knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p009t1

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p009t1"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p009t1.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5474 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2889 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 TPSG1 FAM3B REP15 CA1 MKI67 ITLN1 CD3G CLCA4 TYROBP AQP8 ADH1C GNG13 MZB1 SPARC C1QB MS4A1 LEFTY1 CD3D LCN15 MKI67 OLFM4 SLC26A3
2 KLK1 PCCA MUC2 SLC26A3 CENPF SPDEF CD2 TMIGD1 LILRA5 GUCA2B LEFTY1 SH2D7 DERL3 SPARCL1 C1QC BANK1 OLFM4 IL7R PRSS56 RNF43 NXPE1 CEACAM7
3 REP15 LCN15 SPINK4 CEACAM7 RNF43 REG4 CD3D CA4 AIF1 CA4 SLC6A14 RGS13 IGLV3-1 COL6A2 PLA2G7 TCL1A ADH1C CD3E DPEP1 DPEP1 LEFTY1 CA1
4 ITLN1 KRT23 ITLN1 CDKN2B-AS1 DPEP1 REP15 CD3E GUCA2B CFP TMIGD1 OLFM4 BMX IGKJ5 MGP MSR1 IGHD B3GNT7 CD2 RNF43 CENPF B3GNT7 GUCA2A
5 REG4 IGFBP2 REG4 CA2 ALPK3 KLK1 TRAC C11orf86 MS4A6A GUCA2A UGT2A3 SH2D6 TNFRSF17 CALD1 TREM2 VPREB3 NXPE1 CD3G IGF2BP1 GAS6-AS1 MUC4 CA2
6 B3GNT6 NPTX2 FCGBP SELENBP1 TOP2A ST6GALNAC1 KLRB1 AQP8 MNDA CLCA4 B3GNT7 HPGDS CD38 COL15A1 GPNMB IGHM NXPE4 TRAC ATAD5 CENPJ PLA2G2A FABP1
7 ATOH1 RCN1 ST6GALNAC1 SCNN1B ATAD5 SERPINA1 CD7 CDA FPR1 MS4A12 CWH43 B4GALNT4 SLAMF7 COL18A1 C1QA TNFRSF13C PIGR TRBC1 ALPK3 ATAD5 NUPR1 CDKN2B-AS1
8 KIAA1324 ASCL2 SERPINA1 CD177 ONECUT2 B3GNT6 SPOCK2 HRASLS2 NR4A3 CEACAM7 PRAC1 TRPM5 FCRL5 GNG11 FPR3 CD83 PRAC1 CD7 ASCL2 ALPK3 DMBT1 CD177
9 SPDEF DPEP1 L1TD1 PI3 CCDC34 ZG16 CTLA4 MS4A12 SPI1 SLC26A3 SLC28A2 CRYBA2 POU2AF1 PCDH17 CD209 FCER2 PLA2G2A SPOCK2 MCM3 ONECUT2 PIGR C1QTNF12
10 SERPINA1 GAL ANO7 GUCA2A CENPJ ATOH1 ICOS CEACAM1 FGR SLC51B RNF186 DKK3 CD27 ADGRF5 MS4A4A CD22 GOLM1 TRBC2 CEL TOP2A PRAC1 MS4A12
11 CAPN9 GGH KLK1 C2orf88 COL27A1 FCGBP GZMA GUCA2A LST1 PKIB RARRES1 DSP JCHAIN FBN1 ADAMDEC1 CD37 DMBT1 SRGN PCCA XRCC2 PLCE1 CDHR5
