knitr::opts_knit$set(root.dir = rprojroot::find_rstudio_root_file())
knitr::opts_chunk$set(echo = F, warning = F, message = F)

p007t

Data loading and qc

Velocyto counts are loaded

Data Filtering

## $cluster_res
## [1] 2
## 
## $sample_name
## [1] "p007t"
## 
## $loom_file
## [1] "_data/_patients/velocyto/p007t.loom"
## 
## $nFeature_lower
## [1] 500
## 
## $nFeature_upper
## [1] 5000
## 
## $nCount_lower
## [1] 1000
## 
## $nCount_upper
## [1] 50000
## 
## $nFrac_s_lower
## [1] 0.3
## 
## $nFrac_s_upper
## [1] 0.9
## 
## $nFrac_u_lower
## [1] 0.1
## 
## $nFrac_u_upper
## [1] 0.7
## 
## $nFrac_a_lower
## [1] 0
## 
## $nFrac_a_upper
## [1] 0.2
## 
## $pMT_lower
## [1] 0
## 
## $pMT_upper
## [1] 0.8
## 
## $pHB_lower
## [1] 0
## 
## $pHB_upper
## [1] 0.1
## 
## $rel_comp
## [1] 10

Before filtering

## An object of class Seurat 
## 100542 features across 4697 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

After filtering

## An object of class Seurat 
## 100542 features across 2044 samples within 3 assays 
## Active assay: spliced (33514 features)
##  2 other assays present: unspliced, ambiguous

