knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p008t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p008t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p008t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 4539 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 3336 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 3 4 5 6 7 8 9
1 CCL5 IL7R MZB1 LUM KRT17 TRIM31 VWF ELF3 FOXP3 TPSAB1 DUOXA2 C1QC CD79A MALAT1 C1QB RPS15A CTLA4 CD2 EREG MYH11 SPINK4
2 GZMA DNAJA1 DERL3 COL6A3 TRIM29 FAM3D AQP1 TFF3 CTLA4 CPA3 FOXQ1 C1QB MS4A1 IL7R C1QA RPS27A TIGIT KLRB1 OLR1 SOD3 ITLN1
3 GZMK UBE2S IGLV3-1 POSTN KLK10 PRSS3 CLDN5 FCGBP LINC02195 KIT SLPI C1QA BANK1 BCL11B C1QC RPS12 FOXP3 TRAC CD300E LMOD1 REP15
4 NKG7 KLRB1 JCHAIN DCN SCEL CLDN3 ACKR1 CLDN4 TNFRSF4 HPGDS TSPAN1 C5AR1 TNFRSF13C FYN GPNMB RPL32 TNFRSF9 SPOCK2 AIF1 PPP1R14A ATOH1
5 CD8A TRAT1 SPAG4 SFRP4 SERPINB5 EPS8L3 EGFL7 MTRNR2L12 LINC01943 MS4A2 EFNA1 MS4A6A BLK CCL5 APOC1 RPS3A TBC1D4 TRAT1 CSTA ID4 ST6GALNAC1
6 CTSW RPLP1 FCRL5 THY1 LAMC2 EPCAM RAMP2 DUOX2 TNFRSF18 SLC18A2 DUOX2 MS4A4A VPREB3 PTPRC CD14 RPL10 TRAC IL7R FPR1 CSRP2 ORM1
7 KLRD1 DDX5 TNFRSF17 CTSK C4BPB RAB25 SOX18 DUOXA2 TIGIT HDC CLDN4 SLC16A10 PAX5 ZFP36L2 MS4A4A RPS14 CD27 CD3D AQP9 MYLK HEPACAM2
8 CST7 H3F3B FKBP11 CTHRC1 ANXA3 LGALS4 CLEC14A CD24 TNFRSF9 RHEX ELF3 CSF1R IGHM CD2 CD163 RPL19 DUSP4 SARAF FCN1 PLN MUC2
9 CCL4 CD3E IGHG4 AEBP1 GPRC5A SLPI PCDH17 GPX2 SIRPG GATA2 EPCAM CCL3 FCRL1 RASGRP1 SLCO2B1 RPL11 TNFRSF18 CD6 CPVL CRYAB FCGBP
10 GZMH HSPA8 IGHG3 SPON2 LAMA3 ELF3 CDH5 CLDN3 IKZF2 LTC4S LGALS4 PHACTR1 CD19 CXCR4 PLA2G7 RPL21 ICOS CD3E LST1 CALD1 AGR3
11 GNLY JUNB IGKV4-1 FBLN1 KCNK1 PDZK1IP1 INHBB MUC4 ICOS GCSAML FXYD3 CD14 GNG7 SUN2 TREM2 RPL30 UGP2 TRBC1 IL1B ACTG2 SPINK1
12 TRGC2 EIF1 LINC02362 COL5A2 CST6 TSPAN1 CALCRL EFNA1 IL2RA CLU TACSTD2 CPVL SHISA8 TSC22D3 LILRB4 RPS27 CXCR6 CXCR4 TMEM170B CNN1 REG4
