knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p009ot2

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p009ot2"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p009ot2.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 8707 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 5976 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 3 4 5 6 7 8 9
1 HSPE1 RPS12 MMP7 CXCL14 NOTUM LGALS3 CEACAM7 LCN15 HIST1H1B HIST1H4C CXCL1 SLC26A3 S100A4 SLPI BASP1 GAL NPM1 LCN2 FABP1 HIST1H1B E2F1 NDUFA4L2 HIST1H1B
2 HSPD1 RPL6 KRT17 MMP7 WNT6 TFF3 SLC26A3 LDHA HIST1H3B HIST1H1B CXCL2 SDCBP2 RPS14 CARD16 RPS23 FABP5 HMGB1 CLDN2 LCN15 HIST1H4C FAM111B NDRG1 HIST1H4C
3 PTGES3 ASCL2 KRT6A PI3 CA6 S100A4 SDCBP2 NDUFA4L2 HIST1H1E UBE2C CCL20 FABP1 RPL37 PADI2 DMKN HSPE1 DTYMK LYZ CKB HIST1H1C CDT1 PLOD2 HIST2H2AC
4 HSP90AA1 KRT80 S100A4 CST1 NDUFA4L2 REN ENO1 HIST1H1D TOP2A CXCL3 FXYD3 RPS23 CCL28 TMPRSS11E MAD2L1 TK1 SNORC TFF3 HIST2H2AC CDCA7 FABP1 FABP1
5 RAN IFI27 TXNIP DKK4 PHGR1 CEACAM5 FAM162A HIST2H2AC HMGB2 CXCL8 REN PI3 TSPAN1 SLC2A1 HSPD1 CLSPN COL11A2 LDHA H2AFZ PCNA CKB LCN15
6 HMGB1 HLA-B KRT6B REG3A TSPAN1 PSCA TPI1 HIST1H1C MKI67 NFKBIA NAT8 RACK1 PRDX5 PDLIM4 PNO1 H2AFZ COL9A3 LGALS4 UBE2C BRCA2 PCK1 HIST1H1E
7 TUBA1B PERP COL9A3 PTPRO FTH1 LINC00520 PGK1 HIST1H4C TUBA1B TNFAIP3 TSPAN1 PDLIM1 PI3 KRT23 RAN FADS1 S100A1 PCCA TUBA1B MCM10 MIR210HG HIST1H1C
8 HSP90AB1 MAP2 WFDC2 PRSS56 KRT19 CDKN2B GAPDH FBXO5 PLK1 IER3 ADIRF C9orf16 S100A4 AKAP12 CDC20 PTMA TESC GPA33 HMGB2 MCM6 INSIG1 UBE2T
9 PSMA4 PMEPA1 IFI27 APCDD1 SCD EMP1 CKB CLSPN TUBB AREG KRT8 RPL28 PHGR1 VSNL1 PTGES3 PTTG1 CD63 C10orf99 TUBB XRCC2 LGALS4 MKI67
10 SET S100A11 LCN2 SERPINI1 SORL1 FXYD3 NXPH4 ATAD2 BIRC5 NFKBIZ CD24 SLPI MUC12 FLNA SRPK1 PPP1R14B RNASE1 PIGZ TOP2A GINS2 KRT19 CDK1
11 NCL MSLN PDLIM1 MUCL1 ETHE1 LYPD3 PCSK9 HIST1H2AM EIF4EBP1 SDC4 CEACAM7 RPS3 TFF2 RPS14 BIRC5 PCNA CXCL14 FAM162A HIST1H1E HELLS FDFT1 UBE2C