Data normalisation

Cell cycle scoring

Data scaling and dimensionality reduction

Elbow plot

Cell cycle phase

Cell type identification

Louvain clusters

Cluster marker genes

rank 0 1 10 11 12 13 14 15 16 17 18 19 2 20 21 3 4 5 6 7 8 9
1 CCL5 MZB1 ITLN1 CSTA ANXA3 AHNAK2 OLFM4 ITLN1 TRDC COL1A2 C1QC FOXP3 PIGR TPSAB1 VWF TSHZ2 MS4A1 TFF1 PIGR IL7R CCL5 S100P
2 GZMA DERL3 CLCA1 AIF1 TRIM29 SYT13 PIGR CLCA1 KRT81 COL14A1 C1QA CTLA4 FABP1 CPA3 RAMP2 LMO7 BANK1 FIBCD1 MUC4 ICOS CD8A TFF1
3 CD8A IGHA2 REP15 LST1 EMP1 NTSR1 MUC12 SPINK4 CD160 C1S C1QB LAIR2 TCIM MS4A2 CLEC14A TMC5 VPREB3 SLC7A11 OLFM4 SPOCK2 NKG7 MDK
4 NKG7 JSRP1 TPSG1 CD300E CEACAM6 TFF2 MUC4 FCGBP KLRF1 EMILIN1 MSR1 ICOS PHGR1 ADCYAP1 CDH5 SNHG19 CD79A ABHD2 SOX4 CD3D CD3D CDKN2A
5 GZMB JCHAIN SPINK4 CFP COL17A1 ANXA3 REG1A REP15 GNLY COL3A1 FCGR3A CD28 CA2 HDC EMCN LENG8 TNFRSF13C S100P FABP1 CD2 GZMM FIBCD1
6 CD7 FKBP11 FCGBP PLEK KRT17 SDR16C5 ALDOB ZG16 NKG7 CALD1 VSIG4 LINC01943 CDHR5 HPGDS CYYR1 SLC7A11 LINC01781 CEMIP LINC01970 GPR183 TRAC SELENOP
7 PTPN22 TNFRSF17 ZG16 IL1B GJB3 KLK10 DMBT1 SPDEF HOPX BGN MS4A4A TNFRSF4 MUC12 CTSG PLVAP SPRY2 CXCR5 AQP5 MUC12 TRBC1 TRBC2 DSG2
8 TRBC2 IGHA1 HEPACAM2 CPVL AHNAK2 TFPI PHGR1 SPINK1 CD247 NNMT APOC1 CCR6 SLC26A3 SLC18A2 CLDN5 CAMK2N1 HLA-DQA1 EPCAM PHGR1 LTB GZMK COL17A1
9 CD3E IGKJ5 SPDEF MNDA SDR16C5 DCBLD2 PLA2G2A ANO7 KLRD1 C1R FPR3 TNFRSF18 PLCE1 KIT KDR ARGLU1 HLA-DRA TESC AC103702.2 CD3E CD69 LMO7
10 CD3D CCR10 RETNLB SPI1 KLK10 FIBCD1 AC254629.1 NEURL1 XCL1 IGFBP5 GPNMB SPOCK2 SLC37A2 GATA2 TEK ADAMTS6 LY9 LMO7 TCIM FYB1 GZMA PERP
11 SAMSN1 SLAMF7 MB FCN1 FHL2 FERMT1 SOX4 MUC2 GZMA COL5A2 SDS CD2 ID4 KRT1 CAVIN2 FERMT1 BLK DDR1 PLA2G2A KLRB1 CD7 AZGP1
12 TIGIT IGLV3-1 KLK1 S100A8 LAMB3 MET FAM3D TFF3 CCL5 SPARC PLA2G7 IL2RA C10orf99 TPSD1 MMRN2 H1F0 CD37 PERP MTRNR2L12 RORA CD2 ADIRF
13 CD3G POU2AF1 FABP2 IL1RN SELENOP CTPS2 ID4 RNASE1 IFNG MYL9 CCL18 ZC3H12D ACADS RHEX SOX18 COL27A1 MEF2C MET ID4 SARAF CD3E HMGA1
14 HCST SSR4 SPINK1 NCF2 SERPINB5 SLCO4A1-AS1 NUPR1 RETNLB IL2RB COL6A2 TREM2 CD3D MUC4 AL662860.1 APLNR TRIM2 HLA-DRB1 AZGP1 REG1A CD28 CST7 MAL2
15 GNLY PIM2 RNASE1 G0S2 SDCBP2 EPHB6 TMEM238 RAP1GAP CD7 COX7A1 SLCO2B1 LAT AC023157.3 CMA1 NPR1 RBM26 HLA-DPA1 SPRY2 HIST1H2BG PTPRC IFNG GPX2
