knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p009n1

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p009n1"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p009n1.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 4845 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3088 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 22 23 3 4 5 6 7 8 9
1 IL7R SELENBP1 LEFTY1 CLCA1 TNFRSF17 CDC42EP3 SLC26A2 SELENBP1 BEST4 FRZB AQP8 TMIGD1 TBX10 SH2D6 MZB1 MGP CLEC10A TNFRSF17 HLA-DRA LEFTY1 AQP8 BEST4 TMIGD1 ITLN1
2 KLRB1 CA1 RARRES2 ITLN1 MZB1 TFF1 SLC26A3 CD24 OTOP2 ANXA13 CLCA4 MS4A12 FER1L6 AZGP1 IGHA2 SPARCL1 MS4A6A DERL3 HLA-DPB1 RARRES2 CLCA4 CA7 AQP8 CLCA1
3 CD3D SLC26A2 ADH1C ANO7 DERL3 FER1L6 CEACAM7 CFTR DMBT1 IGFBP2 SLC9A3 SLC51B RAB3B TRPM5 TNFRSF17 TIMP3 CLEC7A MZB1 HLA-DPA1 PRAC1 SLC26A3 OTOP2 CA4 WFDC2
4 TRBC1 MT1X CDCA7 REP15 IGHA2 S100P FABP1 SLC26A2 ADRA2A GALNT8 TMIGD1 PI3 CDC42EP3 BMX DERL3 SPARC CFP FCRL5 HLA-DRB1 GPX2 TMIGD1 SPIB CDA KLK1
5 CD2 MT1M PPP1R1B ST6GALNAC1 TNFRSF18 MUC2 MUC12 GPX2 CA7 RAP1GAP SELENOP CD14 S100P COL27A1 TSC22D3 CALD1 VSIG4 POU2AF1 MS4A1 CDCA7 ANPEP HES4 C11orf86 REP15
6 TRBC2 MT1G CFTR KLK1 SLAMF7 TBX10 TRPM6 PLCE1 MYOM1 ITLN1 ANPEP CEACAM7 TFF1 HPGDS EVI2B IGFBP5 P2RY13 MEI1 IGHD SELENBP1 CEACAM7 ADCY5 SLC51B SERPINA1
7 CD3E CD24 EBPL SERPINA1 FKBP11 ZG16 MS4A12 CA1 PCSK1N KLK3 SLC26A3 FABP1 AC093277.1 PTGS1 NUGGC PLAC9 FPR3 FKBP11 IGHM CFTR SELENOP PCSK1N SLC26A3 SPINK4
8 CD3G CA2 GPX2 OR8D4 CCR10 REP15 GUCA2A AC103702.2 ADCY5 AC005833.1 ISG15 CDKN2B-AS1 GPR153 SH2D7 MIR155HG CAVIN1 CD163 IGHA2 CD83 PKDCC MS4A12 MEIS1 EMP1 ST6GALNAC1
9 TRAC ADIRF KRTCAP3 RAP1GAP IGKJ5 GSN ANPEP NXPE1 MEIS1 FMOD TRIM31 PRDX6 SYTL5 HTR3E JCHAIN GNG11 LILRB2 SLAMF7 VPREB3 UGT2A3 SLC51B PROX1 MDK BEST2
10 CD7 MT1E FABP5 FCGBP FCRL5 MLPH PRSS12 HMGCS2 OTOP3 CACNA2D2 MDK CDA MLPH OGDHL IGHV3-11 EFEMP1 SLAMF8 IGF1 BANK1 CD24 MDK DMBT1 CLCA4 IL1R2