12 ST6GALNAC1 PRSS56 TFF3 CKB PRSS56 SPINK4 RORA ABCG2 MPEG1 SLC17A4 RHBDL2 SOX4 JSRP1 KDR CD163 PAX5 NUPR1 PTPRC GAS6-AS1 PLEKHA4 NXPE4 PHGR1
13 FMOD CMSS1 B3GNT6 SLC4A4 ENGASE MUC2 TRBC2 HPGD SLC8A1 CD177 SI CMYA5 FKBP11 FERMT2 APOE CD79A SLC28A2 GIMAP7 XRCC2 COL27A1 PPP1R12B SLC26A2
14 ZG16 ACE2 MLPH KRT19 SOX4 NEURL1 CXCR6 DHRS9 ADGRE2 HPGD ISX MATK CD79A EHD2 SDS LINC02397 PCK1 CXCR4 CCDC34 KAT2A PCK1 CKB
15 RAP1GAP CCT4 ZG16 SLC26A2 TPX2 RAB26 LCK SMPDL3A LILRB2 TRPM6 DMBT1 PTGS1 MEI1 HTRA1 LILRB5 HLA-DPB1 AGR3 FYB1 MCM4 SRPX2 B3GALT5 SELENBP1
16 FAM177B SET RAB26 C1QTNF12 BRCA2 TFF3 SIRPG SLC9A3 CD300E C2orf88 KCNN4 RPL35 IGHGP CDH5 AXL FCRL1 SLPI CD247 MACC1 KNOP1 TNFRSF11A FXYD3
17 DNAJC12 RPL35 CLCA1 C10orf99 GAS6-AS1 TPSG1 TRBC1 CEACAM7 NCF2 LINC02023 AGR3 TSPYL4 CCR10 CRIP2 FCGR3A HLA-DPA1 FAM3D TSC22D3 ONECUT2 MLXIPL MIR194-2HG TRPM6
18 MUC2 VSNL1 PRUNE2 FABP1 C21orf58 WFDC2 CD247 XDH HRH2 CEACAM1 SIAE LINC02432 CADM1 SOX18 CMKLR1 CD52 PLCE1 CD69 MLXIPL BRCA2 MUC12 KRT19
19 WFDC2 PERP MUC4 FXYD3 WDR34 MLPH SKAP1 EMP1 VCAN PLAC8 C15orf48 RNF213 GNG7 ADGRL4 TFEC AFF3 KCNN4 TNFAIP3 SRPX2 TRIM44 GOLM1 SCNN1B
20 CREB3L1 HSPD1 ERN2 PRSS3 CKAP5 KIAA1324 RASGRP1 SLCO2A1 TNFSF13B TMEM37 GOLM1 MARCKSL1 PIM2 LAMA4 SLAMF8 FCMR TNFRSF11A KLRB1 HMGA1 NOP56 ELF3 PKIB
21 BEST2 BAG2 AGR2 CLDN8 SURF6 CPE CD6 PKIB FAM49A SDCBP2 SPON1 MPHOSPH8 FAM92B A2M MS4A6A CD69 SULT1B1 TIGIT IGFBP2 CDK12 MTRNR2L12 PLAC8
22 FCGBP IPO7 RAP1GAP PHGR1 IGF2BP1 RAP1GAP THEMIS TMEM37 RNF144B CDA SLPI TPM1 AC104699.1 IGFBP7 APOC1 HLA-DRA LRIG3 TRAT1 DKC1 HIST1H1E AK1 MUC12
23 TFF3 PTK7 SYTL2 VSIG2 CEL AGR2 GZMM SLC17A4 RAB31 SELENOP ARHGAP44 IL17RB IGHG4 PXDN MS4A7 CR2 HOXB13 ITK PAICS SOX4 TFCP2L1 SLC4A4
24 SPINK4 SNRPF ARFGEF3 ETHE1 XRCC2 CLCA1 IL7R SLC26A3 CPVL HSD17B2 BMP2 HIST1H4C IGHG3 PLVAP SUCNR1 BLK MAOA RORA EIF3B RANBP6 VMP1 SELENOP
25 RASD1 RNF43 FRYL LGALS3 MACC1 HEPACAM2 LINC01871 SULT1A2 CSF1R SGK1 SEMA6A BPTF SPAG4 PCAT19 STAB1 CXCR4 B3GALT5 TXK POLD2 MACC1 PI3
