knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p009n2

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p009n2"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p009n2.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 5834 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3997 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 24 25 3 4 5 6 7 8 9
1 LEFTY1 AQP8 OTOP2 LEFTY1 TBX10 SELENBP1 AQP8 SELENBP1 SELENBP1 SLC26A2 AQP8 TMIGD1 ITLN1 ANXA13 CDKN2B-AS1 FER1L6 HPGDS DCN MYH11 CFTR IL7R IGHA2 BEST4 CLCA1 CDC42EP3 HLA-DRA
2 RARRES2 CLCA4 BEST4 PTPRO AC093277.1 SLC26A2 TMIGD1 GPX2 CA1 MT1M CLCA4 AQP8 CLCA1 IGFBP2 FABP1 TFF1 BMX LUM MYL9 LEFTY1 KLRB1 MZB1 CA7 ITLN1 FER1L6 CXCR4
3 PRAC1 TMIGD1 PCSK1N CDCA7 CDC42EP3 CA1 CLCA4 CHCHD10 CA2 PI3 SLC26A3 C11orf86 KLK1 GALNT8 PHGR1 AQP8 HCK COL1A2 C11orf96 NXPE1 CD3D TNFRSF17 OTOP2 ANO7 MUC2 HLA-DPB1
4 TXN SLC26A3 MYOM1 ADH1C FER1L6 ID1 ANPEP PIGR SLC26A2 FABP1 SGK1 CA4 REP15 FRZB KRT19 MINPP1 PTGS1 IGFBP6 RERGL CLUH CD2 DERL3 SPIB REP15 GPR153 CD52
5 GPX2 CEACAM7 CA7 EBPL TPSG1 AK1 SLC51B JUN CD24 PHGR1 MS4A12 CDA IL1R2 CACNA2D2 KRT8 PRAP1 SH2D7 FBLN1 CALD1 PAXBP1 TRBC2 FKBP11 DMBT1 ST6GALNAC1 TFF1 CD37
6 PPP1R1B MS4A12 OTOP3 C1QBP S100P CD24 CA4 HEXIM1 GPX2 CA1 ANPEP SLC51B ST6GALNAC1 L1TD1 LGALS3 TRIM31 HTR3E SFRP1 MCAM ILF3 FYB1 IGKJ5 UNC5C SPINK4 ZG16 HLA-DPA1
7 TRABD2A ANPEP SPIB IMPDH2 RAB3B HSD11B2 SLC26A3 ELF3 MT1X MT2A LINC02023 PRAP1 BEST2 AC005833.1 ETHE1 C11orf86 B4GALNT4 FN1 PLN ATP2C2 CD3G EVI2B PROX1 OR8D4 GSN HLA-DRB1
8 TMSB10 CDA HES4 RARRES2 TFF1 CKB MDK AL137077.2 LGALS2 KRT19 TMIGD1 CYP3A4 SERPINA1 FMOD PI3 TBX10 OGDHL SFRP2 IGFBP5 PNN HCST SLAMF7 ADCY5 KLK1 FCGBP IGHM
9 MLEC TRPM6 MEIS1 AQP1 REP15 CA2 SELENOP ATP5MC3 ID1 CD14 CEACAM7 ANPEP WFDC2 OR8D4 SLC51B CLCA4 TRPM5 CCDC80 SNCG PRKAG2 CD3E IRF4 ADRA2A RAP1GAP MLPH MS4A1
10 PRDX5 SELENOP DMBT1 HACD3 TUBB2A PLCE1 C11orf86 CA1 ADIRF CEACAM7 MUC12 CIDEC SPINK4 SPINK4 KRT20 RAB3B GNG13 COL3A1 CSRP2 NXPE4 TRBC1 POU2AF1 HES4 SERPINA1 REP15 CD79A