13 IFNG RPS15A CD79A SULF1 SDCBP2 PI3 EMCN TACSTD2 LAYN RGS13 TRIM31 CD163 LINC00926 GIMAP7 MSR1 IL7R CD2 AC058791.1 AC245128.3 C1R SPDEF
14 GZMB CD40LG IGHG2 CCDC80 PPP1R14C CLDN4 MMRN2 SPINK1 LAIR2 MAOB NECTIN4 MS4A7 IFT57 TRBC1 FCGR3A RPL13 TRBC2 TRBC2 VCAN MAP1B PCCA
15 DUSP2 CD69 IGKJ5 PCOLCE KRT80 LCN2 PLVAP TFF1 STAM STXBP6 CD24 IL1B CD83 SPOCK2 CSF1R RPL3 IKZF2 RORA TYROBP SORBS1 PHGR1
16 MATK HSP90AB1 JSRP1 FBN1 LAMB3 S100P SLCO2A1 KLF5 DUSP4 CTSG LCN2 AIF1 HLA-DRA TNRC6B APOE RPS13 CD3D ICOS LYZ MYL9 TFF3
17 XCL2 RPS27A IGHGP MXRA8 KLK7 GPX2 THSD7A PHGR1 CXCR6 VWA5A CEACAM6 CCL3L1 SPIB CD3E CD68 CCR7 CD3E RPLP1 CLEC4E C1S L1TD1
18 GZMM TRAC IGLC7 THBS2 KRT7 TSPAN8 TIE1 CYP3A5 IL2RB AL662860.1 SOX9 MRC1 AFF3 TNFAIP3 VSIG4 TPT1 CD7 FYB1 BCL2A1 PDLIM3 AGR2
19 PRF1 ZFP36L2 IGLC6 EMILIN1 PRSS8 FXYD3 PTPRB FXYD3 SLAMF1 GALC MUC4 FPR1 CD37 CD3D CTSB SARAF LTB CD3G PLEK ITGA7 FAM3D
20 CXCR4 TRBC2 SEC11C COL5A1 KRT19 PHGR1 ARHGAP29 SOX9 CD2 ADCYAP1 KRT8 LILRB2 CD79B STK4 SPI1 RPLP2 LAYN ITM2A C5AR1 KANK2 KIAA1324
21 TRDC HSP90AA1 POU2AF1 GREM1 MISP DUOXA2 PCAT19 FAM3D TOX2 SLC45A3 PDZK1IP1 MFSD1 CXCR5 DUSP2 AIF1 RPL9 RGS1 FYN KYNU EFHD1 WFDC2
22 LYAR UBB IGHA2 EFEMP1 FERMT1 S100A14 FLT1 VNN1 CD7 FCER1A KRT19 SLC7A7 HLA-DPB1 TAGAP MPEG1 RPL34 STAM CD40LG NCF2 TGFB1I1 AC005833.1
23 UBE2S TRBC1 SSR4 COL8A1 MMP7 CEACAM6 PALMD LAMB3 TRAC ALOX5AP S100A14 PLEK POU2F2 PIK3IP1 TYROBP RPS4X IKZF4 PTPRC G0S2 CARMN NPW
24 PARP8 RPS12 XBP1 FNDC1 NECTIN4 DUOX2 CYYR1 COL9A2 CD27 SMIM1 TSPAN8 CD68 LY9 KLRB1 NPL RPS6 CARD16 LINC00513 CCRL2 ANGPTL1 B3GNT6
25 CD3E SERTAD1 PRDX4 MXRA5 INAVA MUC3A TSPAN7 PTPRF TBC1D4 PTGS1 DSP KYNU BCAS4 ID2 AC020656.1 TRAC SPOCK2 TAGAP FGR SYNPO2 ENTPD8
26 TUBA4A CD3G IGKV3-20 ISLR DSP MUC4 JAM2 TSPAN1 SPOCK2 AREG KLF5 SLCO2B1 MIR29B2CHG JUNB MFSD1 PASK LCK PDE3B LILRA5 ACTA2 COLCA1