16 CD2 SPAG4 MUC2 MPEG1 MAL2 BMP4 MFSD2A TPSG1 MATK AEBP1 CD209 RORA GPT IL1RL1 PCAT19 ZMYM2 CD83 ONECUT3 CDHR5 TRAC IL7R SPINT1
17 CLEC2D FCRL5 B3GNT6 S100A9 AMOTL2 RAMP1 SELENBP1 KLK1 TMIGD2 ANTXR1 APOE IL21R SELENBP1 CTTNBP2 CXorf36 KLF5 FCRLA GPX2 ELF3 CD6 TNFAIP3 RPL8
18 IL2RB CD79A TFF3 FPR1 TFF1 COL17A1 CDHR5 FABP2 CTSW CCDC80 CD163 TRAC UGT2B17 HPGD ADGRF5 ENC1 SPIB BMP4 HES1 ZC3H12D CD3G S100A13
19 LINC01871 AC104699.1 ENTPD8 TYROBP GPRC5A ITGA2 IGFBP2 L1TD1 GZMK NOTCH3 CSF1R MAF HMGCS2 LTC4S PCDH17 ZKSCAN1 HLA-DPB1 WDR72 CA12 CXCR4 HCST CAMK2N1
20 GPR65 AC093797.1 AC005833.1 CLEC7A LMO7 TMEM45B SNORC IGFBP2 KLRB1 COL12A1 SIGLEC1 TIGIT OLFM4 SVOPL PALMD GOLGA8B PAX5 DSG2 SELENBP1 TNFAIP3 DNAJA1 EPCAM
21 CD96 JUN IGFBP2 NLRP3 LSR AZGP1 CLDN3 URAD KIR2DL4 TIMP3 NPL ITK SLC4A4 LGALS12 ROBO4 PROX1 CCR7 GPRC5A AC023157.3 CREM ANXA1 KRT8
22 CLEC2B U62317.5 BEST2 OLR1 MACC1 KLK6 CDC42EP5 FRYL XCL2 CRYAB MS4A7 CD3G AMN CLU SLCO2A1 DST CD74 PLPP2 L1TD1 TRBC2 FYN SPRY2
23 CD52 HERPUD1 FAM3D AC020656.1 ITGA2 LAMA3 HEXIM1 MUC4 TXK GNG11 ADAP2 CD6 CEACAM7 GCSAML JAM2 CAPRIN2 CXCR4 TMEM45B AL355075.4 RGCC PTPRC DSTN
24 CTSW IGKV3-20 KIAA1324 MS4A6A S100P MANCR ELF3 FAM3D CD69 GUCY1A1 SUCNR1 CD3E TMEM238 RGS13 MYCT1 PCNX2 IGHM ENC1 TMEM238 SRGN H3F3B DSP
25 PTPRC CD27 L1TD1 CXCL8 DCBLD2 LINC02253 CHCHD10 ST6GALNAC1 ZAP70 COL4A1 C3AR1 CD4 SLC39A5 FCER1A TM4SF18 ARHGAP32 CD79B KRT8 HEXIM1 CNOT6L SRSF2 ANXA4
26 GPR171 IGKC URAD KYNU ABHD17C AQP5 RASD1 KRT20 CCL4 MXRA8 MS4A6A CXCR6 SOX4 MITF NRN1 GPRC5A POU2F2 PON2 HIST1H4C BCL11B YPEL5 SLCO4A1-AS1
27 FYN HSPA1L B4GALNT2 FGL2 GDF15 GJB1 ARL14 DLL1 GZMB ADAMTS1 MPEG1 CD5 LGALS4 IL13 LDB2 IGF2BP2 HLA-DQB1 KRT18 CENPF TNFRSF4 TSC22D3 KRT19
28 APOBEC3G RAB30 VSIG2 LILRA5 DSG2 MGST2 L1TD1 PADI2 CST7 DKK3 NR1H3 GIMAP7 ELF3 CSF2RB SHANK3 FOXQ1 ARHGAP24 COL27A1 RPS27 BTG1 DDR1
29 GZMM HSPA1B WFDC2 PTX3 SLC7A11 PLPP2 ATP5F1D ELF3 PIK3R1 PLAC9 C5AR1 PBXIP1 KRT20 AKAP12 CD34 CCNL2 LY86 ITGA2 ARHGDIB TMSB4X S100A6
30 RGS1 ICAM4 PCCA FGR C6orf132 CD109 ATP5ME ENTPD8 PRF1 C11orf96 STAB1 LTB ARL14 VWA5A PCDH12 MYO6 LTB CAMK2N1 PASK CXCR4 LSR