11 GIMAP7 CD14 PRAC1 SPINK4 CD27 AC093277.1 PHGR1 HSD11B2 SLC2A5 SPINK4 GPRC5A AQP8 MINPP1 B4GALNT4 TENT5C ITIH5 MS4A7 EAF2 TCL1A PPP1R1B ISG15 ADRA2A SELENOP TFF3
12 FYB1 MT1F PTPRO SLC12A2 POU2AF1 RAB3B CDKN2B-AS1 MUC4 SPIB OR8D4 GUCA2B PKIB REP15 GNG13 COL24A1 SERPING1 AIF1 TNFRSF18 HLA-DQB1 PRKAG2 GUCA2A UNC5C ANPEP FCGBP
13 HCST MT1H GGH ERN2 SPAG4 FCGBP SLC51B CA2 HES4 WFDC2 CDA AKR1B10 TPSG1 HCK IGHA1 EHD2 IGSF6 AC104699.1 HLA-DQA1 NXPE1 SGK1 CTSE MS4A12 MUC2
14 GIMAP4 KRT19 AQP1 TFF3 IGLV3-1 B3GNT6 PLAC8 PIGR C2orf54 KIAA1324 SLC51B PLAC8 SCEL HTR3C IRF4 LIFR CSF1R LGALS1 LINC02397 HES1 TRPM6 C2orf54 TRIM31 ATOH1
15 TXK CKB HSPD1 FRYL TNFRSF4 TUBB2A MT1M KNOP1 NBPF19 ANO1 EMP1 TMEM54 MUC2 POU2F3 IGKJ5 A2M MS4A4A EVI2B HLA-DRB5 NRARP MUC12 AL121929.2 HSD17B2 TPSG1
16 FYN MT2A TRABD2A WFDC2 CD79A RASEF LINC02023 HES1 CTSE SLC12A2 CA4 GUCA2A B3GNT6 PSTPIP2 SRGN LAMA4 CSTA LY96 PAX5 AC103702.2 CYP3A5 NEURL1 SMPDL3A AGR2
17 CD247 CHCHD10 ATP5MC1 HEPACAM2 GNG7 CAPN9 PRR15 NRARP UNC5C KLK1 HIST1H1C PHGR1 FOXA3 DKK3 P2RX1 TMEM47 TGFBI CREB3L2 FCER2 TXN TRIM31 NOTCH2 CCDC152 FRZB
18 CXCR4 UQCRQ C1QBP RAB26 AMPD1 TFF3 SGK1 AL355075.4 LINGO1 CLCA1 CEACAM7 C1QTNF12 CAPN9 MATK TCF4 CRIP2 CPVL SPINK2 AFF3 LCN2 CD177 MYOM1 SECTM1 HEPACAM2
19 SLFN5 LGALS4 MLEC SYTL2 IGF1 TPSG1 PDZD3 Z93241.1 C4BPA SPINK1 CIDEC SLC26A3 GSN RGS13 VIM FBLN2 MNDA KLHL6 LAPTM5 MUC4 FABP1 SLC2A5 CEACAM7 RAP1GAP
20 PTPRC LGALS2 PRDX3 L1TD1 SEC11C GPR153 SGK2 SOX4 CA4 RAB15 SLC15A1 KRT20 RASEF ALOX5 TMEM154 FBN1 CSF2RA GNG7 TNFRSF13C PRDX5 ABCB1 OTOP3 GPRC5A SPDEF
21 CD52 TXN AK4 IGFBP2 PRDM1 SYTL2 TP53I3 DOCK4 MUC5B PRAP1 SFN ZG16 LRMP DUSP5 BGN TLR8 IRF4 LTB TMSB10 PLAC8 CDK18 TMEM37 SLC12A2
22 LCK ATP5MC3 UGT2A3 ARFGEF3 SPINK2 FAXDC2 C1QTNF12 PROX1 GMDS MS4A12 ACAA2 FAM177B AVIL POU2AF1 ADAMTS1 CD36 NUGGC CD52 IRF2BP2 HIST1H1C NBPF19 PKIB B3GNT6