26 GPR153 RPL36A ATOH1 SLPI SLC25A10 ENTPD8 FYB1 TRPM6 JAML CA1 TSPAN12 GSTP1 LAX1 NNMT FCER1G HLA-DRB1 LCN2 BTG1 NOP56 SURF6 SGK1
27 B4GALNT2 RPL8 SPDEF LGALS4 HIST1H1B TFF1 TIGIT CIDEC THBD SLC9A3 PLA2G2A HMGB1 IGHA2 MCAM SLC1A3 HLA-DQA1 CFTR GPR171 IPO5 GSPT2 C2orf88
28 TFF1 GGCT RASD1 CDHR5 FERMT1 FAM177B GPR171 SLC51B TLR2 MDK KLF5 HNRNPU KCNN3 FILIP1 MMP12 HLA-DQB1 KLF5 FYN SURF6 NOM1 TMIGD1
29 GALNTL6 IGF2BP1 HEPACAM2 ITM2C PRRC2A ANO7 IL2RB HHLA2 FPR2 TSPAN1 CES2 DSTN ADA2 PREX2 FOLR2 IRF8 SELENBP1 CCL5 POLQ BAZ1B TSPAN1
30 SCGB2A1 TMEM97 UNC13B CES2 TCOF1 RASD1 CD52 C2orf88 PTGS2 TRIM31 GIPC2 NORAD SEC11C NID1 MERTK CD79B CES2 LTB ACE2 TMC8 AQP8
31 FABP2 LDHA ANKRD18A PLAC8 IPO5 BCAS1 CD40LG SDCBP2 BCL2A1 CDKN2B PIGR ARGLU1 TENT5C CLEC14A TMEM26 LAPTM5 MGST2 ETS1 WDR34 ARGLU1 PRSS3
32 AGR2 CCT2 NXPE1 AOC1 NOP56 SYTL2 GIMAP7 TRIM31 C1orf162 FABP1 NUPR1 SET PECAM1 THY1 CD300A CD19 MUC4 CYTIP GINS2 ESF1 IGSF9
33 MLPH MEST GALNT5 B3GALT5 HUWE1 GSN CD28 CD177 KYNU KRT20 AKR1C3 KRT18 MANEA DLC1 GPR34 LTB GPX2 RPS27 HSPD1 ENGASE FLNB
34 ANXA13 RPL7A SCNN1A HRCT1 CDK12 MUC4 PTPRC COL17A1 CLEC10A PRSS3 SULT1B1 KCNQ1OT1 TXNDC15 ROBO4 C3AR1 RHOH SPINK1 GIMAP4 PLEKHA4 REXO4 KRT20
35 CPE RPL23 PRKAG2 TSPAN1 RANBP6 GNE GMFG CDKN2B AC245128.3 LYPD8 MAOA LUC7L3 SPCS3 EMCN LINC01094 MARCH1 MUC12 TXNIP LARGE2 SLC25A25-AS1 CLDN8
36 FOXA3 KRTCAP3 MUC5B TRPM6 DSP ERN2 SLA LYPD8 CD86 PHGR1 CHP2 ALPK3 ALDH1L2 ADAMTS4 IGSF6 STK17A PPP1R1B RGS1 MKI67 WDR34 AC092834.1
37 TFF2 PHLDA2 SH3PXD2A SDCBP2 IGFBP2 SCNN1A TNFRSF18 ABCB1 ITGAX DHRS9 HOXB13 ATRX EMP3 ADAMTS1 FCGR1A CD72 UGT2A3 CD48 PHB CDK5RAP2 MYLK
38 NEURL1 RSL1D1 ATP2A3 CDKN2B SRPX2 FMOD ITGAL MDK CLEC4E C11orf86 PPP1R1B GOLIM4 IGKV4-1 MAP1B ADAP2 CD74 TXN CD52 EIF2S3 ERICH1 GUCA2B
39 ENTPD8 CD81 SIPA1L2 KRT8 SOX9 PRUNE2 TNFAIP3 MXI1 NLRP3 PI3 LRIG3 DES CPNE5 VWF A2M POU2F2 C10orf99 GZMA ENGASE PURB SLC17A4