12 SNRPF DCBLD2 LEMD1 MAP1B LGALS4 ABCG1 IGFBP2 HIST1H2AG PTMA NCOA7 NEAT1 PRDX5 TNNC1 RPL37 XRCC2 CCT5 TPT1 CCND2 HIST1H2AJ MCM4 LCN15 CKB
13 EIF4EBP1 PI3 HLA-A TRDC RNF186 SPRR3 FDFT1 HIST1H2AJ H2AFZ TM4SF1 LGALS4 GUK1 FAM155A ANXA1 DBI CENPK PDZK1IP1 FDFT1 MKI67 CLSPN LDHA DBI
14 SRSF7 CXCL1 LAMP1 CCND2 FXYD3 SMIM5 NDRG1 E2F8 CDK1 CLDN4 PHGR1 COMMD6 LGALS3 IL18 CCNB1 GINS2 SLC44A4 AGR2 CDK1 ATAD5 SCD LDHA
15 ODC1 LAMB3 TUBA1A INHBB RPS14 HSPB1 DDIT4 PCNA HMGB1 TNFRSF12A LGALS3 IFI27 SDCBP2 GPC1 HSP90AA1 TUBA1B SH3BGRL PHLDA2 HIST1H2AM CDC6 PGK1 TOP2A
16 PSMB1 ANXA3 COL6A1 CYP4X1 TMEM45B DHRS9 SCD TYMS HIST1H1E EREG ANXA4 PHGR1 HSD11B2 RPS25 ATP2C2 TFDP1 FAM3D ANXA4 HMGB1 ORC6 ACSS2 PCNA
17 PTTG1 MAP1B HLA-C NELL2 PRDX5 SCEL PIGZ HIST1H2AH ANAPC11 JUNB AL365226.2 ABLIM1 PDLIM1 PKIB PTMA MKI67 MAGED2 FABP5 BIRC5 MSH6 FXYD3 ASF1B
18 SNRPB IL18 C9orf16 FGF20 ABLIM1 TSPAN1 SHMT2 ESCO2 HJURP ATF3 PDZK1IP1 LAMP1 IFI27 MMP7 HMGB1 HELLS CEMIP CD24 EIF4EBP1 HSPD1 EGLN3 HMGB2
19 HMGB3 GSN CADM1 PROX1 CSTB UNC5B INSIG1 BLM TUBB4B TNFSF15 SH3BGRL3 EEF1A1 RNF186 RACK1 HPDL TUBB CAPS AKR1C3 UBE2T RIF1 TFF3 HJURP
20 CCNB2 ANXA1 GPC1 NKD1 S100A14 TIMP2 MSMO1 PRIM1 CKS2 VMP1 SLC22A18AS MALAT1 FTH1 CNN3 CNBP FAM111B AGR2 CDX2 SMC4 MCM3 KRT20 PTMA
21 NUCKS1 LINC00520 TMEM59 FGF19 PDLIM1 UPK2 AGR2 GINS2 CBX5 JUN DHRS9 RPS25 DUSP1 ANXA2 MCM10 PRELID1 ISG20 NCAPG BRI3BP NXPH4 MCM7
22 CENPF CCDC9B TMSB4X GPR155 HLA-DRB1 DUOX2 FGFBP1 HELLS UBE2S ELF3 CEACAM6 TXNIP HLA-DRB1 TMEM123 SNRPF PPM1G ZKSCAN1 DNMT1 GMNN C4orf3 TK1
23 H2AFZ SQSTM1 SOX9 ADRA2C NEAT1 SELENOP HMGCS1 RAD51AP1 PFN1 PHLDA1 KRT18 ALKBH7 COX5B ETF1 TUBA1B TOMM40 CDK6 GINS2 ATAD2 AGR2 PBK
24 BIRC5 GPC1 KRT13 DEFA5 PDLIM4 PKIB MIR210HG MCM4 SIVA1 MYC CDH17 EPB41L4A-AS1 NEAT1 PERP HSF2 GTF3A SELENBP1 RRM1 RFC4 TRIB3 H2AFZ
25 TESC HLA-A IFI6 AC036222.1 ELF3 HIST1H2AC FDPS UBE2T TPX2 PTTG1 S100A6 NDUFA2 SELENBP1 KLK6 PA2G4 SSRP1 HDAC2 TPX2 SLBP MSMO1 TPI1