11 RPS24 ISG15 SLC2A5 ALDH1B1 FAXDC2 NBEAL1 MS4A12 ID1 CKB MT1H SELENOP TRIM31 TFF3 MB MS4A12 TUBB2A COL27A1 TIMP3 LMOD1 UGT2A3 CD7 TNFRSF18 MEIS1 FCGBP TBX10 LTB
12 RPS2 EMP1 ADRA2A ASCL2 GPR153 B3GALT5 CIDEC TXN HSD11B2 MUC12 CDHR5 CCDC152 FCGBP WFDC2 CD14 SYTL5 SH2D6 C1R RCAN2 AHI1 TRAC GNG7 NOTCH2 SLC12A2 RAB3B IGHD
13 RPS18 SLC51B CTSE EPHB2 MLPH SLC4A4 TMEM37 LGALS2 MT1G MS4A12 PDE9A MDK MUC2 CA8 MT1M CDC42EP3 PSTPIP2 SPARCL1 CAVIN1 SYNE2 GIMAP7 KLHL6 PCSK1N SLC4A7 RASEF VPREB3
14 RPLP0 ABCG2 ADCY5 LMNB1 FOXA3 TP53I3 RARRES3 CKB MT1M MT1E ABCG2 MS4A12 TPSG1 RAB15 TMEM54 SELENOP AZGP1 ADH1B ACTG2 BDP1 GIMAP4 FCRL5 CEACAM3 WFDC2 S100P CD83
15 PIGR SGK1 C2orf54 BEX3 CAPN9 PCLO GUCA2B CA2 KRT19 SCNN1B SLC17A4 EMP1 AGR2 KIAA1324 LGALS4 CDA RGS13 COL6A2 TNS1 AC103702.2 CST7 MEI1 SLC2A5 RAB26 B3GNT6 LAPTM5
16 SPINK1 TMEM37 DOCK4 HSPD1 RAB27A CES2 TRPM6 TMSB10 UGT2A3 CDKN2B-AS1 EMP1 CLCA4 RAP1GAP ITLN1 PRDX6 ANPEP FYB1 PLAC9 NOTCH3 PLCE1 TXK CCR10 CTSE TFF3 SYTL2 TCL1A
17 RPS6 GUCA2A CA4 RNF186 FAM177B MIR194-2HG TRIM31 CYBA CHCHD10 SLC26A3 PLAC8 RARRES3 SPDEF AP003774.4 S100A6 MUC2 CSF1R COL14A1 CRYAB MKI67 CD247 SPAG4 NEURL1 HEPACAM2 TFF3 BANK1
18 B3GNT7 CA4 PRKG2 MRPL11 MUC2 HES1 CEACAM7 NDUFS6 PLCE1 ETHE1 TRIM31 ABCG2 SLC12A2 SLC12A2 CEACAM7 ZG16 CLEC7A COL6A1 MAP1B IRF2BP2 CXCR4 TNFRSF4 NBPF19 ITPR2 TPM1 TNFRSF13C
19 RPL35 HIST1H1C CCNYL1 APEX1 RFLNA ISG15 C10orf99 SPINK5 KRT8 ISG15 HPGD ANO7 KLK1 TMIGD1 LINC01559 IGSF21 C1S SERPINI1 ABR PTPRC AC104699.1 LUZP2 IGFBP2 MINPP1 HLA-DQB1
20 CFTR TRIM31 FRMD1 FBL B3GNT6 CDA COX5B C10orf99 C3orf85 RHOU SELENOP FRZB SPINK1 GIPC1 TMIGD1 MS4A6A FBN1 SYNPO2 CENPF CD96 NUGGC CDK18 ERN2 TUBB2A CD79B
21 UGT2A3 PLAC8 MT1H PAICS SYTL5 PKIB MT1G ATP5MC3 CEACAM1 ABCB1 TMEM37 ATOH1 RAMP1 FXYD3 SMPDL3A CD163 SPARC ATP1A2 SOX4 CD69 IGF1 SLC2A6 SYTL2 BCAS1 HLA-DQA1
22 RPL37A ABCB1 CDK18 PPP1R1B MINPP1 FTH1 ELOB TXN SLC51B TRPM6 SLC26A3 HEPACAM2 CHDH S100A10 GSN GFRA2 COL6A3 CNN1 HES1 SPOCK2 SPINK2 CCND1 HPCAL1 TPSG1 HLA-DQA2