40 TSPAN13 SHMT2 AKAP9 PIGR DKC1 DNAJC12 LTB PPP1R14D RASSF2 CDKN2B-AS1 TXN YWHAE ELL2 CYYR1 CSF1R EBF1 MUC5B IKZF3 RPL35 MPHOSPH8 CEACAM1
41 HEPACAM2 HSPE1 SLC17A9 MS4A12 EIF3B FABP2 SH2D2A PLAC8 FGL2 CDHR5 MGST2 PCSK1N PRDM1 BGN MNDA CCR7 MT1E RPLP1 AC026471.1 MTRNR2L12 CA4
42 TMEM61 NDUFA8 BCAS1 TMEM54 CD3EAP HID1 S100A4 CDHR2 CSTA SCNN1B MGST3 RPL31 LY96 TMEM204 RENBP SMAP2 PPP1R12B RPL28 CENPJ ANO9 LGALS2
43 GSN HMGB3 FAM83E SLC51B KAT2A MIA3 SRGN SGK1 C3AR1 FXYD3 C10orf99 AFDN RAB30 COL5A2 CCR1 KLF2 SI ARHGDIB CDCA7 RNF213 GPA33
44 PRUNE2 DKC1 DNAJC10 S100A6 JUP MUC5B ARHGDIB KRT20 HCK PDE9A RAB25 JUP PRDX4 ADGRL2 FAM20C SELL AKR1C3 RPS15A FANCB ATRX LINC01133
45 FAM3D RPL37A GALNT7 CA4 ANO9 ATP2A3 SLAMF1 SLC15A1 CLEC7A HIST1H1C LIMA1 CEACAM6 NUGGC GJA1 P2RY13 RCSD1 TFCP2L1 RPS27A MYBL2 KCNQ1OT1 LINC02023
46 NUPR1 GSTP1 CCNL2 CEACAM1 EXOSC2 GALNT3 SLFN12L CDKN2B-AS1 OLR1 NAAA GALNT1 CHD6 SSR4 TIE1 MRC1 TSC22D3 TSPAN8 RPS16 CLSPN HES1 CES2
47 DLL1 NONO NEDD4L GIPC1 PARP4 KSR2 GIMAP4 SECTM1 PLEK RHOC CDS1 FGFR4 IGHG2 COX7A1 AIF1 PARP15 KCNE3 EVL TRAP1 PIGR
48 PRAC1 CEACAM6 ENTPD8 COL17A1 HSPD1 DNAJC10 FYN TMPRSS2 PLXNC1 CA2 AC025580.1 TRIM44 MANF LHFPL6 SLC8A1 CD53 SIAE RPL34 MYC GIPC1
49 RAB27A JUP ATP2C2 PLA2G10 TRMT10C CAPN9 RAC2 RHOF PTAFR EDN3 RARRES2 TOP2A SELENOM CALCRL MPEG1 BTG1 PGM2L1 TMSB4X NR2F1 LGALS3
50 SMIM14 TM4SF1 TRPM4 MUC12 RPL35 XBP1 RGS1 SLC40A1 CD93 IFI27 NXPE1 TMSB10 PNOC RAMP2 GAL3ST4 FAM129C TCEA3 RPS29 JUP SHROOM1
51 LYZ ZIC2 AK1 CCL28 CDX2 RAB27A PYHIN1 NAAA CCDC88A GPA33 DSG2 PTMA EAF2 FSTL1 TYROBP CD48 LIMA1 TPT1 WDR72 TMEM54
52 ALDH1L1 HSD17B12 MIA3 SELENOP KNOP1 NUPR1 LAT ACHE FCER1G SMPDL3A MT1E PKM KLHL6 APLNR ENPP2 RPL18A ISX BCL11B SOX9 B3GALT5
53 TSTA3 NUTF2 GOLGB1 AMN REXO4 L1TD1 RGL4 SLC1A1 OSM MXI1 GPX2 EIF5B IFNAR2 ERG VSIG4 LINC00926 LGALS2 PIK3IP1 GGH ABCA5
54 TCEA3 IFITM3 NKTR MAOA HIST1H1E NEDD4L ETS1 TIMP2 CSF2RA CASP5 LCN2 MTDH IGF1 CD34 MMP9 COL19A1 NANS S100A4 HMGB3 MXI1