23 CD69 ELOB CWH43 MUC4 LGALS1 MINPP1 SCNN1B FABP3 ST6GALNAC1 CD177 C2orf88 TUBB2A HAP1 KLF2 SNCG ZNF385A A1BG CXCR4 SOX9 CDA CA4 GUCA2B ANO7
24 SCML4 SPINK5 PAICS SPDEF PRDX4 FOXA3 MT2A MT1H SERPINA1 NAALADL1 KRT19 ACOT7 IL17RB DDIT4 C11orf96 FCER1A CCR10 MARCH1 PIGR SLC9A3 MT1H HIST1H1C LRRC26
25 SRGN ID1 LCN2 WNK4 KLHL6 SMIM5 CDHR5 PRKG2 REP15 CDHR2 MYL6 CREB3L1 TAS1R3 CREB3L2 SLIT3 TLR2 CD27 CD37 PTGDR ABCG2 MT1G CYP3A4 FAM3D
26 SLA SLPI MYB ITPR2 UBE2J1 SYT7 AHCYL2 AL121929.2 L1TD1 MEP1A KRT8 RFLNA IGSF21 PRDM1 COX7A1 CCR1 ALDH1L2 FAM129C HMGCS2 C11orf86 CCND1 CD177 KIAA1324
27 SPOCK2 AKR7A3 CD24 BEST2 TIMP1 BCAS1 SIRT6 CEACAM1 PTCH1 PKIB C11orf86 FCGBP ATP8A2 IGKC LHFPL6 ITGAX VIM CD79A TMEM238 TMEM37 FRMD1 RARRES3 SLC12A8
28 LCP1 ETHE1 PPP1R14B NXPE4 CREB3L2 CD177 MIR194-2HG NBPF14 ALDH1A1 RARRES3 PDE9A QSOX1 DPYSL3 MEF2C FN1 CLEC4E SPAG4 HLA-DMB NUPR1 CDHR5 SLC2A6 HLA-A CREB3L1
29 BCL11B HSD11B2 SPINK1 GSE1 AC104699.1 TSPAN1 CEACAM1 FRMD1 SMAD9 SGK1 CEACAM1 RAB27A AFAP1L2 EMP3 PTN CACNA2D3 SELENOM CD79B ATP5MC1 GPRC5A SCIN MEP1A ERN2
30 CCL5 ATP5F1D BEX3 PLCB4 SELENOM LGALS9B TMIGD1 CDK18 HEPACAM2 HLA-A ATP1B3 SMIM6 ALOX12B ERN1 CLEC14A SLC1A3 TIMP1 LY86 SNHG19 SLC6A19 TTC39B FTH1 SPINK1
31 CST7 COX5B HSPE1 PRKAG2 EVI2B ENTPD8 SLC17A4 RHCG ARFGEF3 GUCA2A HRASLS2 ATOH1 PTPRT MEI1 NNMT CD209 EMP3 FCMR CHCHD10 PRSS3 MT2A GUCA2A RASD1
32 LTB PHGR1 IFITM3 ATP2C2 VIM CLDN8 IGSF9 LUZP2 HPCAL1 TRPM6 ETHE1 KLK1 SLCO4A1-AS1 FBXW7 IGFBP7 LILRA5 AMPD1 COL19A1 SPINK1 PKIB GUCY2C HPGD FMOD
33 ITK LGALS3 GGCT NXPE1 SMOC1 MUC13 COL17A1 NOTCH2 PPP1R1B LINC02023 LGALS3 TFF3 PLCG2 LILRB1 COL4A1 MPEG1 SEC11C CD22 HOXA11-AS EMP1 HRCT1 ISG15 MUC4
34 LCP2 FABP1 PDHA1 KIAA1324 MEI1 REG4 C2orf88 CCNYL1 PRAC1 SLC6A19 SMIM22 MUC13 NCMAP IGHV3-30 NID1 MRC1 TNFRSF4 HLA-DQA2 SOX4 HHLA2 CEACAM1 PRAP1 SYTL2