23 RPL8 PRAP1 NEURL1 NOS2 RASEF SLC6A19 UQCRQ PYCARD GLDN MIR194-2HG SMPDL3A FAM3D AP002498.1 MYL6 SLC26A3 LILRB2 SERPING1 CRIP2 FYN LY96 DOCK4 SPDEF FAM177B AFF3
24 RPS19 SLC9A3 CEACAM1 ESD ZG16 GUCA2A IER2 LGALS4 SELENBP1 DST PKIB B3GNT6 TUSC3 MT2A SLC51B LRMP OGN C2orf40 SRGN CD27 FRMD1 FRYL CAPN9 HLA-DRB5
25 ATP5MC1 IFI27 HSD17B2 KRTCAP3 GSN ABCG2 MT1E MT1E XDH CD177 TIMP2 ZG16 ANO1 MT1F AL365226.2 CLEC10A SCARA5 COX4I2 LCK ENAM MT1H MUC4 SYT7 FCER2
26 RPL37 MDK SAMD9L MAD2L1 CREB3L1 HIST1H1C COX6C PIGR KRT20 GPRC5A GUCA2B DNAJC10 SMAD9 TST ISG15 MS4A7 PTN COX7A1 ARL4C AMPD1 AL121929.2 ANXA13 MUC13 LINC02397
27 RPL12 MUC12 UNC5C LAPTM4B HSPA2 CD177 GAPDH HMGCS2 MT1G CYP3A5 FTH1 MLPH HPCAL1 CA2 GUCA2B POU2F3 EFEMP1 SLC7A2 SLA A1BG MT1G KIAA1324 SERPINA1 PAX5
28 RPL31 CD177 C4BPA MLEC IL3RA SGK1 PLCE1 AKR7A3 MT1X C1QTNF12 HSD17B2 RASD1 EPHB3 SLC25A5 RAB27A ALOX5 FBLN2 BGN SCML4 BMP6 CA4 ATOH1 QSOX1 LY86
29 ADH1C HPGD LUZP2 PTGDR MUC1 SLC9A3 CD24 MRPL41 IGSF9 BMP3 CEACAM7 SYTL2 SERPINA1 C2orf88 HPGD HTR3C CFH AKAP12 SLFN5 EAF2 NBPF14 ARFGEF3 RAB27A CD22
30 HSPD1 PDE9A GUCA2A PPP1R14B KLK1 SECTM1 HES1 GPT TMIGD1 COL17A1 ISG15 FMOD ARFGEF3 SGK2 MDK PIK3R5 MMP2 ITGA7 GZMA RRAGD OTOP3 GNE TSPAN1 HLA-DMB
31 RNF186 RARRES3 PROX1 TYMS ATOH1 GPRC5A ATP5ME B3GNT7 AHCYL2 LIPH GUCA2A KRT18 RAP1GAP MUC12 CEACAM7 CD300LF DPT GJA4 GPR171 PRDM1 MYOM1 MLPH GALNT5 MARCH1
32 NUPR1 FABP1 CEACAM6 NPM3 FCGBP IFI27 UQCR11 CD14 C1QTNF12 PDZD3 HIST1H1C RAB27A SLC12A8 SLC26A3 DHRS9 PLCG2 SERPINF1 EFHD1 CD52 LGALS1 C2orf54 NXPE1 SCNN1A FCRL1
33 RPL29 SLC15A1 GUCA2B PRDX3 TFF3 HPGD S100A14 NDUFV1 LGALS3 HPGD PIM1 MB KLK3 SMIM22 CD177 DKK3 TNXB CCDC3 LCP1 CD79A GNPTAB SPINK1 KLK1 FCMR
34 CD24 C1QTNF12 NBPF19 CCT2 SCGB2A1 PRAP1 ATP5F1D CHP2 CA2 MDK SECTM1 ERN2 CBFA2T3 HHLA2 TSPAN1 PIK3CG MRC2 GUCY1A1 CCL5 GYPC GUCY2C AKAP9 ENTPD8 PARP15