27 HOPX H2AFZ IGHV1-24 CDH11 CTSE PKP2 PREX2 CEACAM6 GBP5 HPGD TMC5 CXCL8 IRF8 TUBB4B CPVL BCL11B TNFRSF4 CREM PHACTR1 COL6A2 GPX2
28 H3F3B DNAJB1 FKBP2 GGT5 TACSTD2 LAMB3 SHANK3 HOXA9 UGP2 ACOT7 RAB25 SDS EZR PRMT9 GM2A RPS3 HLA-A CD247 IRAK3 SPARCL1 RAB25
29 APOBEC3G BTG2 IGHV3-23 ALDH1A3 FOXQ1 FOXQ1 ZNF385D MUC2 SKAP1 BMP2K GPRC5A STAB1 RUBCNL C12orf65 RNASE6 RPS25 GBP5 BCL11B CLEC7A KCNJ8 LYPD8
30 CD3D BTG1 DNAAF1 HTRA3 MSLN CD24 GALNT18 L1TD1 FANK1 GMPR PTPRF CXCL2 HLA-DPA1 BTG2 HLA-DMB RPLP1 CACYBP DNAJA1 PTPRE ADAMTS1 LGALS4
31 TSC22D3 TSC22D3 SLAMF7 ELN ITGA2 SLC44A4 ROBO4 FOXQ1 LCK CSF1 PI3 HLA-DMB CD74 CD247 LYZ RPS23 SIRPG STK17A SLC16A10 RASL12 CLDN3
32 AC020916.1 CCL5 SDF2L1 COL12A1 MAL2 ASS1 CXorf36 MTMR11 IL1R2 CD9 CDX2 FPR3 HLA-DRB1 GZMK MS4A6A RPL37 CYTIP CNOT6L C19orf38 CACNA1H RAP1GAP
33 TUBB4B TPT1 SSR3 MRC2 PDZK1IP1 ALDOB TMEM255B COL16A1 CD3D IL18 LMO7 TYROBP GRASP DUSP1 FPR3 RPL35A TSC22D3 LCK S100A8 TAGLN KLK1
34 HCST CD3D IGHG1 FAP CHMP4C MSLN RASIP1 S100P CD3E MLPH LAMB3 HLA-DQB1 POU2AF1 RASA2 RASSF4 RPL39 S100A4 CCR6 CD86 CAV1 NXPE1
35 MYADM SARAF IGHA1 PDGFRA ITGB6 MUC13 ADCY4 AL135925.1 CD28 SAMSN1 KLK10 VSIG4 HLA-DQA1 YPEL5 MRC1 RPS29 TRBC1 CLEC2D FGL2 NOTCH3 S100P
36 RGCC RPL13 RASSF6 FBLN2 EPCAM KLF5 ERG AC023157.3 LTB LAPTM4A PRSS22 CXCL3 FAM30A EHD1 SLC1A3 RPSA IL2RB TSC22D3 EPB41L3 RBPMS FXYD3
37 OASL SAP18 HERPUD1 BICC1 PRSS3 KRT8 KDR AFDN CARD16 CKLF CLDN3 RNASE6 RPS23 DENND2D CYBB CD3E HPGD PASK SLC11A1 NEXN RAB26
38 CD69 FYN PIM2 SRPX2 CEACAM6 AGR2 NRN1 ARGLU1 ZC3H12D RPL36AL ITGB6 FCGR3A TMEM156 CLEC2D LAIR1 RPL23A PTPRC CD5 CSF1R TPM2 S100A14
39 CRTAM GPR171 IGLC3 PODN SLPI KRT19 MYCT1 LAMC2 LAT ADRB2 KRT18 LYZ RPL13A AC020916.1 ACP5 SELL SKAP1 CD69 HCK TNC AP002498.1
40 BRD2 PASK IGLL5 SERPINF1 MYH14 NECTIN4 ADGRL4 SOX4 CLEC2D ACSL4 TRIM29 HLA-DMA FCMR MYADM CYP27A1 MALAT1 ARID5B PPP1R2 AC020656.1 SGCA SPRY2