35 ARL4C C10orf99 IMPDH2 CEP126 CHST15 ANKRD36C CA1 HRCT1 CCND2 KRTAP13-2 AKR1C3 FHL2 GRK5 IGF1 SULF1 GFRA2 PRDM1 FCRL1 TLN2 C2orf88 GNPTAB FCGRT ZG16
36 ARHGDIB AKR1B10 EPHB2 RASD1 IGHA1 SCNN1A KRT19 LYPD8 RETNLB SMPDL3A HSD17B2 LGALS9B PLEKHB1 TIFA ELN NCF2 TXNDC15 CD72 FERMT1 PDE9A MT1E IFI27 CAPN9
37 ETS1 ATP5MD LAPTM4B AKAP9 A1BG TPM1 HHLA2 NEURL1 ANO7 MUC12 IFI27 SPATS2L FYB1 TIMP1 HSPB6 CXCL8 BST2 IRF8 GAS6 MIR194-2HG S100A10 SGK1 CDC42EP5
38 GZMA COX7B PHB2 ATOH1 ICAM2 DST MT1E SRI CKAP4 MISP MYL12B FAXDC2 PCP4 ITGAL PTGIS LST1 ICAM2 CD74 TOP2A IFI27 FABP5 PRSS3 KRT18
39 PIK3IP1 PIGR PRDX5 NEDD4L SSR3 GDPD3 SFN HSD17B2 ATOH1 IFI27 HPGD SERPINA1 KIT LINC01781 COL5A1 C1QA MANF BLK B3GNT7 SULT1A2 SDCBP2 TSPAN1 ARFGEF3
40 CD40LG S100A14 TXN NUMA1 BST2 SELENOP MISP GUCA2A RAMP1 SULT1A2 GUCA2B SYTL2 PAK3 ZBTB38 COL6A1 PTGS2 GYPC PTPRC PTCD3 FTH1 LYPD8 PLAC8 MLPH
41 GPR171 GPX2 TYMS GNE LY96 MCF2L PI3 PDLIM4 GNE PRSS3 SULT1A2 TPM1 DGKI ELL2 MYL9 P2RY6 PRDX4 SLC2A3 MUC5B LINC02023 CEACAM6 ABCG2 DLL1
42 GZMM HSPB1 FAM111B CRACR2B JCHAIN IL3RA PRSS3 TMEM176A RAB26 HPGD S100A10 F3 CD300LF HERPUD1 CFH HRH2 UBE2J1 POU2F2 MKI67 C1QTNF12 SULF2 ATP1B3 WNK4
43 IL2RB MRPL41 CD320 GPRIN3 MANEA CEACAM6 RHOU KRT20 MB FTH1 SRI TSPAN1 KCNQ4 HSPA5 COL1A2 STAB1 BMP6 CCR7 PLCE1 HPGD DSC2 KRTAP13-2 TCEA3
44 ICOS SULT1B1 HADH FAM3D TENT5C IFI27 LIPH SDCBP2 PODXL TSPAN1 PRSS3 MGLL KLK11 CCDC69 ABCA8 TYROBP MANEA SMAP2 ZKSCAN1 MEP1A GUCA2A MYL12B KLF4
45 NKG7 NDUFA1 MRPS33 AL390719.2 SDF2L1 MGLL APPL2 MT1G SLC36A4 ABCG2 TMEM37 SPDEF PIK3CG SSR4 RBPMS CD93 RAB30 TLR10 BDP1 PDZD3 ECE1 RFK HPCAL1
46 CD96 NDUFB2 SNRPD1 ANKRD18A IRF4 PARM1 FLNB CEACAM3 CHDH CFDP1 TST BCAS1 CAMP IGHV3-23 THY1 F13A1 ENAM CYBB ELF3 TSPAN1 HK2 CDHR2 MCF2L
47 TMIGD2 COX6B1 HACD3 CCND2 EMP3 SPDEF MYH14 CARD16 AP002498.1 SECTM1 S100A6 SYT7 SLCO3A1 RAB30 CRYAB C1QB TCF4 HLA-DMA C21orf58 RARRES3 MT1X NAALADL1 GMDS