35 RPS21 LINC02023 AL121929.2 PRAC1 SPATS2L SMPDL3A COX6B1 ELOB MT1F SLC9A3 SGK1 MUC4 RAB26 MT1H IFI27 RGS18 ABI3BP RBPMS2 NKG7 VIM PDK1 ATP2C2 STXBP5-AS1 SLC2A3
36 RPL36 GPRC5A SDCBP2 UNG SMIM6 HLA-A NRARP C19orf70 GUCA2A CGN PLAC8 XBP1 IFI6 MT1E HLA-A P2RY13 THY1 KCNA5 ARHGDIB SELENOM TTC39B AGR2 SPDEF CD19
37 ATP5ME MEP1A LINGO1 DUT ACOT7 CFDP1 SPINK5 ATP5F1D PRSS12 APPL2 SULT1A2 SPINK1 ST6GALNAC1 ELOB SECTM1 CD209 PCOLCE AOC3 PRF1 CCDC69 HRCT1 GSE1 CREB3L1 CD74
38 RPL32 PKIB TP53INP2 TKT GDPD3 EMP1 NDUFV1 BSG CLCN2 TCF7L2 MYL12B IGFBP2 ATOH1 CA1 MS4A12 GRASP PI16 CASQ2 KLRD1 CREB3L2 PRKG2 FAM3D SYTL5 CD72
39 RPL10A NAALADL1 PTPRR ATP5MC1 SERPINA1 PRSS3 ATP5MC1 UQCRC1 HHLA2 MEP1A GPRC5A KIAA1324 ALDH1A1 PPDPF HIST1H1C IL17RB CALD1 CDH6 ITK SRGN TMEM176A IL1R2 MGLL PTPRC
40 NXPE1 FTH1 SRI GMNN SYTL2 CCDC152 IER3 AL355075.4 SGK2 MISP PPP1R14D TCEA3 GMDS GUCA2A CFDP1 C3AR1 MFAP5 NRIP2 XCL2 IGLV3-1 CEACAM6 WNK4 RFLNA CD69
41 HSPE1 SECTM1 AOC1 SNRPF TPM1 C2orf88 NDUFB7 CYC1 SULT1B1 ATP8A1 KRTAP13-2 ARFGEF3 C19orf48 PLAC8 CA4 MATK TFPI SYNM EVL ICAM2 MT2A NXPE4 FOXA3 LCP1
42 RPS8 CYP3A4 LYPD8 LSM2 SMIM14 TSPAN1 ETFB NXPE4 S100A6 ARL4A ATP1B3 TPM1 CLCA1 DHRS11 REP15 AIF1 NNMT MYOCD LCP2 CHST15 TMSB10 BEST2 SMIM14 POU2F2
43 RPS9 COL17A1 MSLN LDHB TSPAN1 HKDC1 MRPL41 BCL2L15 PRDX6 EPS8L2 C2orf88 NEDD4L PRAC1 AKR1B10 PLAC8 VSIG4 CD248 CSPG4 CYTIP JCHAIN CEACAM1 GALNT12 ACOT7 CCR7
44 UQCRH HLA-A CDHR2 GSTO2 TM4SF5 FABP1 KRT19 COX5B LTK PCK1 FCGRT AC005833.1 HES6 PRSS3 GUCA2A C1QA LHFPL6 GUCY1B1 S100A4 CD48 HSPB1 PRKAG2 CD177 TLR10
45 RPL13 SULT1A2 KRT20 GPX2 QSOX1 ABCB1 MALAT1 NDUFS6 C2orf88 VPS13A RFK TSTA3 RGS10 UQCRQ PKIB FPR3 WISP2 ANGPT1 CD40LG TENT5C SAMHD1 GMDS LGALS9B RNASE6
46 RPL13A CDHR5 SAMD9 MRPL15 MFSD4A TIMP2 CYC1 HSPB1 CKB HLA-A AKAP9 CENPK ITM2C SPATS2L GRK5 CHRDL1 NTRK3 GZMM TIMP1 SULF2 PLCB4 HEPACAM2 CYBB
47 RPLP2 TSPAN1 SLC20A1 HSPE1 BCAS1 MUC12 HSD11B2 CES3 TMEM54 IFI27 SLC39A11 DLL1 ACTB RARRES3 FES SEMA3E EDNRA ETS1 AC104024.1 ECE1 AL390719.2 DST HLA-DMA