41 DNAJA1 RPL10 HSP90B1 LSAMP CDKN2B SMIM22 TM4SF18 ANKRD36C UCP2 CAVIN2 MUC13 CLEC10A AIM2 SRSF2 ADAP2 CD3D IL2RA CD7 CFP NNMT CDX1
42 CD3G AC020916.1 MANF MMP2 TSPAN8 TACSTD2 TEK CENPF ITK SRGN AL365226.2 PLA2G7 CD40 LCK ITGAX RPL22 ZC3H12D CYTIP MNDA S1PR3 SLC12A2
43 ID2 MYADM SELENOS FSTL1 S100A14 LMO7 CD34 REP15 GATA3 FTH1 PERP CLEC7A CD52 ZC3HAV1 SLC15A3 RPS2 CD247 AC026979.2 VSIG4 RBPMS2 EPCAM
44 HSPA8 ZC3HAV1 CYBA CYGB SFN KCNK1 ARHGEF15 ANXA11 RGS1 BTK SERINC2 HLA-DRB5 SMAP2 SOCS1 ADAMDEC1 GIMAP7 SOD1 HSPA8 CD68 MRGPRF ELF3
45 SRSF2 CXCR4 SDC1 CD248 TINAGL1 DSP AFAP1L1 SH2D2A NFKBIZ LAMC2 SPI1 CCR7 TNFSF14 ASAH1 RPS16 STK17B CCR7 PLAUR AOC3 KRT8
46 DYNLL1 DUSP2 NUCB2 FIBIN CD24 S100A16 FAM69B SAMSN1 ALDH1A1 JUP MMP19 RPL32 AC026979.2 FCGR2B EEF1B2 AC058791.1 RPS15A SPI1 C11orf96 BEST2
47 PTPRC TUBA1A ISG20 ANTXR1 CGN CDH17 CPLX1 PRDM1 VIM FUT3 IL1A RPL11 DNAJA1 HLA-DQB1 RPS5 LINC00513 TNFAIP3 ACSL1 SERPING1 CLDN4
48 CD7 RPL30 RAB30 GLT8D2 CRB3 VNN1 MPZL2 HS3ST3B1 GLUL PRSS3 MPEG1 MEF2C FOSB SIRPA RPL18 DOK2 CD52 FAM49A GJA4 IGFBP2
49 UBB ZFP36 ST6GAL1 FKBP10 FUT3 VSIG2 SOX17 HLA-A ALOX5 MSLN F13A1 LINC01857 C6orf48 C5AR1 RPL28 PIK3IP1 SOD1 BASP1 ABCC9 TSPAN8
50 PTPN22 MALAT1 ST6GALNAC4 C1S WNT7B MYH14 FAM167B IKZF4 ANXA1 FAM3D CD86 REL UBE2S CTSL RPS28 BTG3 CTLA4 C1orf162 KCNMB1 TFF1
51 RUNX3 FOSB IGKC NR2F1 KLK6 TFF3 LDB2 F5 GPR65 MTMR11 OLR1 SNX2 FOS PILRA TRBC2 PBXIP1 ETS1 S100A12 SYNM DPEP1
52 ZFP36L2 RPL21 CRELD2 PCDH18 TSPAN1 ABHD11 SEMA3F CCR6 AC020916.1 CAMK2N1 ADA2 RPLP2 DYNLL2 MPP1 CD6 PMAIP1 TPT1 LILRB2 COL6A1 CEACAM6
53 MALAT1 RPS19 CD38 EFEMP2 FSTL3 KRT18 S1PR1 CYTIP NFKBIA CYP3A5 LST1 ST6GAL1 CTSW MS4A7 RPS20 IL7R ZC3HAV1 GK COL4A2 MUC3A
54 CD52 PTPRC FAM30A COL10A1 ALS2CL CGN STC1 S100A4 NFE2L3 CDH17 CLEC4E CXCR4 SMCHD1 MMP9 RPL4 B2M ARHGDIB TREM1 IGFBP7 AKR7A3