48 SIRPG COX6C GAS6 HPCAL1 HERPUD1 SYTL5 SMIM22 CEACAM6 SHANK2 CDHR5 RHOC SCNN1A ST18 FOSB CLDN5 C3AR1 CRELD2 RHOH CENPF BMP3 ATP1B1 ABCB1 MB
49 EVL CES2 CCT2 NPIPB15 GYPC SECTM1 ARL4A CNTFR SPDEF PLAC8 GIPC1 TM4SF5 GRASP BTG2 AKAP12 RAB31 HSPA13 CD53 CCND2 CFDP1 SLC20A1 HLA-C GNE
50 CLEC2D ATP5ME IDH1 ABLIM1 EAF2 SCNN1B MVP SAMD9L RARRES2 RFK JPT1 SMIM14 CCM2L EAF2 ABI3BP CD86 MEF2C LYL1 ATP2C2 SMPDL3A MT1M C2orf88 IGFBP2
51 LINC01871 FAM162A ARSE D2HGDH TPST2 DHRS9 EPS8L2 S100A10 PLCB4 PRSS8 MUC12 ENTPD8 ANXA13 MANEA WWTR1 CLEC9A DUSP5 CD69 TRABD2A HLA-A SRI CLDN23 FRYL
52 GATA3 BSG CCND2 GMDS SSR4 NUPR1 TP53INP2 CREB3L4 TMEM37 FXYD3 GALNT5 BCAM BMP6 LUM CEACAM4 IGKJ5 HLA-DOA NXPE4 MUC17 PLCE1 PDE9A DOPEY2
53 CTLA4 KRT8 RNF186 TCEA3 SPCS2 MAN1A1 GUCA2B BEST2 COL17A1 DDAH2 SAT1 GDPD5 PABPC4 ADGRA2 AC020656.1 CCDC69 RCSD1 MLEC SMIM22 A1CF TIMP2 AKAP9
54 LAPTM5 NDUFB7 UQCRH FAM83E PABPC4 FAM177B SCIN SLC4A7 CYP3A5 FTH1 GDPD3 HIP1R RASGRP3 CAVIN3 PILRA CD48 RASGRP2 TCEA3 SERINC2 KRT19 SFN TMEM61
55 TSC22D3 GPT RPLP0 SI MANF NAAA AOC1 TPSG1 ABCB1 CD177 SCGB2A1 SEMA7A TRAM1 COL6A2 GPR34 SPCS2 FCRLA RPS24 SDCBP2 PHLDA2 CLDN3 HSD11B2
56 ZAP70 C19orf70 ALDH1B1 LUC7L3 SPCS3 GPRIN2 MT2A GDF15 PPARD SLC26A2 WNK4 CCDC28B ITGA8 ADH1B ASGR1 ELL2 CXCR5 KNOP1 LMO7 MT1F SERINC2 XBP1
57 FXYD5 TP53I3 FERMT1 GOLGB1 PIM2 FHL2 TMEM176B EPHB2 BMP3 CHMP2A FAM3D TREH DPP7 MMP2 FGR CD79A CR2 SNHG8 SLC17A4 TMSB10 SULT1A2 ATP2C2
58 CHRM3-AS2 UQCRC1 LRPPRC DNAJC10 ENAM DDX60 SLC20A1 PRUNE2 FCGRT TSPAN1 CLDN8 PTPN18 FKBP2 GJA1 BATF3 SRGN GPR18 DNPH1 MISP GMNN JPT1 DNAJC10
59 PARP8 PYCARD ATP5PB AC103702.2 IGKC CREB3L1 GPA33 FIBCD1 SLC6A8 DHRS11 BACE2 IGSF3 SSR3 CARMN CD4 TENT5C ARHGDIB SYNE2 SLC6A8 CKB HHLA2 DNAJC12
60 IL18R1 ATP5MC1 APEX1 KCNQ1OT1 SRGN VIPR1 SAMD9 KCTD3 SERINC2 LINC00483 HEPACAM2 IFI6 SPINK2 RBP1 ADGRE2 ITGA8 CD19 ZRANB2 GPA33 CDHR5 RHOC CEP126