55 SLC9A3R2 ALDH1B1 AHI1 FLNB EPHB3 CREB3L1 APBB1IP LRRC19 SIGLEC10 ABCB1 HSBP1L1 CDX2 CRELD2 FLT1 CD86 RPS27 ELF3 IKZF1 PSMC3 PDE9A
56 TUSC3 IPO5 CRACR2B SPINK5 MCM7 GALNT5 PTPN22 PRSS3 STX11 TMEM54 TMEM30B ACTN1 SPCS2 SOX17 TMIGD3 PTPRC NFIB ARL4C CDC6 ITM2C
57 LGALS4 ACTG1 IER3 LGALS2 NCL SLC17A9 LCP1 EDN3 CD4 ATP1B3 NXPE4 KRT8 TP53INP1 TEK CLEC7A CXCR5 CDX1 VIM AL355338.1 AMN
58 NEDD4L TRAP1 CLMN TST PSMB7 GPR153 CYTIP CLDN23 FPR3 RHOU CMTM4 KMT2C HERPUD1 CAVIN2 CPVL BACH2 ASRGL1 AC058791.1 PRRC2B VSIG2
59 AGR3 HSP90AB1 TTC3 MISP PDAP1 MT1G MAF USP2 S100A8 C1orf115 UGDH AZGP1 XBP1 MMP2 LST1 LY86 LGALS3 IL2RA RCN1 SDCBP2
60 AC005833.1 PSMB7 DISP2 GPA33 PTMS SMIM14 GBP5 C1orf115 HLA-DRB5 PLA2G10 DEGS2 SUDS3 PDK1 TM4SF18 HAVCR2 RPS23 SLC9A2 RPS19 GOT2 LGALS4
61 KLF4 RPL7 HSD11B2 VARS ATP2C2 CCL5 CGN FLT3 MISP IGFBP4 HEPACAM2 SDF2L1 CXorf36 SPI1 RPS11 CES3 HCST PCNA PCK1
62 GALNT5 CETN2 S100A10 PRRC2B FAM83E GRAP2 HSD17B2 HLA-DMB MEP1A FAM3D SCAND1 NXPE3 CAVIN1 SIGLEC1 RPS8 RHBDL2 CLEC2D XPO1 HHLA2
63 ANO7 CDK4 LINC02023 TRIM44 DOPEY2 CST7 PLPP1 GNA15 LINC01133 EBPL SPTBN1 CEP128 PCDH12 RAB42 RPL13A SEMA6A RPS12 PUM3 CDKN2B
64 SMIM33 LINC00511 SCNN1G POLD2 IL1B ZAP70 RHOU CYBB PDZD3 TSPO GAPDH CAV1 LDB2 PILRA HLA-DRB5 PYGB FAU CD3EAP HRCT1
65 ARFGEF3 PTMS KRT20 ZFHX3 TCEA3 ITK PI3 IGSF6 SMIM22 TNFRSF11A PTMS TPST2 SNCG NPL RPS5 PKP2 RPL30 POLE3 SMIM22
66 MIA3 HMGA1 DHRS11 NOTCH1 GALNT12 CORO1A GPA33 LCP1 C1QTNF12 CDX1 LCN15 P2RX1 HSPA12B NRP1 RPS3A UQCRC1 RPL14 GIT1 KRT8
67 FIBCD1 RPS4X PKIB ERICH1 WNK4 BCL11B CA2 RGS2 SERINC2 LGALS3 RAB11FIP1 AC104024.1 COL12A1 ADGRE2 RPL34 RARRES2 CST7 RBBP7 PLCE1
68 KDELR3 NQO1 AHCYL2 CENPE B4GALNT2 ALOX5AP PTPRR CD36 MYL12B ETHE1 AVIL IGKC COL4A1 LRRC25 RPL11 ATP2C2 PRKCQ SMC1A RHOC
69 SCNN1A DARS ZBTB7B CARS2 ALDH1L1 FOXP3 PDE9A CD300A HHLA2 TSPAN8 PDAP1 ZBP1 ENG LILRB4 TXNIP NEO1 SMAP2 SLC25A10 ETHE1