55 ANXA1 RPS3A TENT5C WNT2 CDH1 C4BPB F8 ASB2 PAK1 S100A16 CYBB RPL21 IER5L SLC7A7 CD3G PTTG1 SRGN SLC43A2 MFGE8 FOXA3
56 HSP90AA1 RPS27 UBE2J1 BGN KRT8 MUC1 LHX6 CD5 CTNNBL1 KCNK1 C3AR1 RPS27A TSPYL2 FCER1G RPS18 SAMSN1 JUNB RNASE6 NDUFA4L2 MUC4
57 DDX5 SPOCK2 LMAN1 CXCL14 CDKN2A INAVA SOX7 PTTG1 RHOBTB3 ATP1B1 FAM49A LAPTM5 AC004687.1 HMOX1 RPS19 RHOH DDX5 STX11 DDR2 KLF5
58 H2AFZ CD52 CD27 C1R JUP SPINK1 NOVA2 TRBC2 RNF130 S100P CCRL2 RPS8 IRF1 FUCA1 IRF1 ISG20 LDHB TLR2 BGN ERN2
59 SRSF7 ODC1 ERLEC1 COL1A2 GJB3 EFNA1 MMRN1 RASGRP1 LEO1 SLC44A4 SGK1 EEF1B2 RORA RNF130 FYB1 CD3G IRF1 CD14 PGM5 KRT18
60 CD247 RPL32 SPCS2 ASPN SPINT1 FCGBP FGD5 TSPAN5 RPL23 VNN1 HLA-DQA1 RPL8 IER2 CXCL16 RPS8 PRDM1 RARRES3 NLRP3 AKAP12 SLPI
61 TRBC2 IRF1 TRIB1 LOXL1 RFLNA DDR1 ADGRF5 CD3G TNFSF10 IFI27 PLAUR RPL19 CD69 GAA LTB BTG1 CD28 CYBB COL3A1 PPP1R1B
62 TNFAIP3 DUSP1 HSPA1B COL6A2 LMO7 AOC1 VEGFC PMAIP1 FOSB ASS1 CD72 EBF1 SERTAD1 PTAFR RPL10A CLEC2D GIMAP7 PRAM1 FXYD1 LCN2
63 FYN EIF4A3 HIST1H1C AGT IRF6 BAIAP2L1 GJA1 FAS IL18R1 CGN FCGRT RPL23A GADD45B MAFB LDHB CCR6 GPR171 TET2 FHL5 PKP2
64 STK17A AL121944.1 SEC61B GPX8 DSG2 AZGP1 HYAL2 HLA-C AKAP13 CAPN8 MIR3945HG RPS5 TLE4 BCAT1 TRBC1 UBC HSP90AB1 CD300LB COL1A2 SMIM22
65 EIF1 PPP1R2 CLPTM1L COL14A1 RAB25 IFI27 TMTC1 RHOH ALAS1 MISP HLA-DRA RPS11 MKNK2 PLTP RPL29 LINC01943 PDCD4 LILRB3 LHFPL6 S100A16
66 BTG1 DYNLL1 SEL1L3 GPC6 CLDN4 TMEM54 SELP RAC2 PHF20 SPINT1 ABCA1 RPS20 ILF3-DT CD84 RPS15 GMFG ZFP36L2 RETN AEBP1 CDC42EP5
67 LCK AREG SEL1L COL6A1 TNNC1 HNF4A NUAK1 CUL9 CAPG MYO6 RBM47 CD69 NKG7 AKR1B1 EIF1 ARHGDIB LTB HLA-DRB5 EMILIN1 CDX2
68 IL7R STK17A A1BG COL3A1 TMPRSS4 MISP BCAM STK17B SYAP1 FUT6 EREG RPS7 RCSD1 CD86 RPS7 HSPE1 RPS27A LGALS2 CPE SCNN1A
69 CMC1 RPSA IGLC2 CPXM1 CAMK2N1 CAPN8 GNG11 SIT1 CD69 HOXA9 MAFB RPS27 LGMN FAU SARAF BTG1 TYMP FERMT2 TSTA3
70 HSP90AB1 CD7 SPCS3 LAMA2 BAIAP2L1 CDX1 CAVIN2 GBP2 RPL34 MYO7B CD300A NFKBID PLAU RPL27 IRF1 YPEL5 SDS DES FABP2