31 PRF1 SDF2L1 FAM3B CLEC10A PON2 ANO1 CFTR LGALS4 GADD45B IGFBP7 VMO1 RASGRP1 CA12 TYROBP ARHGEF15 ZRANB2 CD40 REG4 RPLP1 H2AFZ RPL12
32 ALOX5AP FKBP2 ST6GALNAC1 IGSF6 ABHD2 DPYSL2 HMGN5 AGR2 CLIC3 FRZB MRC1 MAGEH1 PLA2G2A ADAM12 EGFL7 GALNT5 NFKBID KLF5 BTG1 SRGN MIB2
33 KLRD1 SEC11C KRT20 BCL2A1 TFPI TFF1 SFN IFI27 NR4A2 COL6A3 MERTK ETS1 HIST1H2BG ALOX5AP THSD7A PNISR RUBCNL KRT19 RPL10 NR4A2 KRT18
34 LAYN IGKV4-1 TCEA3 LILRB2 PERP S100A16 RNF186 AMN KRT86 MGP DAB2 TIFA FAM3D ACSL4 GJA1 MLH3 FCMR TSHZ2 RPS27A CD52 TXN
35 SLA2 AC104024.1 GALNT12 ITGAX LAMA3 MAL2 MUC3A VSIG2 TRBC1 FERMT2 LILRB4 TOX2 NAALADL2 PTGS1 TIE1 BAZ2B LYN AGR3 PDCD4 PIK3R1 PLPP2
36 SH2D2A XBP1 PIGR HCAR2 EGR3 TM4SF1 TCEA3 TCEA3 ABCB1 A2M LAIR1 TRBC1 SMIM22 STXBP6 SELP PKN2 LINC01857 PROX1 ANXA1 DDX5 AQP5
37 CST7 TENT5C CREB3L1 ADGRE2 MANSC1 PLEK2 ARHGEF11 PCCA HCST CDH11 CPVL FAS HSD11B2 TNFSF10 ZNF385D CD46 TCF4 TSPAN8 DNAJA1 EIF1 TMSB10
38 CXCR6 GNG7 CA12 PTGS2 KLF5 ITGB4 PCLO KLF4 ID2 MYLK AIF1 SKAP1 CLDN3 GLUL FAM155A RERE RALGPS2 DNAJC12 FYN PTPN22 RPS24
39 TRAC PRDX4 SMAD9 HCK FIBCD1 DDR1 UGT2B17 WNK4 HSPA1A PDGFRB HMOX1 ARHGDIB CLDN4 SLC45A3 RAMP3 PRPF4B MIR29B2CHG PIWIL1 RPS6 CTSW LINC02253
40 FASLG FAM30A HSD11B2 CD86 CLDN4 WDR72 LGALS4 SNORC GPR65 ITIH5 LIPA CD7 HEXIM1 SMYD3 CALCRL SLK BASP1 SELENOP RPL9 TRBC1 GSTP1
41 SLA ST6GAL1 CDC42EP5 S100A12 FXYD3 BACE2 CSKMT CDC42EP5 TYROBP HSPB6 CD14 GPRIN3 NDUFB7 CSF1 PREX2 FAT1 POU2AF1 H1F0 RPL3 CREM RPL35
42 CD69 IGHV3-23 IFI27 C5AR1 RND3 SLC40A1 XDH CA12 MYBL1 COL1A1 MMP12 TBC1D4 AC005837.1 PTGS2 STC1 ELF3 LINC00926 NPAS2 ETS1 CD247 SLC25A6
43 GZMH HSPA1A HMGCS2 CYBB RAMP1 DMKN HMGCS2 TCIM JUNB SLIT3 GAL3ST4 CYTIP HES1 ANXA1 ERG MIB2 CCDC50 TSC22D1 SLC2A3 SARAF TMEM45B
44 CREM PRDM1 LGALS4 TNFSF13B ANXA4 SLC7A11 KRT18 HSD11B2 H2AFZ COL4A2 ADAMDEC1 FAM107B MUC3A FERMT2 COL15A1 TRIM56 RPS27 SLC40A1 CLEC2D MYADM ZFAS1
45 SYTL3 IGLC2 WNK4 CD93 EPCAM ANKRD22 CES3 HIST1H2BG H3F3B MMP2 FOLR2 BCL11B TCEA3 CLC PTPRB ZFC3H1 RPL19 DSP RPS12 ID2 RPL31
46 TNFRSF9 AC007952.4 PLA2G10 FAM49A GALNT5 ECM1 SLC39A5 RASD1 DNAJA1 ADGRA2 CTSL TMEM173 ID1 MAOB LIFR GCC2 HERPUD1 S100A6 DDX5 HSP90AB1 CEACAM6
47 GATA3 BTG2 MUC4 LGALS2 SFN ACSL5 SMIM22 KIAA1324 ITGAL ANGPTL2 SPP1 FAM184A TMEM54 SAMSN1 EXOC3L2 TRIM44 GRASP LRCH1 EIF1 RUNX3 KLF5