70 GALNT7 ACP1 ACVRL1 NOXO1 CRACR2B LCP2 ADGRF1 GRASP TJP3 NIPSNAP3A IL13RA1 IGLL5 MMRN2 ATP6V0D2 AC004687.1 LPCAT4 RPL10 PKP3 CGN
71 CDC42EP5 RPL39 MT1M ATXN7L3B CDC42EP5 HCST SCNN1B HLA-DQA2 PPP1R14D PALLD SPIB LINC01480 CFH LILRB2 RPL37 FAM162A RPS28 PHLDA2 AOC1
72 GALNT3 EIF2S3 SGK2 KCNQ1OT1 TSPAN13 CD4 SMIM5 HLA-DPB1 TMPRSS2 GPR160 VEGFA ICAM2 PALMD GNB4 RPL32 NFIA HLA-E PSMB7 LRRC19
73 SYTL2 ABHD12B PCK1 LRPPRC FAM3D GATA3 RSAD2 SMIM25 GIPC1 PPP2R5E NCL ERLEC1 TMEM47 TNFSF13B FAU SPINK5 RPL3 MTHFD1L MT1E
74 KCNMA1 TSPAN6 SULT1B1 PHB ALDH1A1 LAPTM5 EGLN3 SIGLEC12 ANPEP CREB3L1 CD24 CCDC69 ANGPTL2 SIGLEC7 RPS16 HSBP1L1 RPS3A FERMT1 CCDC68
75 BCAS1 DSTN MT1E TRAP1 NXPE4 CD5 HIST1H1C LILRB4 LAMA3 LGALS2 PSMB7 BRSK1 NRP1 SLCO2B1 RPS27A VSIG2 RPL13A NAP1L4 S100A6
76 MUC4 ZDHHC9 TP53I3 PHLDA2 GALNT7 CD69 TSPAN1 SH2B3 CFDP1 ATP8B1 RNF43 FKBP2 F2RL3 RBP1 GPR18 CA12 GMFG COL27A1 CAMK2N1
77 FRZB CCT7 PARM1 PSMC3 MCF2L EVL SELENOP MS4A7 MYO15B PCK1 HNRNPA2B1 TCF4 AFAP1L1 RGL1 RPL28 AMN SARAF CBX5 MEP1A
78 SH3BGRL3 PLS3 CLDN3 ARGLU1 FRYL CXCR4 MISP C5AR1 SAMD9 SPINK1 DEK LGALS1 HEG1 LAIR1 SLC2A3 GPT RPL9 FASN MISP
79 HID1 ALYREF GPT BRD7 KIAA0319L CLEC2D MYLK HCLS1 SECTM1 CFTR CENPJ GYPC TSPAN18 SIGLEC10 RPS20 RAB25 GATA3 KNOP1 CLDN4
80 TM4SF5 SRPK1 TMPRSS2 BPTF AKAP9 IKZF1 LAMA3 HLA-DPA1 CLDN23 B3GALT5 SRP14 VIM CLDN5 RAB31 RPL30 CA2 CD28 EXOSC2 HSD11B2
81 GFPT1 FERMT1 GOLM1 PMEPA1 LGALS4 PRF1 RFK S100A12 MUC12 ARF4 H3F3B SSR3 LOXL2 PKD2L1 RPS19 LGALS4 RPL11 MCM7 LIMA1
82 KRT18 EPDR1 PLA2G2A PRKDC KCNK6 JAK3 SPATS2L HLA-DQB1 CYP3A5 PAPSS2 SMC1A ISG20 ARHGEF15 CD93 RPL3 IMPA2 RPS14 BRCA2 TPRN
83 GNE MACC1 IFI27 ILF3 UNC13B LINC01943 DUOX2 GNB4 ISG15 TCEA3 MYO5B SEL1L RHOJ CYBB RPL29 DUOX2 CD53 GTF3C4 DHRS11
84 CKAP4 AHCY XDH SMC1A CKAP4 HLF RARRES3 RTN1 CLTB AC022144.1 TGOLN2 UBE2J1 JCAD C1orf162 RPL13 PAPSS2 EIF1 HELLS MT1M
85 F3 HACD3 FUCA1 PUM3 ARFGEF3 ITM2A LRRC1 HLA-DQA1 ITM2C GLUL LLGL2 EVI2B MYCT1 PDGFC TNFAIP8 BCL2L15 LCK CDT1 ZBTB7B