61 KLRD1 AC008397.1 SUCLG1 ENTPD8 ADA2 SAT1 FXYD3 CRACR2B SLC1A1 PRAP1 KAZALD1 ZFHX3 MIR29B2CHG FOXF1 C1orf162 RRAGD HLA-DOB KLF5 TCF7L2 HSPB1 MXD1 ALDH1A1
62 CORO1A CHP2 STEAP1 HSD11B2 PDIA6 ADM GUCY2C CREB3L1 PDE9A BLOC1S1 GLUL AL357033.1 TSPYL2 TBX2 SPI1 SPATS2 REL ATP5MC3 CYP3A4 IL18 TRPM6 NEURL1
63 CELF2 CYC1 NAA38 DGKD SLC22A17 RAB27A ATP1B1 SOX9 PDZD3 SLC17A4 TSPAN3 FES LINC01480 CP FCN1 PABPC4 ADAM28 ARGLU1 CDHR2 C1orf21 MUC12 TPM1
64 XCL2 ROMO1 MRPS35 ITGA6 RRAGD KRT20 MT1F GPRIN3 TNFSF10 SGK1 SLC16A9 LIMCH1 SLAMF7 TMTC1 RGS18 SPCS3 PARP15 RPS18 RHOC ABCC3 CFDP1 CKAP4
65 CD6 CES3 AHCY ACOT11 NUCB2 RFLNA CDHR2 EIF4EBP1 RNASE1 CA4 IL3RA DCLK2 HIPK2 PLN SLC8A1 SSR3 SELL PAXBP1 SCNN1B ANK3 PPP1R14D ITPR2
66 GPR65 DHRS11 HMGCS2 LENG8 TET1 SH3PXD2A CEACAM7 SHF SDCBP2 APPL2 RASD2 LIPG DUSP1 FSTL1 OLR1 SDF2L1 RNASE6 RPL35 CDKN2B-AS1 ID1 FABP1 SCGB2A1
67 SKAP1 CDKN2B-AS1 ACSM3 ERGIC1 CRELD2 GALNT5 A1CF NTN4 FABP1 ITM2C IFI27 NRG2 CD69 COL14A1 RNASE6 TSC22D3 GPR183 ILF3 PHGR1 SELENOW SLC9A3R1 GALNT5
68 CYTIP CYP4F12 KCNN4 TTC3 CD48 KCNK1 EEF2K TFF3 CD68 TSPAN8 MLLT3 CCSER1 HYOU1 PREX2 CLEC4F ITGB7 LCP1 MLXIP S100A10 VIPR1 VAMP8 RAB27A
69 CD84 UGT2A3 ESD HSP90B1 SPATS2L HSD17B11 CA8 CTSA ABCG2 FXYD3 PLCB2 ATF5 GLT8D2 FPR1 THEMIS2 CCR6 SUCLG1 PRAP1 TMEM176A CTSA ATP2A3
70 GMFG B3GALT5 SLC44A3 IGKV3-20 HEPACAM2 VIPR1 WNK2 CGN SDCBP2 DPYSL2 PBXIP1 FKBP11 TFPI PLA2G7 PDIA6 SWAP70 ACADVL PRSS8 CES3 SDCBP2 PLCB4
71 MSN UQCR11 FARSB FAM92B MFSD4A ID4 IL1R2 PIM1 ACTB S100A6 PRSS22 EIF2AK4 PCDH7 IDO1 SRPRB KLF2 NDUFV1 JPT1 AOC1 MISP SLC39A11
72 TRDC PLCE1 EI24 SEC61B SLC16A9 SELENOW DLL1 SLC17A4 HHLA2 TSPAN13 ALOX5AP HOMER2 NOTCH3 CD1E DNAJB9 CNR2 CYC1 CTSA STAP2 PTPRR RAB26
73 S100A4 UQCR10 MPC2 ALDH1L2 ABHD3 LGALS3 PRDX5 CYP3A4 PPDPF SMIM5 NRGN DENND5B RCAN2 C1QC FAM30A GRK3 HSPA1B HNF4A CDHR2 PRSS8 STXBP5-AS1