48 CNOT6L ANKRD28 FRYL EREG ECM1 DSG2 HIST1H2BF WFDC2 CD96 SERPING1 RASSF4 SH2D2A CHCHD10 VIM IL33 NKTR RPL23A ANXA2 CCR7 DUSP2 TSTA3
49 TNFAIP3 CYBA AGR2 AQP9 TM4SF1 CTHRC1 SEMA6A FAM13A DOK2 FN1 CCR1 TRAF1 PAPSS2 PTAFR SLC35G2 ZNF292 CD52 F5 CD3G ZNF331 SCD
50 LAG3 IGHV3-74 C10orf99 C1orf162 MET PON2 NRARP CREB3L1 DDX5 TNS1 CD86 PTPRC CDC42EP5 ADGRE2 MMRN1 MALAT1 SNX2 ITGA6 RPS3A RPS27 RPL37
51 ARHGDIB TXNDC11 SMIM31 MEFV MSLN CEACAM6 NDUFB7 ERN2 ARL4D FBLN1 FCGR1A ARID5B IFI27 CLNK SOX17 NEAT1 REL MAL2 CD7 STK17B ABHD2
52 AC058791.1 ICAM1 NEURL1 ZNF385A EPS8 SEPT10 RARRES2 ARL14 HSP90AB1 SPARCL1 RNASE6 LAX1 LINC01970 P2RX1 ADGRL4 SYNE2 LAPTM5 KCNQ1 ITM2A BRD2 WDR72
53 DUSP4 ICAM2 PHGR1 PHACTR1 BCL2L1 MANSC1 HES1 MLPH BRD2 FGF7 PLTP IKZF2 IGFBP2 LAT VEGFC MT1G RPLP2 ZKSCAN1 RPL34 ARHGDIB RPL37A
54 TMSB4X CD38 RAP1GAP CCRL2 PLPP2 MDK TCIM CRACR2B AUTS2 LMOD1 HLA-DMB ZNF282 SLC44A4 SRGN RAI14 SESN3 SERPINB5 RPL23A JUNB CYB5B
55 CXCR4 HSP90B1 TMEM61 SEMA6B CYB5B CDH1 AC023157.3 TRPM4 FYN ADAMTS4 DOCK4 PHTF2 NUPR1 SDCBP GNG11 RPSA FERMT1 RPSA UBE2S S100A14
56 RARRES3 LINC00309 TFCP2L1 TNFAIP2 BACE2 NT5E PRDX5 SMIM22 HSP90AA1 FOXF1 SLC1A3 KLRB1 APOBR SEC61B GPRC5B AFF3 COL17A1 TPT1 LAG3 RAMP1
57 CRTAM SPATS2 BCAS1 HCAR3 SDC4 PTPRN2 VEGFA EIF1 ACTA2 PTAFR SLA RASD1 FTH1 JCAD TBC1D9 CD46 CYTIP ZC3HAV1 REG4
58 AKAP5 DUSP5 RARRES1 CLEC4E CDH1 CAVIN3 HIST1H2AG GZMH FXYD1 GNB4 IL2RB ANPEP TIAM2 ZNF521 RPS8 UGT8 RPS15A RPS27A TPM2
59 VCAM1 IGLC3 UGT2B17 SLC8A1 TFF2 S100A13 AC103702.2 PTPRC ISLR SPI1 CD27 PCK1 LEO1 FAM167B SWAP70 LAMB3 RPS28 BCL11B TSNARE1
60 LINC02446 PTCH2 FOXA3 JAML CD9 HACD3 GPT TMSB4X NDUFA4L2 PILRA RGS1 MTRNR2L12 S100A4 DPYSL3 FAU TEAD1 RASGRP1 KLRD1 COMMD6
61 CCND2 DNAJB1 SERPINA1 RAB31 TSPAN1 ITGB5 NXPE1 SRGN FSTL1 CXCL9 FYB1 SFN LGALS1 RASIP1 RPL3 EPHB3 JUND FYB1 AGR2
62 LCP1 SEL1L HID1 SAMHD1 CDKN2A OCIAD2 FUT3 IDI1 MYH11 EPB41L3 GIMAP6 FAM13A DUSP14 COL4A1 IGHD ADGRG1 ARL4C RGCC GPRC5A
63 DOK2 PDK1 GPA33 CD1C F11R NEBL CA2 REL MAP1B CTSB ZNF831 AC103702.2 TMEM154 SPARC NR4A2 SPINT1 RUNX3 TRGC2 TKT
64 STK17B ZFAND2A FXYD3 ITGB2 CEMIP AIG1 KRT8 UBE2S EDNRA SLC8A1 RHOH TMPRSS2 EMP3 CXCL12 RPL9 MGAT4B RPL32 JUND RPL7
