IGSF9 PCAT19 SAMSN1 PLEK SNAI2 SARAF LRPPRC CPNE5 FXYD3 FER1L6 BTG1 CREB3L2
55 TRBC2 SURF6 ITGB2 CFDP1 C10orf99 LCN2 TRIM31 CREB3L2 FERMT1 CLEC7A DAPP1 IGKV1-5 SH3BGRL3 C19orf48 PDE9A RASIP1 P2RX1 SLC24A4 PLN RPL36 ANXA3 SPCS1 ERN2 NEDD4L CXCR6 SPATS2
56 EVL TFF3 RNF144B SLC51B MT1E LGR4 CCDC68 NUCB2 MCM3 MMP12 TCF4 IGHV3-30 FKBP5 PTMS HHLA2 VEGFC ARHGEF6 PHACTR1 PRRX1 SRGN WDR72 EAF2 LCN2 GALNT5 STAM CRELD2
57 HSP90AA1 PTK7 PLA2G7 PKIB PI3 GIPC2 SLC4A4 FBXW7 HMGA1 SIGLEC12 BASP1 CREB3L2 NFKBIA LAS1L CDC42EP5 TEK LIF ABI3 PLAC9 CD69 NIFK ELL2 KRT19 AC005833.1 UCP2 DENND5B
58 TMIGD2 CUL4A TFEC PHGR1 CEACAM1 MT1E LAMA3 PRDM1 TCOF1 SLC8A1 RPS23 PDK1 DDX5 POLD2 TMC5 CXorf36 MITF HLA-DOA ISLR RPS14 FKBP9 CEP128 TRPM4 SMAD9 SRGN CD79B
59 CYTIP CDX2 MRC1 DHRS9 SGK1 NEO1 CGN LINC01781 IER5L PMP22 RPL11 LMAN1 ITK SLC12A2 GPA33 JCAD CAPG RNASE6 COL11A1 CD52 AHNAK2 IGHV4-39 CLMN FOXA3 CLEC2D ISG20
60 RPL28 ALDH1B1 RGS18 TNFSF10 CES2 PIGR DDX60 ST6GAL1 HES1 ACP5 BACH2 ELL2 ALOX5AP HMGB3 SFN CD34 RAB37 HLA-DPB1 ACAN AC058791.1 MRPS35 PNOC CDC42BPA CDC42EP5 CD52 SEL1L
61 ID2 CDCA7 CFP CYP3A5 CDKN2B ASRGL1 MYLK IGLV2-14 PDAP1 SLC15A3 CCL22 ISG20 CYTIP EIF3B CLTB ZNF521 SMYD3 P2RY14 HEYL RPL30 NSA2 IGKV3-20 LGALS3 GALNT7 DUSP16 GYPC
62 CCL4L2 CCT7 CD300A TCF7L2 SLPI RAB25 TMC5 CCDC69 PRRC2A TYROBP RPL9 BTG2 RPL3 FABP6 KRT19 KANK3 ALOX5 LRRK2 EFHD1 RPL35A EPB41L4A-AS1 ST6GAL1 PADI2 MCF2L AC058791.1 ERLEC1
63 FYN RCN1 SMIM25 MUC13 MEP1A TSPAN8 PLS1 TCF4 GOLIM4 DAPK1 CYBB SELENOK DNAJA1 JUP LIPH RHOJ CD69 CLNK ABCC9 RPS8 MAL2 TXNDC11 SLC4A4 NXPE1 TOX2 BTG2
64 STK17A PHLDA2 JAML CA1 DSC2 NFIB C2orf88 CD79B GPS1 SDC3 RPS16 LY96 CD96 ENGASE SHROOM1 ZNF385D ALDH1A1 HLA-DPA1 NOTCH3 RPL21 PLS3 IFNAR2 ATP8B1 WNK4 GBP5 DUSP5
65 ETS1 RPL12 KYNU DST SLC44A4 LIMA1 SCNN1B ICAM2 C19orf48 LY86 RPL32 IGHV1-24 CD7 SLC25A10 EPS8L2 MYCT1 TESPA1 SCIMP ACTA2 CCR6 VDAC1 HSPA13 PYGB DISP2 CD247 NUCB2