26 CENPW GUK1 PERP CEL ALDH18A1 FTH1 C4orf3 CDT1 HIST1H1C TSPAN8 MSX2 SEMA5A UCA1 DDX39A HNRNPAB IGFBP2 PRKDC UNG MVD HIST1H2AM
27 MLEC ANXA2 ID1 DPEP1 SLPI TP53INP2 TRIB3 FANCI SNRPG KRT20 SNHG18 C10orf99 VDAC1 ALDH1B1 KIF20B USH1C MYBL2 RRM1 HMGCS1 CDC45
28 C1QBP CXCL8 MALAT1 BAMBI DDIT4 LAMB3 CAPS CDC6 RANBP1 TFF3 PCCA CYP4F12 TMSB10 SRSF7 CENPH QPCT FANCI HMGB1 FDPS ZWINT
29 HDAC2 TRIM29 GSN GAD1 GUK1 ADIRF CDX2 RRM1 MZT2B AKR1C3 MVP MALAT1 TMEM47 GMNN RFC4 TALDO1 WDR34 NOP56 FAM162A CENPU
30 LYZ HSPB1 SLPI PTK7 ACAA2 MUC12 ACSL3 USP1 LSM2 GDPD3 CLRN3 MVP TGFBI SMC2 NMU LEMD1 RANBP1 RAD51AP1 PTPRR TUBB
31 ANP32B COL6A1 COMMD6 SP5 PCCA LAMA3 P4HA1 DNMT1 KPNA2 PKIB TGFBI C9orf16 MSX2 AEN BTF3 APCDD1 ZWINT EIF5B GBE1 FABP5
32 CCT6A CXCL3 TGFBI TDO2 MIR210HG DUSP5 SQLE CDC45 NOP56 TRIM31 ATP6V0E1 AREG LYAR ARF1 TUBA1A RAN SMC2 DDIT4 GMNN
33 RAD21 TNFRSF12A GSTP1 SKAP1 TFF2 FBXO32 RFC4 CENPX EMP1 COL16A1 SLC7A11 LDHB GSTO1 TSPO KIFC1 TUBA1B IDI1 NCAPG
34 EIF5A TIMP2 GUK1 ITPR2 ITM2C NEAT1 MCM7 UQCC2 DUOXA2 COL17A1 ACTN4 SAPCD2 NDUFS6 MGAT5 PLK1 FABP5 PIGZ ACAT2
35 SRSF3 JUP TTYH1 TNFRSF11B FABP1 C17orf67 UNG SNRPB PYCARD PPP1R14D FSCN1 CCT2 LMNB1 PCSK1N DEK MCM5 HSD17B12 PCSK9
36 CCNB1 RHOC MGLL NANOS1 CLIC3 TFF1 ZWINT SNRNP25 PPP1R14D SNHG18 EREG DEK RFC2 MGLL HJURP CTNNAL1 RNF186 TYMS
37 CNBP KLK7 RNASE1 SEMA3A FOS GABARAPL1 HMGB2 H2AFX ETHE1 TMEM59 DCBLD2 EIF5B UBE2S NBDY ANLN DNMT1 ADM TUBA1B
38 DKC1 EDN1 SSR4 CST7 C4orf3 CEACAM6 FAM111B PCBP2 LIMA1 GDPD3 LARP1 TMPO MT2A QSOX1 TMPO MCM7 GAPDH FBXO5
39 CDC20 PDLIM1 S100A11 PTCH1 ALKBH7 BHLHE40 CENPU FBL KRT19 FOS S100A11 SNRPA1 SAC3D1 IFI6 HIST1H1D CENPU PCSK9 ANLN
40 CCT2 KRT6B MSLN SLC7A8 DUSP1 RHOC TUBB H1FX CYP4F2 LGALS4 HINT1 BRCA2 SNRNP25 BACE2 CCNF SRSF7 MEP1A HIST1H3B
41 HNRNPD HES4 CLRN3 SLC1A5 PRAP1 PADI2 RFC2 CENPF SLC44A4 CDHR5 CCND1 SURF6 RANBP1 PHLDA1 SNRNP25 NASP LINC01559 TPX2
42 RANBP1 HLA-C SEMA3B ABCB1 SDCBP2 KRT80 BRCA2 RBM8A ACE2 IL18 EID1 MRPS26 HSPB11 DST SMC1A H2AFZ PRUNE2 DEK