48 RPS12 SLC6A19 GPA33 FABP5 SAT1 SDCBP2 MT1X MT2A DHRS11 PRSS3 MCF2L RARRES2 CHP1 LGALS9B CFP CP FHL5 SKAP1 EMP3 CARD16 MCF2L ANKRD36C HLA-DOB
49 PRKAG2 HHLA2 LINC01559 MRPS35 LGALS9B CYP3A5 HMGCS2 QPRT AC092834.1 TSPAN1 HSD11B2 CCND2 COX5B TPSG1 CSTA GNG11 DACT3 IL2RB AC093797.1 SLC20A1 RASD1 FAXDC2 FAM129C
50 IRF2BP2 CIDEC CEACAM7 GGCT NAAA RFK JUNB ID3 BSG SDCBP2 DLL1 SLC36A4 SLC26A2 KRTAP13-2 AVIL VCAN TCF15 CD53 BST2 NAE1 TCEA3 HLA-E BLK
51 RPS29 CCDC152 HRCT1 PA2G4 MUC13 MEP1A TMEM238 SLC4A4 TP53I3 HHLA2 HPCAL1 PTCH1 SLC22A18AS MUC13 MS4A4A ABCA8 GPR20 LINC01871 ALDH1L2 GOLM1 CRACR2B AGR2 HLA-DOA
52 RPL23 CFDP1 SCIN PRPS2 CD63 HHLA2 PPP1R1B NDUFB7 PLAC8 TRPM6 CREB3L1 REP15 CEACAM1 LPIN2 CLEC4E PDGFRA FAM162B HOPX TSC22D3 C1orf21 GPRIN3 SPATS2L RHOH
53 AL355922.2 C11orf86 S100A10 BZW2 TSPAN13 SULT1A2 PYCARD SLPI ELOB PDE9A RAB26 SLC4A7 LGALS2 MXD1 PLEKHB1 CADM3 IP6K3 TSC22D3 IGHA1 KRT19 HSD11B2 BEST2 SMAP2
54 YBX1 MISP NOTCH2 NHP2 MGLL NAALADL1 ADIRF ETHE1 PRR15 CDKN2B-AS1 LGALS4 SPDEF RHOC NAAA TAS1R3 LAMA4 DYNC1I1 TMIGD2 RASGRP3 AOC1 CEP126 VIPR1 RCSD1
55 ATP5MC3 RHOU PPP1R14C RMI2 MLLT3 PDE9A MUC4 MAOA TNNC2 CD177 FRYL SOX9 SRI C1QTNF12 F13A1 CILP ITIH5 TRGC2 SEC11C MT1X AC103702.2 SAT1 GPR18
56 RPL6 APPL2 VIPR1 MYC ERI3 PLAC8 PRDX5 SULT1B1 AKR1B10 C1QTNF12 ESRP1 PRDX5 SFN MEP1A C1QC RSPO3 CAV1 ZAP70 LINC01480 CTSC LUC7L3 KAZALD1 CD53
57 GAPDH AAK1 FXYD3 SNRPD1 FXYD3 LINC01559 LGALS4 UQCRQ FLNB RHOC CAPN9 GLIPR2 AKR1C3 IL22RA1 NCMAP OMD TIMP3 GATA3 MANEA HEPACAM2 DNAJC10 WNK4 CR2
58 RPSA SLC1A1 CARD16 CDK4 CEACAM5 CYP3A4 B3GNT7 ATP5ME SLC22A18AS MXI1 CCNJL EPHB2 CDKN2B SLC6A19 MNDA MFAP4 WTIP ANXA1 FAM30A SCIN NUMA1 GDPD3 ARHGDIB
59 TIMM13 SMPDL3A CDHR5 TRAP1 GALNT5 KRTAP13-2 LINC01970 FABP1 TRPM6 CYP3A5 GNE PPP1R1B MYL12B CDHR2 CD93 ISLR HAPLN2 CD48 TXNDC15 CDHR2 XBP1 DHRS9 FCRLA
60 RPL18A CDHR2 MDK SNRPE SMIM5 LINC02023 UQCR10 PCLO MRPL41 CD68 CDC42EP5 PHLDA1 SULT1B1 TNFSF10 CAMP COL5A1 RBPMS GMFG PRDX4 MT1M GOLGB1 MCF2L SELL