66 HLA-E SOX4 CLEC7A EMP1 MGLL MECOM TMEM54 EVI2B PHB ENPP2 BCL11A TXNDC11 RASGRP1 MYC SAMD9 SHANK3 CSF2RB SLC8A1 CCDC102B RPL27A EIF2S3 LMAN1 MT1M ALDH1L1 RTKN2 PRDM1
67 TSC22D3 DSTN SLC7A7 TMEM54 TSPAN8 CDS1 MUC13 SEL1L PAXBP1 PLTP RPS6 IGHA2 RPS16 ENTR1 SPATS2L HSPA12B ANXA1 FGL2 COX4I2 CCR7 MRPS2 CLPTM1L EXPH5 ATP2A3 IL18R1 IGKV1-5
68 RPS19 RPS2 AC020656.1 LAMA3 ETHE1 SHROOM3 IFIT1 ALG5 SLC25A25-AS1 DOCK4 BTG1 IGKV3-11 EMB TOMM40 SPINT1 EXOC3L2 PLPP1 HLA-DRB1 NID1 CD7 MYC FAM30A C10orf99 GALNT12 ITK ERN1
69 CELF2 RPL21 LAT2 KRT20 GGT6 SELENBP1 BTNL3 C16orf54 KCNQ1OT1 HLA-DQA1 RPL10 ALG5 RPL14 FERMT1 SYTL2 NPR1 GMPR SAMHD1 CALD1 RPL10A PGRMC1 IGHA1 AMN TSPAN13 PHTF2 EVI2B
70 EMB MLF2 PTGS2 CLDN4 MAOA REG4 SMIM22 TXNDC11 CHD7 ATP6V0D2 RPL37 IGHM RPL9 MCM7 CAMK2N1 NOVA2 BACE2 MCOLN2 FOXS1 JUNB FERMT1 TPST2 TP53I3 FUT6 CD27 SPCS1
71 GIMAP7 NDUFA8 HLA-DQA1 MXI1 TP53I3 AKR7A3 CYP3A5 PPIB BAZ1B ABCA1 RPS28 SEC61B FAU MET CLDN4 ARHGEF15 CD22 CCDC88A ANTXR1 NACA RPL7 DENND5B LIMA1 FABP2 FYN MEI1
72 ALOX5AP SCD MARCH1 LYPD8 PLS1 ETHE1 HSD17B2 SEC61B ESF1 C1orf54 RPS20 IGHV4-39 CLEC2D PNO1 CGN CCM2L SOCS1 HIC1 S1PR3 DDX5 DARS ISG20 AK1 HID1 AC133644.2 IGF1
73 GPR174 RPL7 SAP30 IL22RA1 TMPRSS2 CDC42EP5 SGK1 LAX1 VEGFA CD68 PPM1K TRAM1 RPL13 NOTCH1 TCF7L2 NNMT GPR65 CTSH MFAP4 RPS4X BOD1 BTG2 SEMA6A NXPE4 FYB1 TRAM1
74 SLFN12L HSPE1 LILRB1 CLTB TST SMIM31 RETREG1 IGHV3-74 CCDC137 P2RY13 HLA-DOB CLPTM1L RPL10 CLSPN DSC2 FILIP1 HLTF BCL2A1 FAM162B RPL24 GAL ALG5 ABCC3 ACSS2 HSP90AA1 LMAN1
75 RUNX3 TSPAN6 CD1C CLDN23 GPT TFCP2L1 SLC1A1 TXNDC15 RIF1 HLA-DOA RPL18A SELENOS ID2 TIGD1 SERINC2 LHX6 CD84 PRMT9 PTN RPL6 ZNF703 CADM1 TMEM54 PRAC1 PRDM1 MEF2C
76 PTMA GAS6-AS1 TNFSF13B CCDC68 C1orf21 TC2N TJP3 HSPA13 CENPX SIGLEC1 RPS12 TMEM258 EIF1 CD3EAP EPS8L3 SOX17 TNFRSF9 P2RY6 FERMT2 RPS18 PDLIM4 ADA2 CDH17 LGALS4 GMFG LINC01781