74 HOPX SLC4A4 NFIA IGKV4-1 PLAC8 CKB ITPR2 NAAA SELENOP MFSD4A FRY SPCS2 CCDC80 TFEC IFNAR2 EBF1 CDC37 ATP1B3 NSD2 LINC02023 LGALS4
75 BTG1 ATP5F1B CCDC34 TSC22D3 SLC2A13 MT1M TSPAN13 C11orf86 CLDN3 GPRIN2 FGFR4 AC104024.1 SFRP1 RTN1 ALG5 AC004687.1 PEBP1 ASS1 GOLM1 LAMA3 UGT2B7
76 PYHIN1 DBI PPA1 CD38 LINC01559 PDLIM1 SLC12A8 MIR194-2HG PPP1R14D MCF2L TMEM198 AC103591.3 SEMA3E SCIMP ERN1 BTG1 IER3 DST PTK6 EPCAM TSTA3
77 CD53 SLC16A1 TKT NUGGC QSOX1 PPDPF LRRC26 TIMP2 MYL12A CD63 GAS7 H1FX ATP1A2 NLRP3 HERPUD1 SH3BP5 AHI1 SFN KRT20 SMIM22 CRACR2B
78 TRGC2 COX7A2 PEBP1 PAIP2B TSPAN3 TDP2 C12orf57 ADM EMP1 ERI3 TMEM74B ITGB7 HTRA1 CX3CR1 ORAI2 CD48 ZFP36L2 RHOU TNFRSF11A TNFSF10 GPR153
79 PRF1 TST SNRPE XBP1 CCDC68 S100A6 SLC9A3R2 CDKN2B UGP2 VSIG2 NRTN ITGA4 MRGPRF RNF144B AC093797.1 RIPOR2 NAA38 LRRC1 GPA33 CLDN4 RNASE1
80 IKZF1 TSC22D1 MRPS12 SPCS1 PNPLA2 ITM2C TCEA3 ACVRL1 SLC9A3R1 REG4 ADGRG6 DEPTOR NKX2-3 HLA-DMB BASP1 SCIMP PNN ZBTB7B FLNB CEACAM6 SLC9A3R2
81 LEF1 NDUFS6 MRPL11 FKBP2 ABCG1 TST FABP2 GPA33 HRCT1 CAPN8 FURIN SUB1 CSPG4 CLIC2 JCHAIN TCF4 ADD3 CDKN2B CARD16 GPA33 AC005833.1
82 ZNF331 SCNN1G CDT1 PPIB FSIP2 KRT19 KLK15 HRASLS2 SLC25A5 CD177 MARCKSL1 LMO4 KCNA5 MIR3945HG NUCB2 RPS27 UQCRH MTRNR2L12 TSPAN8 CIDEC SNORC
83 RASGRP1 MAOA TIMM13 BMP6 CEACAM5 PDK1 NXPE1 CLDN23 CA1 NAAA CGNL1 PDIA6 TNXB LILRB3 HSP90B1 NCF1 HIST1H1E PRDX6 PHGR1 AL365226.2 RAB15
84 TESPA1 PCLO RPS24 TRAM1 ARL14 CIB1 FAM174B SLC3A1 SH3BGRL3 MUC4 KRT18 CHST12 CHRDL1 IL1B GMFG LINC00926 ATP5ME COL17A1 S100A6 PIM1 FABP2
85 CD48 RAPGEFL1 CYC1 ORAI2 ATOH1 PRR5L GNPNAT1 C2orf88 C1orf115 HLA-C ITPR2 H3F3B SNAI2 PTAFR SEC14L1 CORO1A NDUFS5 ARL4A LGALS3 TMEM45B ELF3
86 ANXA1 AKR1C3 BOLA3 IGKJ4 TM4SF5 CFD HES2 CCDC152 LGALS4 AGR2 CMYA5 CD79A VWF ADAP2 PIK3CD-AS2 STK17B UQCRC1 SIRT6 TST SLC9A3 ANXA13