65 ITGA1 TP53INP1 ARL14 OGFRL1 NDFIP2 AFAP1L2 CLDN4 GZMM THY1 CLEC7A CORO1A CSKMT ARHGAP18 MGP RPL13A CDH17 CD48 HSPA8 PKM
66 EVL SSR3 SMIM22 LYZ LRRC8A MSRB2 TRPM4 LINC01871 ANK2 SIGLEC10 FYN ATP5F1D ARHGEF6 FAM69B RPS20 LINC02253 RPL13 RARRES3 RPL7A
67 REL EIF2AK4 NXPE4 MIR3945HG DSTN KRTCAP3 AMN DUSP2 SGCA A2M DUSP16 PRSS3 NFKBIA HSPA12B RPS11 MDK TSC22D3 DNAJB1 KRTCAP3
68 ITM2A UBE2J1 FAM13A TNFAIP6 UCHL3 CDKN2A CA12 SRSF2 TBX2 TSPAN4 PTPN22 GPA33 HSPA5 RAB3C CD48 CLRN3 NR3C1 HSP90AA1 PON2
69 KLRB1 FNDC3B SLC44A4 CD14 ANXA2 ANTXR2 PRSS3 CLEC2D COL5A1 C1orf54 ITM2A TST RAC2 CCM2L RPL34 IGF2BP2 RPL19 LINC01871 ETV4
70 PIK3R1 HSP90AA1 SMIM14 HLA-DQB1 MDK RAB11A GGT6 TRGC2 SULF1 MPP1 TNFRSF9 CES2 H3F3B GPR146 EEF1B2 TMC7 RPL5 PDCD4 S100A11
71 RAB8B NFKBIA PLCB4 HLA-DMB EFNB2 YAP1 GPA33 EIF5 GGT5 RAB7B PRDM1 ATP5ME PLAT S1PR1 RPL27A LGR5 LINC00513 VIM ARHGAP12
72 SRGN CPEB4 RASD1 IL1A ADAM9 ASPH S100A6 YPEL5 LHFPL6 TYROBP SMAP2 GOLM1 CKLF FAM107A GPR183 SCD RPS4X CD48 MYO6
73 MSN UBB GMDS HLA-DRA KRT19 BCL2L1 COX5B CKS2 NDN FCER1G TAB2 ASL CD63 CLEC1A RPL11 ANXA4 RPL28 CLEC2D H1F0
74 G3BP2 DNAAF1 ITM2C NAMPT SLC2A1 MSMO1 GOLM1 SNHG12 DDR2 CYBB GBP5 AL031777.3 ITM2B ADGRL2 RPS3A DHCR24 SMAP2 RPL23A TM4SF1
75 PDE4D PLCG2 KLF4 CCL3L1 EPHB6 TSPAN1 PPDPF ZNF331 AOC3 LILRB5 TP53INP1 AL135925.1 CAPG TMEM255B RPS27A AGR2 RPL30 RPL10 SMIM24
76 CCL4 MIR29B2CHG NXPE1 SIRPA H1F0 DHCR24 CDX2 HSPA1B MXRA5 FAM20A CREM KRT19 PRDX1 FSTL1 CYBB ZNF462 PBXIP1 GPR65 F5
77 FYB1 TRIB1 AC103702.2 CXCL2 DDR1 ANXA4 ITM2C GPR171 GPC6 CREG1 GYPC MECOM OSTC AQP1 RPS6 VDAC1 AC058791.1 AKNA ANXA2
78 EMB IGHG1 KRT18 EMILIN2 C1orf116 PERP CISD3 ITGAE DMD ABCA1 CHST7 REG1A MSRA MCAM RPS23 CTSE RPS20 LCP1 RPL36
79 SARAF SOCS3 NANS AC245128.3 WWTR1 PPP1R14B LINC01970 STK17A MRGPRF PLXDC2 SAMSN1 Z93241.1 RPL23 CFH RPL21 CHMP4C RPL21 S100A4 TESC
80 CYTIP RAPGEF1 TRPM4 PPIF VIL1 ABHD2 CC2D1A DOCK10 MFAP4 ACP5 AC058791.1 HIST1H4C RPL10 KANK3 NCOA3 LRP5 TMSB4X HOPX TINAGL1
81 CXCL13 FNDC3A ELF3 LY86 PHLDA2 LSR MAOA APOBEC3G FOXF2 CD84 CD247 NDUFB10 HSP90B1 ADAMTS1 KDM6B NR2F6 SATB1 REL AGR3
82 DNAJA1 MANF CLDN3 STX11 FOXQ1 PLEKHB1 TIMM13 UBB TNC GM2A GK TRPM4 IDNK LIMS2 RPS14 PLOD3 SRSF2 RAC2 VIL1