77 DUSP2 YBX3 MAFB RETREG1 SHROOM1 CD24 HPGD FAM30A RABL6 KCTD12 RPL3 IGKV3-20 RPL32 PAICS HIST1H1C TSPAN18 DTNBP1 HLA-DOB COL5A1 RPL23A RPL23 LAX1 PPP1R12B TPM1 RAC2 ITGB7
78 CLEC2D PM20D2 HLA-DRB1 SLC6A8 CAMK2N1 VSIG2 SGK2 MEI1 AC108134.2 HLA-DQB1 CD79B IGLC3 RGS1 CEL RHOC HECW2 LEO1 RGS18 ADAMTS1 PIK3IP1 ZFAS1 TRAM2 FRYL ATP2C2 CARD16 FNDC3A
79 PARP8 RPS23 THBD MYO15B PKIB DEGS2 DUOX2 SELENOK GADD45GIP1 LILRB2 FAM177B IGHA1 RPL30 ECT2 CEACAM1 FGD5 C1orf162 FGR FBLN1 TMSB4X TPD52L1 SEL1L AOC1 SDR16C5 MALT1 CCDC69
80 SH3BGRL3 MRPL57 LILRA1 LINC01133 MT1M PLA2G10 CEACAM6 AC104024.1 RPL35 SLC7A7 RPL10A HSPA1A CELF2 ENC1 CFDP1 SEMA3F IL18R1 SH2B3 COL1A1 PTMA CCT7 SPATS2 B4GALNT3 KLF4 IKZF4 CPEB4
81 RARRES3 FN1 SCIMP PRSS8 MYH14 SOD3 FXYD3 ITGB7 MNDA GRASP JUN RPS3A NPTX2 SLC9A3 CLEC1A SRGN RASSF2 OR51E1 UBA52 PHB ICAM2 EPS8L3 AGR3 CD4 ORAI2
82 MYL12A CNN3 CEACAM4 SCNN1B PPDPF SPINK1 SCIN BTG2 CCL18 RPL29 IGLC2 SCML4 SOX4 TNFSF10 SERPINE1 ENPP3 HLA-DRA FSTL1 RPS5 MRPS23 PLPP5 SMIM22 TCIM RUNX3 NXPE3
83 ARHGDIB RACK1 CD163 DUOX2 TPRN PALLD TSPAN3 SELENOS SLAMF8 RPL13 H1FX H3F3B ORC6 MVP AFAP1L1 LCP2 RAB31 FOXF2 RPS7 CD24 IGHG3 PAPSS2 VIPR1 LAT ANKRD28
84 RPS27A ACTG1 HLA-DPB1 CLDN3 CES3 APP FABP1 MAN1A1 MARCH1 LAPTM5 LCP1 MCM8 PPP1R14D EGFL7 GALC LSP1 C1R RPS24 YBX3 ZBP1 CDX1 FAM83E TMSB4X IGHG3
85 DDX5 MRPL51 PLXNC1 BTNL3 CA12 DSG2 DSC2 FNDC3B GNB4 RPL28 PIK3IP1 FOXQ1 BLOC1S1 DCHS1 STXBP6 PTPRE DDR2 PFDN5 ACP1 HSD17B8 LGALS2 TC2N DDX5 BCL2L11
86 SLA2 RPL27 SAMHD1 LINC01559 GIPC1 TMEM246 SMIM5 IFNAR2 LIPA HLA-DOA ANKRD12 CDCA7 USP53 SNCG TIAM2 SERPINB9 CLMP RPL5 ACE2 IGHG4 FLNB GNE ACTB TRAM2
87 MYBL1 CEACAM6 RGS2 RSAD2 HHLA2 SLC44A4 CCDC152 PDIA4 LILRB4 RPL19 ANXA1 BRCA1 LLGL2 NID1 RAC2 UVRAG RGS5 RPS13 DSTN LINC01480 CDHR5 QSOX1 SMAP2 GAB1
88 PIP4K2A SPINK1 CLEC4E GIPC1 MXI1 LGALS4 RSAD2 DENND5B VMO1 RPS19 VIM VIL1 ARL14 COL18A1 BTK TNNI2 EGFLAM EIF1 PTMS SEC61B TC2N VSIG2 TSC22D3 MIR29B2CHG