43 MRPL51 RRAS ITM2B KRTAP3-1 MXI1 SYNPO MCM3 AURKB PHLDA2 GUK1 SRPRA JPT1 CHEK1 ASCL2 PTMA HSP90AA1 ACAT2 RANBP1
44 TCP1 KRT23 SKP1 TUBA1A RACK1 TM4SF1 PBK RAD23A PRR15 S100A14 YBX3 RANBP1 MCM7 PIGR PAXX HSPE1 TPI1 HIST1H1D
45 SNRPG AREG APCDD1 PRR9 KLK10 DUSP1 SMC4 TMEM106C GPR160 ZBTB7C TBCA TRIAP1 DRAP1 TK1 PSMG1 P4HA1 TUBB4B
46 SNRPA1 PDGFA PLEKHB1 SOX4 TNNC1 SH3BGRL3 ATAD5 SMC4 PIGR HLA-A PTMS MSH6 SMC3 H2AFX GAL ANXA4 SPC25
47 CBX5 IFI6 COL11A2 RAB30 BHLHE41 TMBIM1 GMNN WDR34 MAOA CD82 NUDCD2 PSMA4 MCM3 SIVA1 ANP32B REN KIF4A
48 LSM5 KLK10 EEF1A1 CRABP2 IFI27 CLDN4 CDK1 CENPW TST RHOU MYO10 ECT2 H2AFX PCNA ODC1 NEAT1 ATAD2
49 HNRNPA2B1 SLPI MSX2 LEF1 PGK1 HIST1H2BD NCAPG PTBP1 CIB1 HSPB1 S100A6 NUP37 MRPL11 ODC1 GMPS DBI HMGB1
50 MAD2L1 S100A4 ATP6V0E1 CLU CALB1 SERPINA1 H2AFZ RABL6 FABP2 SULT2B1 EIF3E TPX2 CENPM RAD51AP1 HNRNPM FASN MAD2L1
51 HNRNPH3 C6orf15 PPIC HEPHL1 DSC2 CPEB4 BRIP1 ALYREF DUOX2 AOC1 AC104823.1 TWISTNB EI24 BRCA2 CENPW ACSL3 RASL11A
52 TMEM106C UPK2 CNN3 DACH1 GSN CDHR5 BRCA1 CDK4 C10orf99 CRYL1 RDX HACD3 LIG1 NOP56 CCT6A HMGCR BIRC5
53 HNRNPA3 SDCBP2 GRN MAN1A1 TXNIP IFI27 DIAPH3 NCAPD2 IFI27 SORL1 MAN1A1 HNRNPD NHP2 MCM7 SRSF2 RBCK1 MYBL2
54 PRMT1 WFDC2 RPS27 TSPAN5 FADS2 FHL2 MSH2 UBE2T AMN CAMK2N1 S100A13 SYNCRIP ACTG1 SET DKC1 TPT1 FDFT1
55 STRAP HEPHL1 PSAP CALY SLC22A18 GPRC5A DSCC1 ECT2 DGAT1 MGLL GALNT10 EIF2B1 CDKN3 GMNN SET LPIN1 CLSPN
56 PRKDC ATP6V0E1 CST3 PAM MVP CLCA4 HIST1H3G AURKA NDRG1 TMEM45B RPL26L1 EIF4G2 HMGB2 AURKA SMC4 CYP4F2 FANCI
57 SSB MUC12 ANXA3 PCSK1N NDRG1 PPP1R14D MYBL2 VAMP8 PRAP1 ATOX1 EBNA1BP2 CCNB1 HSPE1 NOP58 SQLE RRM1
58 SEPT7 CCND1 GAS6 SYK EMP1 TMEM45B TUBA1B MEP1A ALDH18A1 CCDC85B SNRPB NASP TUBB4B PTGES3 C6orf223 PLK1
59 PLCB4 KLK6 JUN RAMP1 MALAT1 PHGR1 CIP2A S100A14 HLA-DQB1 ENY2 CDT1 H2AFY CENPF SMC6 FAM13A CARHSP1
60 SMC2 KRTAP3-1 MAGED2 ENTPD8 TMEM59 YPEL3 MKI67 MVP ETHE1 RPS20 SNRNP25 BIRC5 CBX5 PRKDC ACSF3 NCAPH
61 HNRNPA1 TAGLN CAMK2N1 BMP4 HSD11B2 PTPRR EIF4EBP1 CD68 TXNIP CLU HNRNPAB TYMS SNRPB PSIP1 ACSL1 SHMT2