83 CD247 ICAM3 IMPA2 CD36 NEBL SELENOP RHOB CREM NFATC4 SLC15A3 LCK EPS8L3 FTL COL4A2 RPS28 FOXQ1 IKZF1 RNF139 TIMP1
84 TRGC2 PABPC4 CRACR2B TFEC AZGP1 ITGB1 COX6B1 AKNA GUCY1B1 TCN2 CACYBP HIST1H2AG SLC2A3 MEOX1 RIPOR2 SPTBN1 KDM6B FAU SPATS2L
85 PDCD4 SRM OVOL1 RIPK2 KRT8 S100P MUC17 IER2 DCN HCK ZNRF1 CISD3 JUND PTPRM KDM4B GJB1 RPS19 GZMH LGALS3
86 JUND PPP1R15A CKB CTSS ARHGAP12 EIF4EBP1 WDR60 DNAJB1 NFASC MFSD1 CNOT6L IER3 CD44 NLGN4Y SP140 BSG ZAP70 RPS6 EPB41L2
87 PREX1 USP48 GGT6 VCAN DSP NPAS2 ATP5IF1 PLCL2 FHL1 SIGLEC12 DOK2 HIST1H2AH NFKBIZ ACKR1 CD69 HMGA1 RPL27 MCL1 YAP1
88 SKAP1 IRF1 ATP2C2 ADA2 JUP CAV2 IFI27 YME1L1 EHD2 FGL2 SRGN PLCB4 BEX4 AC103718.1 DNAJA1 CEACAM6 RPS14 PNRC1 LAMB3
89 ITGAE GYPC NEDD4L BID PPIC SERPINB5 COX6C TNFAIP3 PODN MMP19 JAK3 COX5B CLIC1 PROS1 RPL10 LSR RPLP2 RPS12 IGF2BP2
90 STK17A SIL1 ERN2 GAS7 S100A16 MYOF FABP1 RARRES3 KIRREL1 SIRPA UCP2 PPDPF MYL12A HTRA1 PRKCB EPB41L2 REL HLA-C SNHG7
91 BTG1 CRELD2 EHF DENND5A TMEM45B EPCAM FUT6 NEU1 PCOLCE PLXNC1 ZAP70 AL355075.4 SELENOK TSPAN18 RPL32 PLCD3 HSPA8 IL2RB PLA2G16
92 BCL11B SELENOS SNORC ARRB2 GSN TESC PLCB4 H2AFX LAMA4 RAB31 FNBP1 SEMA3B AREG RHOJ EZR FAM83H RHOH RPL19 TSPAN8
93 MATK HSPA6 MLPH ITGB2-AS1 SPINT1 RHBDF1 C10orf99 LSP1 EDIL3 NFAM1 STAM SRI TUBA1A F2RL3 GNG7 TRIM2 CD52 NCL RAB25
94 LINC00513 IRF4 FUT3 TYMP CD109 SCD PLCE1 TAGAP PDLIM3 GAA TNFRSF25 SNORC UBB FAT4 RPL27 TXN LDHB CALM1 S100A16
95 METRNL HSPB1 ERI3 CSF1R CAMK2N1 HSD17B12 KRT19 CD3E HEYL CD68 STK17B ITM2C PTMA SPARCL1 SLC2A3 MYO6 GPRIN3 AC044849.1 TPPP3
96 RHOH GADD45B PDK4 CCL3 TNFSF15 MSLN ID1 BTG1 ACTG2 CD72 DUSP4 LGALS3 CD9 GALNT18 EIF1 EPS8 RPS13 RGS1 KDELR1
97 DUSP2 FBXW7 CHCHD10 ITGAM KRT18 IGF2BP2 KRT20 DDIT4 PCDH18 F13A1 PFN1 C4orf48 GALNT6 NRP1 RPL30 SLC7A1 FAM107B TSPYL2 RPL14
98 TNIP3 ERLEC1 TSPAN1 RNF144B CDKN2B MTCL1 ATP10B MYLIP THBS2 SLC7A8 PSTPIP1 MAFB NACA SELE RPS12 SOX2 STAT4 RPLP1 RPS23
99 IFNG CXorf21 KRT8 SNX10 TJP1 ASAP2 ABCC3 ARHGAP45 CYGB SERPING1 SOD1 PPP1R1B TNFAIP8 TLL1 CKS2 MAP4K3 JUNB RPLP2 RPL4
100 RORA Z93241.1 REG4 RASSF4 ANXA11 SPATS2L PPP1R1B PTPN4 FBN1 S100A9 NDUFV2 UQCRC1 LAT2 GATA2-AS1 RASGEF1B SEMA3A RPS29 STK17A CD9

separation of epithelial, stromal and immune cells

Cell split