87 TNFAIP3 CNNM2 ARHGAP44 RAB30 DYRK2 SULF2 AGR2 SFN CA2 VIPR1 SLC25A29 CD38 IGFBP6 RASSF4 PAIP2B RPSA HIST1H2BG AAK1 C10orf99 CDKN2B-AS1 GFPT1
88 RBMS1 FXYD3 NFIC DNAJC3 SMIM14 NAE1 ACTN1 PTTG1IP CHP1 CLDN4 ATP2A3 SDF2L1 MCAM SIGLEC10 AC104024.1 PLEKHA2 GDF15 RFK MISP LINC01559 ENTPD8
89 RAC2 SLC39A5 SNRPF PNOC ACOT7 MSLN HES6 LINC01559 RHOU KRT18 PIK3R5 FAM30A EMCN ITGAM TRAM1 RPS23 PCK1 SEMA3B KLF5 CYP3A5 VSIG2
90 CD4 MOGAT3 TUFM ICAM3 AGR2 NPY1R GSE1 HLA-C SCNN1B MUC1 SPTLC2 HSP90B1 AOC3 AXL IGHA1 RPS8 MAFB VAMP8 PPDPF APPL2 GALNT12
91 TIGIT ENDOG KCNE3 CSF2RB CDHR2 DNASE2 AP003774.4 RHOU PRR15 ANKRD36C SPIB KLHL6 ADGRL2 JAML MOXD1 RPL18A ETS2 PPDPF FXYD3 SLC1A1 ABLIM1
92 GZMB ATP5MPL MGST2 TCF4 TSPAN13 LINC01559 RNASE1 C1QTNF12 MT1M DST MAP7 ZNF791 FAM107A IRAK3 SEC61B RPS27A AL031777.3 ATP8A1 GRN PPARD CCNJL
93 LAT TXNDC17 CLDN15 BASP1 VSIG2 RHOC SMTN LMO7 CTSA NUPR1 RASSF6 UBE2J1 CAV1 FCER1G BTLA RPS20 HEXIM1 PLEC CDC42BPA CDHR5 QSOX1
94 CLEC2B MVP NHP2 PDK1 SPINK4 CDHR5 FAM3D ENTPD8 DEFB1 SDR16C5 VAV1 PDK1 CCL2 TTYH2 CD38 RPL21 HIST1H4C EPS8 SULT1B1 NAAA HDLBP
95 GPR183 COX4I1 PCNA CYBA TCF7L2 GNPTAB FCGBP PCK1 LGALS2 BEST2 TLE4 ERO1B MPDZ RASSF2 SSR4 RPL11 VPS13A TMEM176B BMP3 TRPM4
96 RPS27A ACADS MDH2 CCDC69 HPGD BSG CRACR2A CLDN4 MISP IRF6 SOX9 CELF2 NXN P2RY14 LINC02362 RPL23A APPL2 NEAT1 SLC15A1 TSPAN13
97 PIP4K2A ATP1A1 DNPH1 SPATS2 LPIN2 KRT8 ERGIC1 LAMA3 CDKN2B PLAC8 ARHGEF38 XBP1 POSTN C5AR1 RGS1 RPL27 CGN HES1 KRT20 NEDD4L
98 RPS27 S100A16 DUT RHOQ WNK4 FTH1 IL13RA1 APPL2 MGLL HSPA2 TPM1 GNG7 GPC6 ITGB2 SPCS1 RPLP2 TNFSF10 GUCA2B SLC6A8 PTPRN2
99 ARHGEF3 LDHD BRI3BP SERP1 FXYD3 PHGR1 BMP2K JPT1 VAMP8 TMEM59 HOTAIRM1 ARRDC3 LINC01082 HLA-DQB1 CSF2RB RPL32 MXI1 C4orf48 ITM2C NANS
100 SMAP2 AURKAIP1 RANBP1 RASGRP3 SHROOM3 LAMA3 SOD3 C5orf30 TRPM6 UBB RUNX1 FCRL5 ISLR CMKLR1 TTLL7 RPS10 SHROOM1 MYH14 C1orf115 ADAM15

separation of epithelial, stromal and immune cells

Cell split