62 CXCR4 S100A6 TACSTD2 EMB C10orf99 LINC01559 EZH2 CA12 HLA-E SF3B5 ARHGAP11A CDC20 KIF11 PGP POLM CDT1
63 HNRNPM GJB4 NME3 TUBB2B NRN1 LY6G6C CHAF1A RHOF SLC22A18AS S100A10 DDX51 PSMB9 SNRPF CCT2 EBP RAD51AP1
64 ETS2 CLDN4 FKBP2 TGFBI CAPG SNCG MCM6 AOC1 SMIM22 EZR TACC3 SLC25A5 UBE2S POLR3K TRIM31 KIFC1
65 HNRNPU BASP1 RHOC SCG5 VDAC1 LANCL3 MND1 MALAT1 LAMP1 TNFRSF11B POLR2H PDLIM1 TMEM106C MAD2L1 ECH1 GINS2
66 FABP5 FOXQ1 CXCL16 NPB LINC00483 PRSS22 POLA1 SRPX2 ESRRA CPNE3 PHF5A HMBS SNRPG LYAR QPRT WDR34
67 CKAP4 CD55 SLC12A2 CAB39L TMPRSS4 HIST1H4H BARD1 TMBIM1 FOLR1 MET HMGA2 CEP55 HSPD1 USP1 TMCC1 CCNA2
68 TFAM LEMD1 APP FAM107B SH3BGRL3 AHNAK2 FOXM1 TIMP1 KLK11 AC103702.2 BRI3BP MRPL36 AURKB ZMYND19 CD24 ENO1
69 SYNCRIP MYOF KLK6 MGAT5 ST14 PMEPA1 ORC6 CDHR5 KIZ MRPL51 NOP56 CDT1 BRI3BP EIF4EBP1 CSTB SMC4
70 LYAR NEAT1 NDFIP1 KLK1 IGBP1 MGLL H2AFX RAB32 SH3BGRL3 UBXN2A IMP4 UBE2T CENPW NCL ANKRD37 BRI3BP
71 HNRNPDL ISG15 ATP6AP1 GRN CLDN4 C6orf222 PSIP1 ASL CLTB UQCRB ODC1 BRCA2 ECT2 RAN FGFBP1 SNRNP25
72 TPX2 C9orf16 ALKBH7 SESN3 PI3 CD24 NCAPH PCCA HLA-C APLP2 PAK1IP1 TUBB4B NCAPD2 PSMA4 ELF3 NUSAP1
73 PHLDA1 DUSP1 SEZ6L2 TNFRSF19 SLC2A1 KRT20 ASF1B PRDX5 KRT8 BEX3 SET ATP1B3 PBK PAICS S100A14 PGK1
74 CENPE TXNIP SYNE2 PRSS22 PRSS3 DUOXA2 TK1 ARPC3 GRN NKD1 POLE4 DCTPP1 CDCA2 SRSF3 GPR160 FDPS
75 ETV4 TUBA1A DST OXR1 LAMP1 UBC NASP HRCT1 TMSB4X SCAMP1 MIS18A NUSAP1 FABP5 CENPN ERO1A BRCA2
76 NDUFAF4 TMSB4X TMED9 ABHD2 HSPB1 SLPI RANBP1 SORL1 FXYD3 HMGN3 PTTG1 ANP32B CMSS1 CACYBP PKM FASN
77 PHGDH CXCL2 TMEM179B KCNQ1OT1 PPP1R1B DSC2 DUT LINC01559 PCSK7 PPP1R2 HMMR ISOC1 POLR3K SNRPF VIL1 SIVA1
78 ECT2 IER3 MBNL2 KRT23 AOC1 S100P CTNNAL1 MPST ECHS1 TXNIP GAR1 WDR34 NUCKS1 SRPK1 CD9 USP1
79 ILF2 UBC APLP2 PTMS LCN15 C11orf86 HMGB1 SULT2B1 GGH CAMLG CDC6 MYBL2 CKS2 HACD3 LRP1 PGP
80 CHPT1 MALAT1 MUC13 RCN1 CAMK2N1 VILL LIG1 CCND2 PCCA MSI2 MRPS23 SRSF3 NCL WDR43 ITM2C IDI1