89 RPS15A RPL38 HLA-DPA1 CDKN2B-AS1 DST EMP2 PRSS8 CEP128 TSPAN4 LTB HCST AL161431.1 MYH14 FAM107A NR4A3 NAV1 HIGD1B RPS2 SERPINB1 IGHV1-24 TRIM2 TM4SF5 CYTIP CLPTM1L
90 GPR65 TMEM97 SNX10 GPRC5A CLDN4 S100A16 IFI27 CLPTM1L TLR8 CD19 RPL29 PHLDA2 TFCP2L1 CAVIN3 VIM ZNF385A CNN1 RPL8 RPL7A IGHGP GPA33 AKAP5 HLA-A SELENOK
91 FYB1 LDHB PPT1 MXD1 TFCP2L1 ARHGAP44 PPP1R14D SPAG4 DAB2 RPL23A HSP90AB1 NKD1 VPS13A MMRN1 CD37 RILPL2 PRR16 SMAP2 NHP2 FBXW7 SNORC MGLL SLFN5 EDEM1
92 TRAC ZIC2 AOAH ABCB1 GOLM1 WFDC2 FBLIM1 BCL2L11 RAB31 RPS14 PTMA PSMB7 ST14 CPLX1 PAQR5 GAS7 HSPB6 RPL12 LINC00511 CREB3L2 FAT1 GALNT3 PFN1 ICAM2
93 RPLP2 RPSA CD68 LMO7 TRPM6 C15orf48 SAMD9 DERL1 CD93 RPL18 RPS6 SCD GIPC1 FAM110D CTTNBP2 CXCL16 TBX2 RPS3 LEMD1 SELENOS KRT8 MFSD4A RPS27 IGHG4
94 TNFAIP3 MET HLA-DQA2 TJP3 PDE9A GALNT7 SCNN1G TRAM1 SIGLEC10 RPS29 HLA-E CNN3 ARHGAP29 PRKX TYROBP SGCD ARID5B POMP FUT8 MTUS1 FRYL PHLDA1 TPST2
95 CBLB RPS18 HLA-DRA AC023157.3 NBEAL1 CDH17 RHOC SEL1L3 HLA-DRB5 NR4A2 UBA52 GAL ENG TMEM233 CSF2RA LOXL2 STK17B RPL31 PPIB FZD5 MIA3 JAK3 DNAJC1
96 RPL13A ZDHHC9 BCAT1 GSN EFNA1 ACSM3 INAVA SUB1 CD86 RPS13 ICOS CDT1 COL6A2 AREG ZNF366 BMP5 SELL IGF2BP2 IGHG2 MYO7B NPIPB15 SAMSN1 HSPA13
97 RAC2 TRIM29 FCER1G ADM S100A10 GATA6 ACVRL1 DNAJC1 CTSB RPL35A STK17B IPO5 EHD2 MTCL1 SMCO4 FNDC1 CYTIP TPI1 SELENOK PLCB4 TSPAN1 SH2D2A SEC61B
98 SEPT7 HMGB3 PTPRE EDN3 BICDL2 TST CLDN23 TMEM156 LAIR1 PARP15 ARHGDIB FGFR4 TMEM204 EGR3 LGALS2 EPHA3 RPSA RPL27 GAB1 S100A6 SLC44A4 TNIP3 SELENOS
99 SYTL3 WDR34 RASSF4 SAMD9 SDCBP2 SQOR TMEM236 ERN1 SPI1 BCAS4 LAPTM5 HELLS PTPRM LYL1 FAM49B LINC01082 TOMM7 TMPRSS4 GYPC DGAT1 S100P MAF SEL1L3
100 IL7R ACLY RETN IFIT1 AHCYL2 ERN2 CDC42EP5 U62317.5 TTYH3 RPL14 CD48 PRRC2A LIMS2 IL17RB LYZ GGT5 HSP90AA1 CCT4 TRAM1 LGALS3BP SH3PXD2A ADAM12 FUT8

separation of epithelial, stromal and immune cells

Cell split