61 SLC25A6 MXI1 ECE1 MRPS33 TSPAN3 FCGRT MAFB KIF1C PLCD3 JPT1 ALDH1A1 RPL36 TSPAN8 SGK1 KIT MXRA8 MRVI1 IKZF1 PIM2 MYO1B KCNQ1OT1 ANO7 LYL1
62 MUC5B PRSS3 TMEM176A RPLP0 HEPACAM2 SLC6A8 GOLM1 ATP5MC1 PRSS3 CFDP1 SLC12A8 TFF3 ACAA2 SDCBP2 TGFBI COL12A1 SRL CD6 MANF NSD2 GALNT5 FSIP2 TCF4
63 RPS23 C2orf88 MISP SUCLG1 FAM3D RHOC PLA2G2A PPARGC1B IL18 MEP1A KSR2 CKAP4 SCNN1B FCGBP AFAP1L2 PCDH7 PDGFRB SIRPG MEF2C DMXL2 D2HGDH IL3RA COL19A1
64 TMEM238 MIR194-2HG ATP1B1 RSL1D1 SPDEF MISP ARGLU1 MUC4 VDR SFN KLF4 CREB3L4 AHCYL2 S100P CPVL NID1 IL17B DUSP2 CSF2RB TMEM176B NEDD4L DISP2 AC004687.1
65 HOXA11-AS LRRC1 CFDP1 EIF3L SDR16C5 C1QTNF12 ATP5F1E AC005837.1 SHROOM1 SLC15A1 WNK4 HEPACAM2 SULT1A2 CEACAM6 STAB1 NEGR1 A2M LAPTM5 CD38 CKB DOPEY2 ID3 LY9
66 MYB LMO7 FTH1 SPINK1 TMEM59 HSD17B2 NDUFB2 HES1 TST TNFSF10 SLC17A9 FIBCD1 CLDN3 ABHD3 C1QB PTGIS ADAMTS1 GIMAP6 LILRB1 ATP1B1 ATP2A3 MUC4 IRF8
67 RPL7 SLC17A4 MT2A PAFAH1B3 SCEL TNFSF10 UQCRC1 MT1F CSTB CDHR2 GPR153 ITPR2 ITPKA SLC9A3 GAS7 MXRA5 SUSD5 TRAT1 UBE2J1 GUCA2A ANKRD18A ATOH1 CD48
68 CHCHD10 TIMP2 PRSS3 FERMT1 HLA-E MYL12B COX4I1 PKM CES2 CREB3L3 SLC9A3R2 IL13RA1 ATP5F1D SMIM31 FCGR3A LINC01082 SPARCL1 PARP8 IFNAR2 VIPR1 NPIPB15 SCGB2A1 CXCR5
69 LCN2 CYP3A5 DSC2 PGAP1 GPRIN2 PIM1 SLPI CLDN8 GIPC1 SERINC2 ITPR2 GDF15 IFI27 SERINC2 ALOX5AP LAMA2 RNF150 THEMIS PECAM1 KRT8 NKTR NEAT1 ADAM28
70 RPL7A SLC6A8 MT1G NDUFAF2 RASD2 MXD1 CES2 TCIM PKIB NAAA DNAJC12 PTTG1 PPP1R14D CYP3A5 ANXA1 THBS2 FLNC CD28 FAM92B GOLIM4 IL13RA1 FAM3D RGS19
71 GSTP1 RHOC MEP1A PHB2 HLA-F HLA-C COX7B GOLM1 SGK1 CLDN3 RNASE1 KCTD12 C1QTNF12 TFF3 AC020656.1 COL1A1 HSPB6 EMB SPCS3 FNIP2 TTC3 VSIG2 SCIMP
72 RPS4X PHGR1 CDA EIF3M SLC16A9 LINC02535 PKM TIMM13 FXYD3 MYL12A TM9SF3 HOXA9 BLOC1S1 PRSS3 SMIM25 PODN S1PR3 CORO1A PABPC4 PPARG ITGA6 FAM83E REL
73 EPHB2 PPARD ITM2C NPM1 DPYSL2 CDHR5 PRAC1 COX7B PLCD1 VAMP8 GMDS BEST2 CSTB CREB3L1 DCLK2 HTRA1 EHD2 LTB SSR3 DSC2 ERGIC1 BACE2 LINC01857
74 RPL14 SFN SLC9A3R1 GINS2 ENTPD8 CTSA NANS CYBA SULT1A2 SLC9A3 MIA3 RPS24 JPT1 DNAH7 LYZ CLMP SLIT3 PIK3IP1 RAB30 MT1E CBFA2T2 MICAL1 RIPOR2