86 S100P FOXQ1 TSC22D1 ESF1 SLC39A7 MSN MIER3 BCAT1 APPL2 PKP2 HUWE1 CHST15 GJC1 CCL18 RPL9 GLUL RPL21 RFC2 MT2A
87 SLC18A1 PGRMC1 ITPKA PURB ACSS2 RUNX3 SMPD1 ITGB2 S100A10 CKMT1B MKI67 ST6GAL1 VEGFC HLA-DMB RPL23A CHCHD10 JUNB QPRT TSC22D1
88 PTPRN2 SOX9 AKR1B10 EIF5B FOXA3 CHRM3-AS2 TJP3 SAMSN1 MGLL TMEM45B SNRPD2 HSP90B1 WWTR1 C5AR1 RPL10A SNORC RASGRP1 PMEPA1 CLTB
89 FAM174B GTF3A SMIM22 IER5L KLF4 ARL4C RHOC THEMIS2 CDHR2 CD9 GSE1 SPCS1 PGF CD300LF RPL19 TRABD2A CTLA4 EPHB2 TMPRSS2
90 XBP1 DMAC1 CLTB VEGFA CANT1 CREM DSC2 MARCH1 PTPRH S100A10 FASN CREB3L2 RBMS3 NCF2 AL139020.1 CKB SKAP1 MET S100A10
91 HDLBP MTCH2 IGSF9 TRIM28 TRPM4 GYPC SAMD9 CD1E TMEM236 NFIA PERP ALG5 PTPRM PMP22 TAGAP SLC4A4 RPL29 NTMT1 DSC2
92 RABAC1 RPL24 TJP3 SLC25A25-AS1 SLC39A11 CD53 IFI27 GPR183 ENTPD8 MLEC LGALS3BP C16orf54 MPDZ RGS18 RPL18 RNF186 CD6 POLDIP2 BLOC1S1
93 PRIMPOL ZIC5 MEP1A ATRX QSOX1 CCR6 C1QTNF12 LRRK2 CCDC68 S100A16 HES1 CLPTM1L SULF1 SIGLEC12 HLA-DMB CCL28 RPL37 IPO7 PPDPF
94 TPM1 GAPDH TSPAN8 MPHOSPH8 CREB3L4 TOX2 SERINC2 MS4A4A RARRES3 B3GALT1 PSTPIP2 DENND5B CTHRC1 AKR1B1 NR4A2 SLC44A4 FXYD5 E2F8 CYP3A5
95 TM9SF3 LYRM4 LINC01133 LLGL2 CBFA2T3 STK17B BTNL3 CD163 RFK MECOM RPS15 IGHA1 SHANK3 SLC7A7 RPLP2 MYB RPL19 CENPF IVNS1ABP
96 CD63 SSB CD14 BAZ1B GFPT1 CD8A SIRT6 CEACAM4 FBXO32 EPCAM PRRC2B IGHV3-30 HECW2 CD4 EEF1B2 RARRES1 RPL13 NPTX2 EFNA1
97 AQP3 EIF1AX TFCP2L1 KPNA2 AQP3 SYTL3 MEP1A LCP2 DSC2 NEO1 SLC12A2 CD79B FAP COLEC12 LY9 S100A10 RPL32 CHTF18 SFN
98 TBX10 NME1 ABCA5 HMGB2 HPCAL1 PRKCQ TMEM45B ADAM8 VAMP8 ATP5F1C PSMA7 ITGB7 LIMS2 HSD17B14 HLA-DOB ATP10B ZFP36L2 HUWE1 DST
99 SPINK1 SMS EDN3 DPYSL3 TC2N PBXIP1 LINC02023 HLA-DRB1 EMP1 GJB2 FTSJ3 NUCB2 FAM171B CSTA HLA-DQA2 MTUS1 LCP1 MCM2
100 SLC39A7 PGK1 CHP2 HES1 GMDS JAML UGP2 AC020656.1 SULT1A2 SMIM24 BRD3 IGHG1 LIFR ACP5 RPL10 GAS6 TRGC2 LAS1L

separation of epithelial, stromal and immune cells

Cell split