81 ATP2B1 SDC4 GJB1 CST3 EGLN3 CD55 SRSF3 SLC22A18 TCTN3 ID4 SERBP1 TUBG1 ALYREF CCDC137 LGALS3 CENPW
82 NASP PDP1 QSOX1 EID1 KRT20 CAMK2N1 MELK CRYL1 SEMG1 MRPL55 SRSF3 NPTX2 PSMC3 TCP1 ENO1 MCM6
83 H2AFV RHOD MYOF DNAJC15 GDPD3 CLIC3 SET ABCB1 MYO1D REXO2 ANP32E TMED9 CENPM PM20D2 KRT8 AURKB
84 VBP1 TGFBI UCA1 C6orf15 SMIM22 HLA-DRB1 CDCA7 SLC40A1 ELF3 HSPA4 BAZ1A CENPU CENPU CCDC34 INSIG2 TDP2
85 TUBB4B S100A10 LITAF BEX3 FAM3B SQSTM1 E2F1 TJP3 GSN BCL2L1 RRM1 DDX39A KPNA2 CFTR ACAA2 FADS1
86 HSPH1 GABARAPL1 DUSP1 WFS1 TJP3 AOC1 NCAPG2 ATP1B1 POF1B RNASE1 ORC6 SRSF7 CTNNAL1 SNRNP25 C10orf99 ITGB3BP
87 SMC4 TACSTD2 EPB41L4A-AS1 CD63 EFHD2 SLC6A8 WDHD1 PCK1 TOB1 SERPINE2 HSP90AB1 MRPL55 HELLS CDK4 MIF TMEM97
88 FARP1 CXCL16 TRAPPC6A DBN1 PRR15L NEU1 WDR34 ISG20 ARL14 ACBD3 TTK CCDC85B MAD2L1 RANBP1 SLC25A1 NXPH4
89 HMGB2 BIRC3 TSC22D1 PHLDB2 EGR1 EPS8L1 DEK ORMDL2 SSR4 KRT13 PBK NME1 NAP1L4 SUPT16H PRR15 H2AFX
90 ZFP36L2 GRN BTG2 ASPSCR1 NDUFS4 MALAT1 PRKDC ALDH2 HIST3H2A EXOSC4 SAE1 GMNN H1FX BAZ1B SLC22A18 TMEM141
91 SFPQ PNPLA2 ARGLU1 CD163L1 VEGFA GGH CCNA2 PIGZ HIST1H2AC GGH DKC1 SFN PPM1G TOMM40 VEGFA TUBG1
92 LAMP1 SLC2A1 CENPX KRT8 ABCB1 TMPO CCDC170 ATP10B MACF1 TUBA4A BUB3 MCM3 SYNCRIP PDLIM4 SMC2
93 LIPH ID3 FCGRT PPP1R14D S100A14 PTGES3 S100P VAMP8 RARRES2 TUBB4B ASF1B HMGB3 UTP20 ACOT13 AURKA
94 FTH1 CCND1 PRCP LDHA IDS SIVA1 EFHD2 CORO1B SUPT4H1 RPP25 RPA3 CCNA2 HNRNPA2B1 TDP2 KIF20B
95 CLU RHOB SSR4 ATP6V0E1 EREG SMC2 SRI COMMD6 RBP2 KIF20B CYCS ANP32B HMGB3 LIMA1 RFC2
96 TMEM59 CXCL3 UTRN SLC44A4 SCNN1A CBX5 RBP2 AIP H2AFZ ZWINT FOXM1 HNRNPDL AACS EBP
97 EMP1 CHMP4C KIZ P4HA2 TMPRSS4 RMI1 GPRC5A ACAA1 CHORDC1 SNRPB CDK4 PA2G4 LINC00483 PGAM1
98 PSMB9 ID4 MAP2K6 LEMD1 AREG TACC1 PRSS3 CLIC3 HEATR1 ODC1 CDCA8 HNRNPD WNK4 ORC6
99 SEMA3B NEDD9 PSAP SLC6A8 GSN TOP2A SQOR MIR194-2HG EEA1 SNRPD1 CENPX ESF1 AKR1C3 CKS2
100 CST3 ID2 IFITM3 SRI RRAS PPM1G ABHD2 CTSA EBPL RNASEH2C PTGES3 PRPF4B PDK1 UBE2S

separation of epithelial, stromal and immune cells

Cell split