75 GAS6 BMP3 SLC17A4 APRT SYT7 RHOU HSPA1B COX6B1 S100A10 HLA-C GALNT12 STXBP6 PRELID1 CCDC152 IFI6 SVEP1 TPM2 IL18R1 PIK3CD-AS2 A1CF SRSF11 SH3PXD2A GRK3
76 PKDCC SDCBP2 PDE9A UQCRH CD177 ATP1B3 CYCS ATP5MD AKR1C3 ABCB1 CKAP4 SNHG19 OAF MUC12 MPEG1 PAMR1 KCNAB1 BCL11B BASP1 ANK3 ESRP1 PTP4A1 GPR183
77 FBL PDZD3 TMEM176B SDHAF3 IFI27 PPP1R14D TPI1 S100A14 TPRN EPCAM GALNT5 XBP1 CHMP2A ACHE KCNQ4 FAM107A NEXN FXYD5 JSRP1 SULT1B1 ZKSCAN1 FGFR2 CNR2
78 NXPE4 MXD1 TTC39B UBE2T CLDN8 SLC9A3R1 QPRT SHROOM1 PRR13 SMIM22 FGFR2 ACTN1 PKIB GPRIN2 LST1 COL5A2 KANK2 APBB1IP SPCS2 SELENOW SH3PXD2A CLDN4 CD40
79 RPL3 SERINC2 NEAT1 MRTO4 HLA-C CDHR2 NXPE4 TRPM4 CDHR5 MXD1 RAB15 FABP2 VAMP8 DST FGR MEDAG ITIH3 CD8A CXorf21 MALT1 ZRANB2 HSPA2 TSC22D3
80 RPS11 RFK CNTFR BOLA3 RHOBTB1 AQP7 NDUFA1 PAPSS2 ARL4A APPL2 ANXA13 SELENOM DDAH2 CASP5 CMYA5 PCOLCE2 FOXC2 TIGIT HERPUD1 ID1 CDC37 SMIM5 BASP1
81 TKT GPA33 GUCY2C EIF3E SCNN1A CTSZ SRRM2 B3GALT5 CD24 FABP1 KDELR3 CREB3L1 NDUFA1 DDX60 PTPN18 IGFBP7 ADAMTS8 RAC2 SLC22A17 CES3 TRPM4 CDC42EP5 PHACTR1
82 RACK1 NR1I2 CLCA4 HADH KRT18 VAMP8 ZBTB7A PHGR1 LINC02023 SLC9A3R1 QSOX1 ITGA2 TMEM120A MISP S100A9 SNAI2 FILIP1 CHRM3-AS2 THEMIS2 PHLDA2 ARGLU1 TSPAN3 SH3BP5
83 RPL11 SMIM22 RHOC DHRS4-AS1 S100A6 CLDN3 CDX1 NDUFB2 SFN NAALADL1 RRBP1 GPRIN3 ATP5PF GPR153 IGSF6 SLIT3 CAVIN3 CELF2 TET1 CHP2 FAM83E KRT20 CORO1A
84 SYNE2 LAMA3 DDAH2 RPS6 BEST2 SMIM22 CDC37 NDUFA1 LINC01133 S100A10 CREB3L4 PSMG1 EDF1 FHL2 NCF2 C16orf89 KCNMB1 IKZF3 AQP3 CDHR5 SIPA1L2 REG4 RAC2
85 RPL27A PRSS8 PPDPF HPDL WNK4 LMO7 COX7A2 ATP5MPL LGALS4 RHOF HDLBP TENT5C RPS26 RHOC TYROBP ANGPTL2 RASL12 CD37 ITGA8 LYPD8 SNRNP70 LIPH INPP5D
86 RPL19 CDKN2B LINC00483 NDUFAB1 GALE SLC17A4 ATP5MPL NDUFS5 CD177 MISP DOPEY2 AGR2 PDE9A LIPH SPI1 LRRN4CL MSRB3 RORA GMFG BSG ACADVL TM4SF5 CCR6
87 RPL30 MYL12B GSN RANBP1 UBB PTPRR AL355075.4 CES2 SLC17A4 TINAG TTC3 C12orf57 SDCBP2 ABCB1 LTC4S ADAMTSL4 CAV2 CCL4 P2RX1 ADGRE5 ROCK2 SLC16A9 IKZF3