71 CCL4L2 NCL TP53INP1 SERPINE2 KLF5 FUT3 KANK3 CTSC RAC2 PHGR1 FCER1G RASSF6 HLA-DRB5 PTPRC FAS FXYD5 HLA-DRA CASQ2 TACSTD2
72 FOSB RPS14 DUSP5 ADAMTS2 FXYD3 PERP DLL4 IL21R RPL11 MYH14 AKR1B1 RPS3A HLA-DMA SPOCK2 SRGN H2AFZ JAML HSPB6 WNT4
73 TAGAP RPLP2 TMEM208 FGF7 LSR DSG2 SYNPO PBX4 SYTL3 DDR1 RNF130 RPSA C3AR1 JUNB UBE2B HSP90AA1 CXCL2 COL1A1 GMDS
74 RARRES3 TLE4 RABAC1 COL11A1 PTGES GALNT3 TLL1 PTPN22 ABCA1 LSR PILRA RPL9 LIPA RPS4Y1 RASGRP1 RGCC SLC7A7 EDIL3 AL365226.2
75 TRBC1 EEF1B2 DNAJC1 STEAP1 COL7A1 MTMR11 FAM110D BTG3 TESPA1 PLEKHA6 GPNMB RPL18A SIGLEC10 CD7 CORO1B EIF1 FCGR3A PTP4A3 MUC5B
76 PIK3R1 TUBB4B ITM2C ITGA11 MUC4 CDX2 IL3RA ARID5B ATP6V1F COL7A1 FGL2 RPS14 KCTD12 RPL13A GATA3 RPL28 MS4A6A LTBP1 SLC44A4
77 IER2 CD48 SLC7A5 NDN PRSS22 ANK3 MTUS1 TNFRSF1B BACE2 F11R MGAT1 RCSD1 HLA-DOA KLRB1 HSP90AB1 TMSB4X ITGAX RCAN2 TMEM238
78 CNOT6L NEU1 SRM ADAM12 C6orf132 SOX9 TM4SF1 PHACTR2 LYL1 EPS8L3 HLA-DPB1 RPL3 NCF2 CD48 ICA1 GSPT1 OGFRL1 MT1M MUC13
79 SAP18 AC058791.1 HSPA6 COL1A1 LCN2 S100A7 VWA1 ITM2A SELENOK GPX2 SH2B3 RPS6 FCGRT ZFP36L2 PPP1R2 HSPH1 FCER1G TNS1 KRT19
80 TRAC HSPH1 SERP1 DIO2 SERINC2 PTPRF FZD4 PHLDA1 RASSF5 ABCC3 CXCL16 SMIM14 CD300A TSHZ2 HSPA8 PIK3IP1 MPEG1 PDGFRB CRACR2B
81 SERTAD1 RPS25 HDLBP VCAN PODXL GPRC5A RAI14 IRF4 MBOAT7 AFDN EMILIN2 RPL10A ITGB2 RPS10 ZBTB38 STK17B GPR84 GUCY1B1 HES6
82 DUSP4 TNFAIP3 JUN CALD1 RTKN2 CCDC6 LINC01235 CORO1B RPS4Y1 ADGRF1 SIRPA ORAI2 ITGAM RPL18A NOP58 RPL10 HLA-DQB1 TMOD1 SERPINA1
83 H2AFX SRSF7 SPCS1 WISP1 SHROOM3 PRSS22 ADAMTS9 DEF6 TESC AOC1 HLA-DPA1 BTG1 HLA-DQA1 EEF1A1 HERC5 ODC1 ANPEP IGFBP4 IFI27
84 NCL AMD1 UBC SPOCK1 PKP3 COL9A2 PDE2A HPGD CLIC1 HOXA3 HLA-DRB1 RPL13 SPP1 RPL14 DNAJA1 GPR183 NAMPT GUCY1A1 IHH
85 KPNA2 FOS TMEM258 IGFBP5 LGALS4 AMN DOCK9 P2RY10 CSF2RB PRR15L TBXAS1 RPS2 LY86 RPS9 TNFAIP3 PBXIP1 HLA-DRB1 COX7A1 FUT3