88 SOX9 HSD17B2 PHGR1 DMAC1 FAM107B CDKN2B SLC4A4 MRPL34 MVP RHOU IL13RA1 CDK6 MT1G FOXA3 GPR34 FEZ1 HEY2 CD84 CRELD2 KRT20 CENPF MAN1A1 PDE4B
89 RPS14 ASS1 TDP2 TOMM20 DHRS9 APPL2 PPARGC1B CISD3 ACAA2 CTSA ATP2A3 ANO7 TMEM37 SLC9A3R1 FOLR2 KRT24 LRRC10B GPR65 TIFA MT1F IFI27 CYTIP
90 MLXIP CDKN2B-AS1 EMP1 SFXN4 REG4 SERINC2 SLC25A6 HSPA1B HSPB1 TMEM45B SH3PXD2A RPS6 CD177 CYP3A4 CD300A DNM3OS NFASC RGS1 LINC01781 FLNB RAP1GAP AC108863.1
91 RPS5 ATP1B3 PRR5L DKC1 KLB PRSS8 PHGR1 NDUFB10 LDHD AC005550.2 HID1 TSTA3 GFER ABCG2 ADGRG6 CREB5 LDB3 RUNX3 HERC5 SAMD9L TSPAN13 SP140
92 DMAC1 RHOF SGK1 AHCY MAN1A1 CDKN2B-AS1 PCLO ATP5IF1 MISP PRDX6 NANS LRIG1 CTSA HRASLS2 RNF144B PRELP COL4A5 SYTL3 SDF2L1 C10orf99 ERN2 MSN
93 RPL34 SCNN1B EEF2K PEBP1 KAZALD1 HRASLS2 BTG2 TP53I3 UQCRQ CLDN23 TSPAN13 RPS11 CES2 MX1 ZFHX3 FSTL1 RGS7BP GZMB DUSP5 IL18 MIA3 CLEC2D
94 HMGCS2 SGK2 LMO7 RPL36A VIPR1 LIPH RPL13A EXPH5 BLOC1S1 HRASLS2 ATP2C2 IFITM3 ACAA1 TRANK1 MRC1 NR2F1 NKD1 ITGAL ORAI2 GRN GFPT1 TNFAIP8
95 RPS15A NEAT1 DNASE2 HMGB3 GLUL PTTG1IP RPS18 CYCS COL17A1 SLC1A1 KIF5B RPL31 MISP LINC02023 DPYSL3 NKX2-3 AC100803.3 CLEC2D IGLL5 S100A10 KRT18 RASSF2
96 PEBP1 PCK1 KRT19 CENPW SH3BGRL3 C1orf115 C19orf70 NANS ATP1B3 CDKN2B TMEM61 TMEM123 SH3BGRL3 CIDEC CXCL8 PLAT LRCH2 GZMK PAIP2B LGALS3 ACSS2 TMEM154
97 RPS28 TMCC3 CIB1 MRPL1 RAB37 PRDX6 ATP5MD COX6C RHOU CLDN4 VSIG2 RPL12 CKB TMEM37 ITGB2 ECM1 FOXS1 RBMS1 LAX1 SRI MALAT1 TAGAP
98 RPL9 TMPRSS2 PDK1 LSM5 FGFR2 S100A10 NXPE1 ELF3 ACADS LYPD8 SCGB2A1 UQCRH GGT6 SLC16A9 CD86 ITIH5 AL365181.4 CD160 SSR4 ABCC3 SMIM6 DOCK2
99 RPS16 ATP8A1 PTTG1IP ATP5PB AGR2 BMP3 CLDN3 NDUFS8 B3GALT5 SRI PLCB4 RPL36A COX7B BMP3 NRGN DCLK1 PGM5 RASGRP1 IGKV4-1 HK2 KLF4 RASGRP2
100 RPL28 JPT1 CHMP2B GSTA1 FHL2 TMEM54 MT2A TSC22D1 RHOC GGT1 CRACR2B RPLP0 MXI1 RASEF BCAM MGP ACTA2 CRTAM HSP90B1 SDCBP2 S100A6 STK17A

separation of epithelial, stromal and immune cells

Cell split