86 CD48 FYB1 TMED9 PDPN DDR1 SERINC2 COL15A1 CD4 RPL39 LAMA3 ASAH1 RPS15A LILRB3 CD2 FYN CALM1 SERPINA1 CNN3 KRTCAP3
87 YPEL5 GIMAP7 RPN2 PLOD2 PLPP2 TRIM29 CAV1 DUSP16 B4GALT5 ALS2CL TYMP JUND LHFPL2 RPL12 RBPJ RPS12 SEMA6B GJC1 MISP3
88 ODC1 CACYBP PPIB DKK3 COL17A1 FUT6 HSPG2 B2M TMEM154 TRPM4 CTSC RASGRP2 AP1B1 UBA52 SMAP2 CSRNP1 C9orf72 MGP MAL2
89 HIST1H4C ANXA1 RRBP1 NNMT PERP WFDC2 WWTR1 NINJ2 SDCBP VANGL2 TGFBI SP110 STAB1 RPL5 RORA SMAP2 MGAT1 RERGL TMEM254
90 JUNB CITED2 HSPA1A PRRX1 EFNA1 PRR15 CD93 FBXO45 MPP1 SCNN1A ICAM4 RPL37 GAL3ST4 RPS21 GBP2 ARID5B TNFRSF1B FILIP1 PCSK9
91 NEU1 ID2 BTG2 RARRES2 MET ARL14 GPR146 PIM2 CD44 SMIM22 CD83 HERPUD1 SLC16A10 PABPC1 MALAT1 CACYBP RAB31 HEYL CD24
92 JUND SRSF2 SELENOK IGFBP6 PDGFA SELENBP1 PTPRM TNIP3 EGR1 CLTB LRRC25 FAU GNS AC026979.2 MAGEH1 GLIPR1 HK2 FHL1 TSTD1
93 KLRB1 BRD2 PRDM1 PLAT ELF3 C4BPA RHOJ CREM RGS2 PON2 EPB41L3 SWAP70 CAPG BTG2 CREM ZNF331 LITAF HAND1 FUT6
94 CALM1 YPEL5 IGHM CLEC11A AOC1 CEACAM5 CRIP2 PCED1B ARHGAP18 SPINK1 G0S2 ZNF165 ALOX15B PPP1R2 HSPD1 RAC2 FPR3 CAV2 EPS8L3
95 ZFP36 TRGC2 PDIA6 DDR2 SLC44A4 LSR RAPGEF5 AC058791.1 RPS4X S100A6 CD302 LYN PPT1 RPL7 RAC2 CRYBG1 HBEGF COL14A1 TCEA3
96 TGFB1 DOK2 DNAJB1 TMEM119 ITGB8 FABP1 SASH1 CORO1A RGS10 EPPK1 RNF144B DAPP1 OSCAR ZC3HAV1 HSP90AA1 TNFAIP8 ASGR1 IFITM3 COL16A1
97 PIP4K2A RGCC ANKRD37 SFRP2 CLDN3 MYO6 FILIP1 LAX1 RAB32 ANK3 HMOX1 YPEL5 PLXNC1 RPL31 PTPN22 RPS29 THBS1 MCAM DSP
98 DOK2 JUND HIST1H2BG LINC01705 PLS1 CYP3A5 SEMA6A ACAP1 RHBDD2 CCDC6 LILRB4 RPS18 ATP6AP1 RARRES3 DEDD2 RPL13 SLC8A1 PLS3 MAP7
99 TUBB2A NPM1 HSPB1 ANGPTL2 MUC13 ATP1B1 NPR1 FBLN7 NSMCE1 CEACAM1 BCL2A1 RPS25 CTSH TOMM7 MRPL1 RPS19 CD1D SLC7A2 GDF15
100 GPR65 AQP3 OGN PTPRF PCCA F2RL3 CD79B ARHGDIB TMPRSS4 NFIL3 RPS16 GPR34 RPL6 HLA-C AQP3 VEGFA ITGA1 RPL36

separation of epithelial, stromal and immune cells

Cell split